Wall clock time and date at job start Mon Mar 30 2020 03:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47068 * 2 1 4 4 C 1.46901 * 110.99896 * 193.95380 * 3 2 1 5 5 C 1.50694 * 109.47417 * 66.04146 * 4 3 2 6 6 H 1.08006 * 120.00076 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00111 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99740 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00128 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00386 * 9 7 5 11 11 H 1.48503 * 109.47561 * 210.00467 * 9 7 5 12 12 H 1.48508 * 109.47184 * 330.00379 * 9 7 5 13 13 C 1.39675 * 111.00094 * 69.99836 * 3 2 1 14 14 C 1.38927 * 120.07775 * 63.95432 * 13 3 2 15 15 C 1.38076 * 119.92862 * 179.97438 * 14 13 3 16 16 C 1.38309 * 120.07557 * 359.97438 * 15 14 13 17 17 C 1.38272 * 120.14681 * 359.97438 * 16 15 14 18 18 C 1.38126 * 120.07563 * 0.25962 * 17 16 15 19 19 C 1.50693 * 120.03914 * 179.74621 * 18 17 16 20 20 O 1.42904 * 109.47264 * 359.97438 * 19 18 17 21 21 H 1.08999 * 109.47086 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47247 * 300.00444 * 1 2 3 23 23 H 1.09008 * 109.46871 * 60.00287 * 1 2 3 24 24 H 1.08996 * 109.47016 * 239.99927 * 2 1 3 25 25 H 1.09003 * 109.46630 * 119.99324 * 2 1 3 26 26 H 1.09000 * 109.47136 * 186.04609 * 4 3 2 27 27 H 1.09005 * 109.46636 * 306.04139 * 4 3 2 28 28 H 0.97002 * 119.99129 * 179.97438 * 8 7 5 29 29 H 1.08006 * 120.03667 * 359.95612 * 14 13 3 30 30 H 1.07997 * 119.96516 * 180.02562 * 15 14 13 31 31 H 1.07996 * 119.93124 * 180.02562 * 16 15 14 32 32 H 1.08002 * 119.95912 * 179.97438 * 17 16 15 33 33 H 1.09001 * 109.47314 * 119.99554 * 19 18 17 34 34 H 1.09006 * 109.47220 * 240.00005 * 19 18 17 35 35 H 0.96698 * 114.00450 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4500 1.4377 -0.3307 5 6 3.6536 0.9854 -1.7537 6 1 2.8052 0.6888 -2.3527 7 6 4.9229 0.9501 -2.2909 8 7 5.1005 0.5558 -3.5330 9 14 6.3901 1.4636 -1.2552 10 1 6.9292 0.2796 -0.5391 11 1 7.4429 2.0315 -2.1352 12 1 5.9647 2.4880 -0.2677 13 6 1.7660 2.0056 1.2253 14 6 2.3712 1.5336 2.3833 15 6 2.1187 2.1498 3.5929 16 6 1.2647 3.2361 3.6525 17 6 0.6615 3.7091 2.5017 18 6 0.9060 3.0944 1.2891 19 6 0.2437 3.6071 0.0364 20 8 -0.5840 4.7264 0.3590 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 3.8113 2.4600 -0.2191 27 1 4.0027 0.7816 0.3418 28 1 5.9935 0.5313 -3.9110 29 1 3.0383 0.6854 2.3376 30 1 2.5891 1.7836 4.4934 31 1 1.0691 3.7165 4.5997 32 1 -0.0052 4.5574 2.5517 33 1 1.0070 3.9134 -0.6789 34 1 -0.3678 2.8175 -0.4006 35 1 -1.0431 5.1084 -0.4016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042450952.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:11 Heat of formation + Delta-G solvation = -40.075076 kcal Electronic energy + Delta-G solvation = -16864.525219 eV Core-core repulsion = 14247.615044 eV Total energy + Delta-G solvation = -2616.910176 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.04362 -38.04862 -37.28172 -34.76440 -32.47070 -32.08762 -31.10937 -28.42079 -26.58690 -24.18590 -23.98842 -22.15423 -21.19100 -19.11108 -18.18556 -17.63000 -16.85210 -16.37341 -16.25973 -15.75890 -15.49075 -15.07834 -14.67557 -14.62582 -14.50500 -14.23938 -13.32580 -13.24914 -13.05484 -12.74594 -12.66313 -12.30475 -12.17571 -12.01390 -11.82029 -11.77562 -11.44724 -11.17577 -10.82138 -9.69072 -9.39415 -9.23425 -8.31670 -6.34710 0.40561 0.46836 1.30159 1.32888 1.43216 2.30500 2.82140 2.99712 3.09083 3.34684 4.02270 4.15063 4.17131 4.23159 4.36465 4.51169 4.57431 4.62774 4.66563 4.74250 4.78037 4.84091 4.97875 5.01279 5.17043 5.21083 5.32311 5.45089 5.52541 5.60372 5.71996 5.94502 6.06812 6.31375 6.70513 6.79167 6.92053 7.28532 8.84289 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.023577 B = 0.008188 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.311430 B = 3418.849262 C = 3648.048506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.060 3.940 3 N -0.505 5.505 4 C 0.183 3.817 5 C -0.514 4.514 6 H 0.046 0.954 7 C 0.015 3.985 8 N -0.942 5.942 9 Si 0.939 3.061 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.257 1.257 13 C 0.087 3.913 14 C -0.169 4.169 15 C -0.112 4.112 16 C -0.128 4.128 17 C -0.100 4.100 18 C -0.090 4.090 19 C 0.137 3.863 20 O -0.581 6.581 21 H 0.074 0.926 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.031 0.969 26 H 0.019 0.981 27 H -0.011 1.011 28 H 0.268 0.732 29 H 0.112 0.888 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.140 0.860 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 4.708 13.454 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.066 4.066 3 N -0.227 5.227 4 C 0.058 3.942 5 C -0.552 4.552 6 H 0.064 0.936 7 C -0.183 4.183 8 N -0.583 5.583 9 Si 0.762 3.238 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.181 1.181 13 C -0.007 4.007 14 C -0.189 4.189 15 C -0.130 4.130 16 C -0.146 4.146 17 C -0.119 4.119 18 C -0.091 4.091 19 C 0.060 3.940 20 O -0.390 6.390 21 H 0.093 0.907 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.007 0.993 28 H 0.077 0.923 29 H 0.130 0.870 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.158 0.842 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.032 4.790 13.514 16.945 hybrid contribution 1.280 -0.427 -0.338 1.391 sum -7.752 4.363 13.176 15.898 Atomic orbital electron populations 1.21674 0.93576 1.02110 1.01561 1.22068 0.96642 0.87542 1.00351 1.59584 1.18244 1.17727 1.27137 1.19884 0.84279 0.95344 0.94742 1.21173 0.93587 1.43557 0.96867 0.93580 1.25716 1.01748 0.94872 0.95989 1.70028 1.23469 1.49251 1.15507 0.85842 0.79144 0.79587 0.79184 1.19067 1.20410 1.18115 1.18915 0.96934 0.95645 0.89164 1.21773 1.01548 1.01552 0.94035 1.21303 0.98286 0.96154 0.97258 1.21476 0.97168 0.96811 0.99116 1.21108 0.99640 0.99812 0.91302 1.19804 0.97934 0.95355 0.95973 1.20486 0.92483 0.87853 0.93210 1.86302 1.64591 1.48158 1.39954 0.90688 0.93089 0.92693 0.91743 0.95106 0.96330 0.99308 0.92330 0.86966 0.83660 0.82942 0.84190 0.93574 0.92015 0.75104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.81 71.98 0.71 -3.39 16 2 C 0.06 2.33 5.44 86.30 0.47 2.80 16 3 N -0.51 -21.30 3.82 -699.59 -2.67 -23.98 16 4 C 0.18 8.98 3.37 85.55 0.29 9.27 16 5 C -0.51 -29.49 8.87 25.60 0.23 -29.26 16 6 H 0.05 2.91 7.47 -2.91 -0.02 2.89 16 7 C 0.01 0.86 5.47 84.65 0.46 1.32 16 8 N -0.94 -58.32 13.96 21.45 0.30 -58.02 16 9 Si 0.94 44.39 27.47 68.60 1.88 46.28 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.26 -11.69 6.54 99.48 0.65 -11.04 16 13 C 0.09 3.23 3.72 38.21 0.14 3.37 16 14 C -0.17 -5.62 8.53 22.40 0.19 -5.43 16 15 C -0.11 -2.94 10.04 22.25 0.22 -2.72 16 16 C -0.13 -3.14 10.04 22.29 0.22 -2.91 16 17 C -0.10 -2.86 9.37 22.25 0.21 -2.65 16 18 C -0.09 -3.01 5.90 -19.74 -0.12 -3.13 16 19 C 0.14 4.30 6.85 71.23 0.49 4.78 16 20 O -0.58 -14.83 12.14 -148.98 -1.81 -16.63 16 21 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.05 1.53 7.52 -2.39 -0.02 1.51 16 23 H 0.05 1.74 7.97 -2.38 -0.02 1.73 16 24 H 0.06 2.85 6.60 -2.39 -0.02 2.83 16 25 H 0.03 1.13 7.07 -2.39 -0.02 1.11 16 26 H 0.02 0.95 7.12 -2.39 -0.02 0.93 16 27 H -0.01 -0.52 6.90 -2.38 -0.02 -0.54 16 28 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.11 3.79 7.14 -2.91 -0.02 3.77 16 30 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.14 3.64 7.00 -2.91 -0.02 3.62 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.92 7.84 -2.38 -0.02 1.90 16 35 H 0.40 6.34 9.12 -74.06 -0.68 5.66 16 Total: -1.00 -67.20 288.02 1.56 -65.64 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.35 Total: 14.66 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 3.51 Total: -27.95 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -2.38 Total: -81.99 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -1.81 Total: -16.63 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.28 kcal Total: -67.20 1.56 -65.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450952.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.562 kcal (2) G-P(sol) polarization free energy of solvation -67.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds