Wall clock time and date at job start Mon Mar 30 2020 03:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46715 * 2 1 4 4 O 1.42899 * 109.46931 * 240.00546 * 2 1 3 5 5 C 1.53002 * 109.47166 * 120.00180 * 2 1 3 6 6 N 1.46898 * 109.47016 * 184.99921 * 5 2 1 7 7 C 1.46893 * 110.99967 * 180.02562 * 6 5 2 8 8 H 1.09002 * 109.47490 * 34.99719 * 7 6 5 9 9 C 1.50706 * 109.47052 * 274.99963 * 7 6 5 10 10 H 1.07996 * 119.99776 * 294.97681 * 9 7 6 11 11 C 1.37884 * 119.99919 * 114.97677 * 9 7 6 12 12 N 1.31510 * 119.99743 * 184.83686 * 11 9 7 13 13 Si 1.86803 * 119.99869 * 4.83879 * 11 9 7 14 14 H 1.48503 * 109.46824 * 84.70206 * 13 11 9 15 15 H 1.48496 * 109.46756 * 204.69896 * 13 11 9 16 16 H 1.48495 * 109.47347 * 324.69874 * 13 11 9 17 17 C 1.50701 * 109.47526 * 155.00220 * 7 6 5 18 18 C 1.38231 * 119.99764 * 44.78877 * 17 7 6 19 19 C 1.38238 * 120.00025 * 179.79324 * 18 17 7 20 20 C 1.38242 * 119.99683 * 0.44160 * 19 18 17 21 21 C 1.38241 * 119.99982 * 359.81042 * 20 19 18 22 22 C 1.38235 * 120.00011 * 359.97438 * 21 20 19 23 23 H 1.08998 * 109.47428 * 59.99548 * 1 2 3 24 24 H 1.08996 * 109.47056 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46759 * 299.99935 * 1 2 3 26 26 H 0.96694 * 114.00512 * 59.99909 * 4 2 1 27 27 H 1.08994 * 109.46931 * 304.99905 * 5 2 1 28 28 H 1.08999 * 109.46548 * 64.99815 * 5 2 1 29 29 H 1.00897 * 110.99831 * 56.04890 * 6 5 2 30 30 H 0.96998 * 120.00147 * 180.02562 * 12 11 9 31 31 H 1.07996 * 120.00021 * 359.97438 * 18 17 7 32 32 H 1.07997 * 120.00288 * 180.27165 * 19 18 17 33 33 H 1.07999 * 119.99826 * 179.83624 * 20 19 18 34 34 H 1.07999 * 119.99573 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.99968 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0401 -0.7213 1.2492 6 7 3.5041 -0.6176 1.3111 7 6 4.0304 -1.3009 2.5001 8 1 3.4262 -2.1837 2.7092 9 6 3.9790 -0.3658 3.6808 10 1 4.5851 0.5280 3.6885 11 6 3.1581 -0.6515 4.7512 12 7 3.0406 0.2099 5.7380 13 14 2.2130 -2.2621 4.7998 14 1 3.0825 -3.3296 5.3562 15 1 1.0113 -2.1050 5.6578 16 1 1.7941 -2.6318 3.4240 17 6 5.4573 -1.7165 2.2504 18 6 6.3419 -0.8320 1.6622 19 6 7.6519 -1.2117 1.4369 20 6 8.0749 -2.4791 1.7916 21 6 7.1889 -3.3654 2.3751 22 6 5.8800 -2.9842 2.6044 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7210 -0.2700 -1.9980 27 1 1.6055 -0.2618 2.1369 28 1 1.7516 -1.7715 1.2055 29 1 3.7996 0.3468 1.2874 30 1 2.4634 0.0089 6.4912 31 1 6.0103 0.1567 1.3812 32 1 8.3442 -0.5191 0.9814 33 1 9.0976 -2.7766 1.6133 34 1 7.5195 -4.3554 2.6525 35 1 5.1878 -3.6767 3.0598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055016585.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:26 Heat of formation + Delta-G solvation = -54.619408 kcal Electronic energy + Delta-G solvation = -16612.237562 eV Core-core repulsion = 13994.696696 eV Total energy + Delta-G solvation = -2617.540865 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11700 -38.69517 -36.78878 -34.36684 -32.85803 -31.62089 -31.05983 -28.70524 -26.10548 -24.15849 -23.23285 -22.09230 -21.33550 -19.28778 -18.25623 -17.65424 -16.72978 -16.34180 -16.02894 -15.47621 -15.30738 -14.84419 -14.56382 -14.33611 -14.09056 -13.78134 -13.69310 -13.35302 -13.23005 -12.92745 -12.78589 -12.65640 -12.03207 -11.89605 -11.75955 -11.49452 -11.24314 -10.84682 -10.82211 -9.63549 -9.42467 -8.98962 -8.40415 -6.45316 0.68635 0.75292 1.24232 1.26476 1.34078 2.22106 2.90389 3.17440 3.45121 3.55170 4.08604 4.15384 4.24614 4.28194 4.35345 4.40282 4.51802 4.59677 4.71765 4.82884 4.90743 4.93099 5.01493 5.08342 5.27404 5.29778 5.39271 5.41774 5.75090 5.79625 5.97583 6.05495 6.32157 6.42191 6.61437 6.76338 7.07088 7.22248 8.75689 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.010837 C = 0.007477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.593408 B = 2583.130422 C = 3743.728698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.111 3.889 3 H 0.057 0.943 4 O -0.571 6.571 5 C 0.067 3.933 6 N -0.670 5.670 7 C 0.207 3.793 8 H 0.043 0.957 9 C -0.528 4.528 10 H 0.038 0.962 11 C 0.028 3.972 12 N -0.936 5.936 13 Si 0.924 3.076 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.247 1.247 17 C -0.049 4.049 18 C -0.121 4.121 19 C -0.125 4.125 20 C -0.142 4.142 21 C -0.121 4.121 22 C -0.156 4.156 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.387 0.613 27 H 0.028 0.972 28 H 0.052 0.948 29 H 0.330 0.670 30 H 0.268 0.732 31 H 0.108 0.892 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 -3.543 -11.328 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.052 3.948 3 H 0.075 0.925 4 O -0.378 6.378 5 C -0.063 4.063 6 N -0.299 5.299 7 C 0.099 3.901 8 H 0.061 0.939 9 C -0.568 4.568 10 H 0.056 0.944 11 C -0.171 4.171 12 N -0.575 5.575 13 Si 0.749 3.251 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.171 1.171 17 C -0.050 4.050 18 C -0.140 4.140 19 C -0.143 4.143 20 C -0.160 4.160 21 C -0.139 4.139 22 C -0.174 4.174 23 H 0.104 0.896 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.235 0.765 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.147 0.853 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.798 -4.438 -11.132 12.011 hybrid contribution -1.175 0.669 1.136 1.766 sum -0.377 -3.769 -9.996 10.689 Atomic orbital electron populations 1.22430 0.94800 1.02816 1.03526 1.21702 0.93333 0.94687 0.85107 0.92482 1.86633 1.77401 1.57566 1.16171 1.21879 0.89446 0.99663 0.95292 1.61011 1.08686 1.19469 1.40761 1.18552 0.89942 0.94023 0.87599 0.93869 1.21670 1.24557 1.07581 1.02967 0.94397 1.25836 0.97027 0.99399 0.94884 1.70026 1.39924 1.37171 1.10392 0.86114 0.78967 0.80913 0.79148 1.19025 1.20804 1.17138 1.20238 0.96784 0.93569 0.94440 1.20932 0.93998 0.99213 0.99850 1.21401 0.95286 0.97363 1.00204 1.21341 1.00475 0.93781 1.00428 1.21315 0.92682 1.00650 0.99263 1.21125 0.97544 0.96071 1.02681 0.89618 0.92342 0.91790 0.76492 0.95400 0.92946 0.85284 0.92314 0.87346 0.84139 0.83361 0.84004 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.25 9.53 71.98 0.69 -3.56 16 2 C 0.11 3.35 3.76 30.60 0.11 3.47 16 3 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 4 O -0.57 -16.92 13.27 -148.98 -1.98 -18.90 16 5 C 0.07 2.66 5.15 86.30 0.44 3.11 16 6 N -0.67 -28.98 5.76 -499.37 -2.88 -31.85 16 7 C 0.21 9.94 2.15 43.43 0.09 10.04 16 8 H 0.04 2.13 3.98 -2.39 -0.01 2.12 16 9 C -0.53 -29.53 8.61 25.60 0.22 -29.31 16 10 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 11 C 0.03 1.62 5.47 84.66 0.46 2.08 16 12 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 13 Si 0.92 43.69 27.25 68.60 1.87 45.55 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 16 H -0.25 -11.04 6.31 99.48 0.63 -10.41 16 17 C -0.05 -2.20 4.93 -19.87 -0.10 -2.29 16 18 C -0.12 -4.90 9.28 22.27 0.21 -4.69 16 19 C -0.12 -4.11 10.05 22.27 0.22 -3.88 16 20 C -0.14 -4.27 10.05 22.27 0.22 -4.05 16 21 C -0.12 -3.98 10.05 22.27 0.22 -3.75 16 22 C -0.16 -6.29 9.67 22.27 0.22 -6.07 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.39 7.19 9.08 -74.06 -0.67 6.52 16 27 H 0.03 1.21 8.00 -2.39 -0.02 1.19 16 28 H 0.05 2.17 7.98 -2.39 -0.02 2.16 16 29 H 0.33 14.19 7.89 -89.70 -0.71 13.49 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.11 4.35 7.42 -2.91 -0.02 4.33 16 32 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.11 4.20 8.00 -2.91 -0.02 4.18 16 Total: -1.00 -67.63 294.89 -0.04 -67.67 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.37 Total: 33.24 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 3.02 Total: -38.92 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -2.58 Total: -88.65 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -1.98 Total: -18.90 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.87 Total: 45.55 kcal Total: -67.63 -0.04 -67.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016585.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.054 kcal (2) G-P(sol) polarization free energy of solvation -67.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds