Wall clock time and date at job start Mon Mar 30 2020 03:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38115 * 120.39924 * 2 1 4 4 C 1.39623 * 118.33609 * 179.71964 * 3 2 1 5 5 N 1.38545 * 120.53685 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00180 * 190.67025 * 5 4 3 7 7 C 1.50699 * 109.46977 * 90.00409 * 6 5 4 8 8 H 1.08001 * 119.99878 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99984 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00224 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99941 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46915 * 90.00772 * 11 9 7 13 13 H 1.48501 * 109.46954 * 210.00429 * 11 9 7 14 14 H 1.48500 * 109.47263 * 330.00220 * 11 9 7 15 15 C 1.46504 * 119.99518 * 10.67712 * 5 4 3 16 16 C 1.53002 * 109.47054 * 125.33962 * 15 5 4 17 17 C 1.52999 * 109.46920 * 245.33789 * 15 5 4 18 18 N 1.32996 * 118.93604 * 0.02562 * 4 3 2 19 19 C 1.31756 * 120.68557 * 359.97438 * 18 4 3 20 20 N 1.31784 * 121.82894 * 359.97438 * 19 18 4 21 21 H 1.09009 * 109.47420 * 89.99947 * 1 2 3 22 22 H 1.08994 * 109.47533 * 209.99825 * 1 2 3 23 23 H 1.08999 * 109.47336 * 330.00318 * 1 2 3 24 24 H 1.08001 * 120.83782 * 359.75167 * 3 2 1 25 25 H 1.09004 * 109.46819 * 210.00426 * 6 5 4 26 26 H 1.08996 * 109.47180 * 330.00356 * 6 5 4 27 27 H 0.96995 * 120.00272 * 179.97438 * 10 9 7 28 28 H 1.08998 * 109.47110 * 5.33657 * 15 5 4 29 29 H 1.09007 * 109.46822 * 59.99868 * 16 15 5 30 30 H 1.08995 * 109.47164 * 179.97438 * 16 15 5 31 31 H 1.08996 * 109.47014 * 300.00025 * 16 15 5 32 32 H 1.09000 * 109.46945 * 60.00017 * 17 15 5 33 33 H 1.09003 * 109.47061 * 180.02562 * 17 15 5 34 34 H 1.08993 * 109.47406 * 300.00525 * 17 15 5 35 35 H 1.08000 * 119.08295 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1913 0.0000 4 6 3.6012 1.1410 0.0060 5 7 4.3476 2.3082 0.0057 6 6 5.7936 2.2529 -0.2229 7 6 6.0736 2.3717 -1.6989 8 1 5.2562 2.4782 -2.3967 9 6 7.3733 2.3455 -2.1583 10 7 8.3687 2.2164 -1.3084 11 14 7.7204 2.4935 -3.9878 12 1 7.8853 3.9252 -4.3461 13 1 8.9657 1.7544 -4.3167 14 1 6.5863 1.9186 -4.7549 15 6 3.6908 3.5977 0.2343 16 6 4.3760 4.3202 1.3960 17 6 3.7932 4.4533 -1.0299 18 7 4.2023 -0.0453 0.0110 19 6 3.4955 -1.1573 0.0107 20 7 2.1778 -1.1432 0.0061 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6862 2.1380 -0.0040 25 1 6.2767 3.0746 0.3059 26 1 6.1837 1.3043 0.1457 27 1 9.2830 2.1976 -1.6316 28 1 2.6412 3.4327 0.4774 29 1 5.4257 4.4850 1.1528 30 1 3.8876 5.2797 1.5657 31 1 4.3031 3.7106 2.2966 32 1 3.3051 3.9385 -1.8575 33 1 3.3049 5.4129 -0.8598 34 1 4.8428 4.6181 -1.2731 35 1 4.0104 -2.1066 0.0153 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:10 Heat of formation + Delta-G solvation = 28.711133 kcal Electronic energy + Delta-G solvation = -16845.058157 eV Core-core repulsion = 14263.423526 eV Total energy + Delta-G solvation = -2581.634631 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.74325 -38.86468 -35.13990 -34.90096 -33.47998 -31.68174 -29.73424 -28.30020 -27.94736 -25.22216 -24.75753 -22.87725 -20.75621 -18.69520 -18.42197 -18.09977 -16.59761 -16.23063 -16.05615 -15.85751 -15.27689 -14.83047 -14.63122 -14.12784 -13.82801 -13.68204 -13.31007 -13.19974 -13.01955 -12.93776 -12.78893 -12.55837 -12.40519 -12.15256 -11.81620 -11.69655 -11.36251 -11.16528 -10.58765 -10.50981 -9.92180 -8.70610 -8.12013 -6.29493 0.28484 0.60262 1.34611 1.36692 1.46281 2.15038 2.40200 3.10549 3.11538 3.40947 3.57649 3.85154 4.02795 4.20192 4.26386 4.46265 4.52575 4.71680 4.79927 4.84289 4.84771 4.89306 4.99153 5.01623 5.13856 5.15630 5.25247 5.42328 5.52631 5.65848 5.75747 6.03186 6.15393 6.47091 6.75883 6.83157 7.37646 7.57306 8.88557 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022941 B = 0.008411 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.204150 B = 3328.194808 C = 3878.671647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.186 3.814 3 C -0.309 4.309 4 C 0.425 3.575 5 N -0.582 5.582 6 C 0.271 3.729 7 C -0.523 4.523 8 H 0.047 0.953 9 C 0.011 3.989 10 N -0.927 5.927 11 Si 0.956 3.044 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.277 1.277 15 C 0.138 3.862 16 C -0.154 4.154 17 C -0.151 4.151 18 N -0.610 5.610 19 C 0.325 3.675 20 N -0.590 5.590 21 H 0.092 0.908 22 H 0.083 0.917 23 H 0.099 0.901 24 H 0.161 0.839 25 H 0.019 0.981 26 H 0.011 0.989 27 H 0.265 0.735 28 H 0.107 0.893 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.520 2.224 3.317 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 C -0.338 4.338 4 C 0.182 3.818 5 N -0.291 5.291 6 C 0.149 3.851 7 C -0.562 4.562 8 H 0.066 0.934 9 C -0.188 4.188 10 N -0.568 5.568 11 Si 0.782 3.218 12 H -0.193 1.193 13 H -0.208 1.208 14 H -0.202 1.202 15 C 0.035 3.965 16 C -0.212 4.212 17 C -0.209 4.209 18 N -0.335 5.335 19 C 0.035 3.965 20 N -0.312 5.312 21 H 0.110 0.890 22 H 0.102 0.898 23 H 0.117 0.883 24 H 0.178 0.822 25 H 0.037 0.963 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.124 0.876 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.742 1.616 3.345 14.236 hybrid contribution 0.760 0.562 -0.981 1.362 sum -12.982 2.178 2.364 13.374 Atomic orbital electron populations 1.20792 0.85242 1.04794 1.04295 1.22002 0.98898 0.87261 0.87465 1.22157 0.92519 1.01821 1.17273 1.19032 0.89180 0.86927 0.86679 1.47185 1.08337 1.02876 1.70692 1.18725 0.75391 0.96052 0.94893 1.21635 0.91885 1.49347 0.93304 0.93435 1.25700 0.96000 0.95094 1.01960 1.70043 0.99522 1.51293 1.35918 0.85587 0.77397 0.78531 0.80307 1.19286 1.20759 1.20178 1.21328 0.97479 0.81735 0.95950 1.22110 1.00982 1.01238 0.96885 1.22103 1.02340 0.99798 0.96690 1.68068 1.42871 0.98978 1.23618 1.24995 0.87109 0.96119 0.88294 1.68296 1.09714 1.30606 1.22551 0.88957 0.89805 0.88253 0.82167 0.96306 0.97093 0.92648 0.87555 0.93975 0.88283 0.93063 0.93936 0.89077 0.93609 0.77745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 10.21 71.23 0.73 -1.08 16 2 C 0.19 5.67 6.81 42.42 0.29 5.96 16 3 C -0.31 -10.22 8.98 22.58 0.20 -10.01 16 4 C 0.42 17.86 7.35 133.16 0.98 18.84 16 5 N -0.58 -24.90 2.49 -683.65 -1.70 -26.60 16 6 C 0.27 14.28 4.85 85.63 0.42 14.69 16 7 C -0.52 -29.40 7.86 25.60 0.20 -29.20 16 8 H 0.05 2.70 7.59 -2.91 -0.02 2.68 16 9 C 0.01 0.63 5.46 84.65 0.46 1.09 16 10 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 11 Si 0.96 44.94 29.54 68.60 2.03 46.96 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 C 0.14 4.46 3.13 44.99 0.14 4.60 16 16 C -0.15 -4.54 9.06 71.98 0.65 -3.89 16 17 C -0.15 -4.84 8.62 71.98 0.62 -4.22 16 18 N -0.61 -27.55 9.23 -197.61 -1.82 -29.37 16 19 C 0.32 12.27 12.28 180.90 2.22 14.49 16 20 N -0.59 -20.45 10.37 -188.34 -1.95 -22.41 16 21 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 22 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.10 1.40 8.09 -2.39 -0.02 1.38 16 24 H 0.16 4.20 6.09 -2.91 -0.02 4.18 16 25 H 0.02 1.04 6.16 -2.38 -0.01 1.03 16 26 H 0.01 0.66 7.28 -2.39 -0.02 0.64 16 27 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 28 H 0.11 2.78 5.57 -2.39 -0.01 2.77 16 29 H 0.04 1.48 6.51 -2.38 -0.02 1.46 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.79 6.93 -2.39 -0.02 1.78 16 35 H 0.21 6.40 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -69.33 290.28 4.82 -64.52 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.07 Total: 10.86 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 6.91 Total: 11.27 kcal Atomic # 7 Polarization: -128.42 SS G_CDS: -5.19 Total: -133.61 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -69.33 4.82 -64.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.228 kcal (2) G-P(sol) polarization free energy of solvation -69.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds