Wall clock time and date at job start Mon Mar 30 2020 03:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35318 * 126.12841 * 2 1 4 4 C 1.50699 * 126.04085 * 0.02562 * 3 2 1 5 5 N 1.46908 * 109.46968 * 80.00080 * 4 3 2 6 6 C 1.46899 * 110.99997 * 180.02562 * 5 4 3 7 7 C 1.53000 * 117.49791 * 223.74820 * 6 5 4 8 8 C 1.52993 * 117.49894 * 155.08728 * 6 5 4 9 9 C 1.39875 * 107.92186 * 180.02562 * 3 2 1 10 10 N 1.30839 * 108.20184 * 359.97438 * 9 3 2 11 11 N 1.34949 * 126.12911 * 180.02562 * 2 1 3 12 12 C 1.46506 * 126.03292 * 359.96407 * 11 2 1 13 13 C 1.50701 * 109.46816 * 89.99911 * 12 11 2 14 14 H 1.08000 * 120.00076 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99732 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00190 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99975 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47371 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47406 * 120.00203 * 17 15 13 20 20 H 1.48510 * 109.47117 * 240.00167 * 17 15 13 21 21 H 1.08996 * 109.47479 * 89.99542 * 1 2 3 22 22 H 1.08997 * 109.47307 * 210.00240 * 1 2 3 23 23 H 1.09005 * 109.46944 * 330.00206 * 1 2 3 24 24 H 1.09002 * 109.47534 * 199.99676 * 4 3 2 25 25 H 1.08998 * 109.47475 * 320.00583 * 4 3 2 26 26 H 1.00903 * 110.99922 * 56.04721 * 5 4 3 27 27 H 1.09005 * 115.55188 * 9.41646 * 6 5 4 28 28 H 1.08994 * 117.49832 * 359.97438 * 7 6 5 29 29 H 1.09004 * 117.49447 * 145.02428 * 7 6 5 30 30 H 1.09007 * 117.49783 * 214.98352 * 8 6 5 31 31 H 1.08999 * 117.50126 * 359.97438 * 8 6 5 32 32 H 1.08003 * 125.89835 * 179.73925 * 9 3 2 33 33 H 1.08996 * 109.47043 * 209.99879 * 12 11 2 34 34 H 1.09000 * 109.46815 * 330.00208 * 12 11 2 35 35 H 0.96997 * 119.99711 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5276 0.0005 5 7 1.4649 2.9197 1.3648 6 6 1.0082 4.3153 1.4039 7 6 1.5149 5.1926 2.5504 8 6 0.0600 4.7169 2.5354 9 6 3.6335 0.6559 -0.0006 10 7 3.6334 -0.6525 -0.0004 11 7 2.3026 -1.0900 -0.0005 12 6 1.8538 -2.4846 -0.0004 13 6 1.6992 -2.9626 -1.4212 14 1 1.9134 -2.2943 -2.2421 15 6 1.2843 -4.2531 -1.6730 16 7 1.0231 -5.0668 -0.6733 17 14 1.0934 -4.8459 -3.4341 18 1 1.4460 -3.7461 -4.3676 19 1 1.9951 -6.0024 -3.6677 20 1 -0.3136 -5.2603 -3.6671 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8901 0.5138 24 1 2.6512 3.1693 -0.3510 25 1 0.9823 2.6326 -0.6596 26 1 2.2274 2.7702 2.0086 27 1 0.8631 4.7899 0.4333 28 1 2.1867 4.7341 3.2760 29 1 1.7026 6.2444 2.3343 30 1 -0.7088 5.4559 2.3094 31 1 -0.2253 3.9455 3.2506 32 1 4.5084 1.2891 -0.0047 33 1 2.5900 -3.1031 0.5130 34 1 0.8955 -2.5578 0.5139 35 1 0.7308 -5.9746 -0.8506 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042355743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:57 Heat of formation + Delta-G solvation = 71.432870 kcal Electronic energy + Delta-G solvation = -16081.841966 eV Core-core repulsion = 13502.059889 eV Total energy + Delta-G solvation = -2579.782077 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.03562 -38.63261 -35.85329 -34.76538 -33.63443 -32.05736 -29.09518 -28.00506 -25.62622 -24.54876 -23.13629 -21.99773 -21.41329 -20.11774 -18.81086 -17.38203 -16.86042 -16.50485 -16.25934 -15.80321 -15.12010 -14.81454 -14.39616 -14.14246 -14.00824 -13.61084 -13.47532 -13.37611 -12.97839 -12.77222 -12.70624 -12.64442 -12.29353 -12.24498 -11.78703 -11.62067 -11.32641 -11.09319 -10.75199 -10.02416 -9.19143 -8.95733 -8.35087 -6.52610 1.20070 1.36132 1.37806 1.50465 1.92886 1.96902 2.34059 2.95133 3.03743 3.40619 3.90322 4.03644 4.12807 4.19010 4.26906 4.40979 4.54898 4.59636 4.69896 4.82525 4.84205 4.87759 4.89032 4.99155 5.11578 5.15239 5.28169 5.36960 5.46907 5.53494 5.79926 5.97483 6.27335 6.31773 6.51909 6.62014 7.07898 7.18932 8.72117 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.045325 B = 0.004937 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.618996 B = 5670.603879 C = 5838.825639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.095 3.905 3 C -0.265 4.265 4 C 0.161 3.839 5 N -0.665 5.665 6 C 0.016 3.984 7 C -0.200 4.200 8 C -0.177 4.177 9 C 0.036 3.964 10 N -0.351 5.351 11 N -0.356 5.356 12 C 0.272 3.728 13 C -0.552 4.552 14 H 0.050 0.950 15 C 0.020 3.980 16 N -0.920 5.920 17 Si 0.974 3.026 18 H -0.272 1.272 19 H -0.274 1.274 20 H -0.266 1.266 21 H 0.078 0.922 22 H 0.056 0.944 23 H 0.106 0.894 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.342 0.658 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.205 0.795 33 H 0.019 0.981 34 H 0.044 0.956 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 18.334 2.751 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.036 4.036 3 C -0.277 4.277 4 C 0.032 3.968 5 N -0.295 5.295 6 C -0.094 4.094 7 C -0.239 4.239 8 C -0.216 4.216 9 C -0.148 4.148 10 N -0.173 5.173 11 N -0.137 5.137 12 C 0.153 3.847 13 C -0.590 4.590 14 H 0.068 0.932 15 C -0.181 4.181 16 N -0.558 5.558 17 Si 0.798 3.202 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.191 1.191 21 H 0.096 0.904 22 H 0.075 0.925 23 H 0.124 0.876 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.161 0.839 27 H 0.135 0.865 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.221 0.779 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.866 16.643 2.746 16.971 hybrid contribution 0.459 0.175 -0.631 0.800 sum -1.407 16.819 2.115 17.009 Atomic orbital electron populations 1.20394 0.86455 1.03683 1.03203 1.21446 0.95840 0.86986 0.99300 1.19821 0.91552 0.95679 1.20633 1.19960 0.98961 0.88344 0.89576 1.60241 1.42005 1.19093 1.08168 1.22504 1.04063 0.88098 0.94783 1.23453 0.97592 1.00765 1.02069 1.23151 0.93310 1.03071 1.02029 1.24173 0.98662 0.91732 1.00280 1.77247 0.99308 1.14280 1.26464 1.49126 1.03313 1.07463 1.53812 1.19148 0.94583 0.73241 0.97720 1.21463 1.47524 0.98338 0.91706 0.93181 1.25789 0.93891 0.95945 1.02435 1.70021 1.45225 1.07495 1.33085 0.85264 0.78498 0.78122 0.78321 1.19647 1.19975 1.19118 0.90357 0.92547 0.87581 0.93070 0.90509 0.83898 0.86493 0.89066 0.87575 0.87661 0.89679 0.77884 0.96332 0.93785 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.69 9.89 71.23 0.70 -1.99 16 2 C 0.10 3.82 6.93 41.40 0.29 4.11 16 3 C -0.26 -8.98 5.61 -20.14 -0.11 -9.09 16 4 C 0.16 3.95 5.54 85.56 0.47 4.43 16 5 N -0.66 -15.15 6.77 -495.57 -3.35 -18.51 16 6 C 0.02 0.29 6.31 44.91 0.28 0.57 16 7 C -0.20 -3.05 10.23 30.62 0.31 -2.73 16 8 C -0.18 -2.99 10.46 30.62 0.32 -2.67 16 9 C 0.04 1.31 11.96 85.24 1.02 2.33 16 10 N -0.35 -16.39 12.58 -57.02 -0.72 -17.11 16 11 N -0.36 -17.29 3.60 -338.40 -1.22 -18.51 16 12 C 0.27 14.86 6.00 85.63 0.51 15.37 16 13 C -0.55 -31.60 9.39 25.60 0.24 -31.36 16 14 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 15 C 0.02 1.12 5.46 84.65 0.46 1.58 16 16 N -0.92 -53.04 13.29 21.45 0.28 -52.75 16 17 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 22 H 0.06 2.05 7.08 -2.39 -0.02 2.03 16 23 H 0.11 3.02 7.89 -2.38 -0.02 3.00 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.08 1.84 8.13 -2.39 -0.02 1.82 16 26 H 0.34 7.87 8.51 -89.69 -0.76 7.10 16 27 H 0.12 1.87 7.90 -2.38 -0.02 1.85 16 28 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 29 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.20 5.49 8.06 -2.91 -0.02 5.47 16 33 H 0.02 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.04 2.41 7.05 -2.39 -0.02 2.39 16 35 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -64.84 302.54 1.84 -62.99 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.31 Total: 17.74 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 4.50 Total: -19.45 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -5.00 Total: -106.87 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -64.84 1.84 -62.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042355743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.426 kcal (2) G-P(sol) polarization free energy of solvation -64.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds