Wall clock time and date at job start Mon Mar 30 2020 03:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47068 * 2 1 4 4 C 1.46901 * 110.99896 * 193.95380 * 3 2 1 5 5 C 1.50694 * 109.47417 * 66.04146 * 4 3 2 6 6 H 1.08006 * 120.00076 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00111 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99740 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00128 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00386 * 9 7 5 11 11 H 1.48503 * 109.47561 * 210.00467 * 9 7 5 12 12 H 1.48508 * 109.47184 * 330.00379 * 9 7 5 13 13 C 1.39675 * 111.00094 * 69.99836 * 3 2 1 14 14 C 1.38927 * 120.07775 * 63.95432 * 13 3 2 15 15 C 1.38076 * 119.92862 * 179.97438 * 14 13 3 16 16 C 1.38309 * 120.07557 * 359.97438 * 15 14 13 17 17 C 1.38272 * 120.14681 * 359.97438 * 16 15 14 18 18 C 1.38126 * 120.07563 * 0.25962 * 17 16 15 19 19 C 1.50693 * 120.03914 * 179.74621 * 18 17 16 20 20 O 1.42904 * 109.47264 * 359.97438 * 19 18 17 21 21 H 1.08999 * 109.47086 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47247 * 300.00444 * 1 2 3 23 23 H 1.09008 * 109.46871 * 60.00287 * 1 2 3 24 24 H 1.08996 * 109.47016 * 239.99927 * 2 1 3 25 25 H 1.09003 * 109.46630 * 119.99324 * 2 1 3 26 26 H 1.09000 * 109.47136 * 186.04609 * 4 3 2 27 27 H 1.09005 * 109.46636 * 306.04139 * 4 3 2 28 28 H 0.97002 * 119.99129 * 179.97438 * 8 7 5 29 29 H 1.08006 * 120.03667 * 359.95612 * 14 13 3 30 30 H 1.07997 * 119.96516 * 180.02562 * 15 14 13 31 31 H 1.07996 * 119.93124 * 180.02562 * 16 15 14 32 32 H 1.08002 * 119.95912 * 179.97438 * 17 16 15 33 33 H 1.09001 * 109.47314 * 119.99554 * 19 18 17 34 34 H 1.09006 * 109.47220 * 240.00005 * 19 18 17 35 35 H 0.96698 * 114.00450 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4500 1.4377 -0.3307 5 6 3.6536 0.9854 -1.7537 6 1 2.8052 0.6888 -2.3527 7 6 4.9229 0.9501 -2.2909 8 7 5.1005 0.5558 -3.5330 9 14 6.3901 1.4636 -1.2552 10 1 6.9292 0.2796 -0.5391 11 1 7.4429 2.0315 -2.1352 12 1 5.9647 2.4880 -0.2677 13 6 1.7660 2.0056 1.2253 14 6 2.3712 1.5336 2.3833 15 6 2.1187 2.1498 3.5929 16 6 1.2647 3.2361 3.6525 17 6 0.6615 3.7091 2.5017 18 6 0.9060 3.0944 1.2891 19 6 0.2437 3.6071 0.0364 20 8 -0.5840 4.7264 0.3590 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 3.8113 2.4600 -0.2191 27 1 4.0027 0.7816 0.3418 28 1 5.9935 0.5313 -3.9110 29 1 3.0383 0.6854 2.3376 30 1 2.5891 1.7836 4.4934 31 1 1.0691 3.7165 4.5997 32 1 -0.0052 4.5574 2.5517 33 1 1.0070 3.9134 -0.6789 34 1 -0.3678 2.8175 -0.4006 35 1 -1.0431 5.1084 -0.4016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042450952.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:12 Heat of formation + Delta-G solvation = -18.865028 kcal Electronic energy + Delta-G solvation = -16863.605483 eV Core-core repulsion = 14247.615044 eV Total energy + Delta-G solvation = -2615.990439 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69569 -36.69363 -36.03618 -32.64540 -31.24698 -30.64589 -29.49105 -26.73571 -25.29827 -22.81571 -22.13132 -20.84437 -19.73532 -17.28141 -16.87058 -16.22499 -15.14240 -15.01153 -14.77028 -14.32146 -13.98973 -13.65509 -13.47526 -13.16977 -12.62363 -12.47788 -12.07780 -11.94948 -11.35313 -11.27679 -11.00563 -10.89258 -10.68374 -10.49823 -10.29465 -10.02517 -9.87756 -9.35426 -8.63675 -8.43516 -8.10598 -7.62542 -6.11250 -4.09276 1.66204 1.71562 3.24660 3.32977 3.36523 4.06103 4.37358 4.42700 4.61650 5.20830 5.21600 5.28811 5.38631 5.59430 5.73652 5.79492 5.81122 5.92914 5.96738 6.01042 6.21887 6.29991 6.39313 6.56977 6.62414 6.69290 6.79353 6.82897 6.88244 6.98820 7.25845 7.56157 7.78575 7.82818 8.12128 8.60554 8.96170 9.50051 11.01411 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.023577 B = 0.008188 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.311430 B = 3418.849262 C = 3648.048506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.060 3.940 3 N -0.500 5.500 4 C 0.169 3.831 5 C -0.512 4.512 6 H 0.083 0.917 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.872 3.128 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.116 3.884 14 C -0.155 4.155 15 C -0.116 4.116 16 C -0.140 4.140 17 C -0.097 4.097 18 C -0.074 4.074 19 C 0.128 3.872 20 O -0.581 6.581 21 H 0.051 0.949 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.024 0.976 26 H 0.029 0.971 27 H -0.011 1.011 28 H 0.264 0.736 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.817 3.735 10.598 14.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 N -0.221 5.221 4 C 0.044 3.956 5 C -0.550 4.550 6 H 0.101 0.899 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.699 3.301 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.022 3.978 14 C -0.175 4.175 15 C -0.135 4.135 16 C -0.158 4.158 17 C -0.116 4.116 18 C -0.075 4.075 19 C 0.051 3.949 20 O -0.386 6.386 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.114 0.886 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.006 0.994 28 H 0.074 0.926 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -8.686 3.808 10.654 14.264 hybrid contribution 1.306 -0.151 0.531 1.418 sum -7.380 3.657 11.185 13.890 Atomic orbital electron populations 1.21794 0.96211 1.00633 1.01641 1.22084 0.94496 0.88368 1.01677 1.59747 1.20653 1.16760 1.24971 1.20216 0.81674 0.96534 0.97155 1.20989 0.94558 1.44123 0.95312 0.89900 1.24862 0.98592 0.94807 0.94833 1.69889 1.22540 1.47616 1.13577 0.86912 0.83017 0.79477 0.80713 1.20261 1.21027 1.19085 1.18861 0.94829 0.94407 0.89733 1.21702 1.01264 1.01193 0.93322 1.20965 0.98707 0.96544 0.97251 1.21048 0.98931 0.97697 0.98122 1.20882 0.99488 0.99703 0.91518 1.19604 0.97713 0.95477 0.94697 1.20739 0.92820 0.87280 0.94043 1.86356 1.64837 1.48912 1.38523 0.92966 0.93602 0.92171 0.88648 0.95727 0.95255 0.99378 0.92576 0.86327 0.86743 0.86622 0.85350 0.91378 0.91883 0.77501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.81 37.16 0.36 -1.92 16 2 C 0.06 1.14 5.44 -3.82 -0.02 1.12 16 3 N -0.50 -10.35 3.82 -172.47 -0.66 -11.01 16 4 C 0.17 4.07 3.37 -4.98 -0.02 4.05 16 5 C -0.51 -14.15 8.87 -34.44 -0.31 -14.46 16 6 H 0.08 2.47 7.47 -52.48 -0.39 2.08 16 7 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 9 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 13 C 0.12 2.19 3.72 -83.79 -0.31 1.87 16 14 C -0.15 -2.70 8.53 -39.39 -0.34 -3.04 16 15 C -0.12 -1.74 10.04 -39.61 -0.40 -2.13 16 16 C -0.14 -2.01 10.04 -39.54 -0.40 -2.40 16 17 C -0.10 -1.53 9.37 -39.61 -0.37 -1.90 16 18 C -0.07 -1.29 5.90 -104.42 -0.62 -1.90 16 19 C 0.13 2.03 6.85 36.00 0.25 2.28 16 20 O -0.58 -7.89 12.14 -35.23 -0.43 -8.32 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.04 0.72 7.52 -51.93 -0.39 0.33 16 23 H 0.06 0.95 7.97 -51.92 -0.41 0.54 16 24 H 0.10 2.00 6.60 -51.93 -0.34 1.66 16 25 H 0.02 0.45 7.07 -51.93 -0.37 0.08 16 26 H 0.03 0.74 7.12 -51.93 -0.37 0.37 16 27 H -0.01 -0.28 6.90 -51.93 -0.36 -0.63 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 29 H 0.12 2.06 7.14 -52.48 -0.37 1.69 16 30 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.13 1.88 7.00 -52.49 -0.37 1.51 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.98 7.84 -51.93 -0.41 0.57 16 35 H 0.38 3.33 9.12 45.56 0.42 3.75 16 LS Contribution 288.02 15.07 4.34 4.34 Total: -1.00 -30.69 288.02 -7.13 -37.81 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.23 Total: 3.18 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.26 Total: -16.51 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.11 Total: -37.22 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.43 Total: -8.32 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.69 -7.13 -37.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450952.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.950 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds