Wall clock time and date at job start Mon Mar 30 2020 03:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47165 * 2 1 4 4 O 1.42903 * 109.47414 * 119.99803 * 2 1 3 5 5 C 1.53002 * 109.47165 * 240.00278 * 2 1 3 6 6 N 1.46906 * 109.47146 * 180.02562 * 5 2 1 7 7 C 1.46895 * 110.99966 * 179.97438 * 6 5 2 8 8 H 1.09001 * 109.47534 * 34.99880 * 7 6 5 9 9 C 1.50698 * 109.47217 * 274.99718 * 7 6 5 10 10 H 1.07999 * 120.00389 * 294.98452 * 9 7 6 11 11 C 1.37878 * 120.00161 * 114.97599 * 9 7 6 12 12 N 1.31514 * 120.00327 * 184.83985 * 11 9 7 13 13 Si 1.86807 * 119.99886 * 4.84067 * 11 9 7 14 14 H 1.48497 * 109.47050 * 84.69392 * 13 11 9 15 15 H 1.48491 * 109.47049 * 204.69898 * 13 11 9 16 16 H 1.48496 * 109.46849 * 324.69972 * 13 11 9 17 17 C 1.50702 * 109.47101 * 154.99989 * 7 6 5 18 18 C 1.38237 * 119.99971 * 44.79036 * 17 7 6 19 19 C 1.38233 * 119.99804 * 179.80792 * 18 17 7 20 20 C 1.38234 * 119.99895 * 0.40556 * 19 18 17 21 21 C 1.38233 * 120.00165 * 359.84559 * 20 19 18 22 22 C 1.38230 * 119.99828 * 225.06585 * 17 7 6 23 23 H 1.08996 * 109.47169 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47030 * 300.00263 * 1 2 3 25 25 H 1.08998 * 109.47047 * 59.99983 * 1 2 3 26 26 H 0.96700 * 113.99755 * 60.00255 * 4 2 1 27 27 H 1.08996 * 109.47145 * 299.99455 * 5 2 1 28 28 H 1.08998 * 109.47351 * 59.99926 * 5 2 1 29 29 H 1.00900 * 110.99822 * 56.03844 * 6 5 2 30 30 H 0.97001 * 119.99881 * 180.02562 * 12 11 9 31 31 H 1.07997 * 119.99879 * 359.97438 * 18 17 7 32 32 H 1.07997 * 119.99981 * 180.23032 * 19 18 17 33 33 H 1.07997 * 119.99932 * 179.83436 * 20 19 18 34 34 H 1.08004 * 120.00153 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.00360 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2493 6 7 3.5090 -0.7217 -1.2490 7 6 4.0355 -1.4079 -2.4364 8 1 3.3801 -1.2179 -3.2863 9 6 4.0994 -2.8903 -2.1728 10 1 4.7664 -3.2761 -1.4161 11 6 3.3061 -3.7542 -2.8977 12 7 3.2907 -5.0360 -2.6040 13 14 2.2530 -3.1039 -4.2969 14 1 3.0679 -3.0286 -5.5360 15 1 1.1023 -4.0165 -4.5158 16 1 1.7519 -1.7495 -3.9510 17 6 5.4179 -0.8922 -2.7429 18 6 6.3370 -0.7301 -1.7232 19 6 7.6064 -0.2608 -2.0050 20 6 7.9539 0.0542 -3.3053 21 6 7.0331 -0.1030 -4.3243 22 6 5.7650 -0.5760 -4.0430 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7211 -1.5952 1.2329 27 1 1.6768 -1.7488 -1.2493 28 1 1.6767 -0.2074 -2.1393 29 1 3.8703 -1.1355 -0.4026 30 1 2.7329 -5.6438 -3.1143 31 1 6.0642 -0.9726 -0.7067 32 1 8.3256 -0.1377 -1.2088 33 1 8.9447 0.4234 -3.5251 34 1 7.3045 0.1436 -5.3401 35 1 5.0457 -0.6988 -4.8392 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055016587.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:28 Heat of formation + Delta-G solvation = -36.109144 kcal Electronic energy + Delta-G solvation = -16658.982052 eV Core-core repulsion = 14042.243852 eV Total energy + Delta-G solvation = -2616.738200 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.63955 -37.52734 -35.05222 -32.33079 -31.30414 -30.20729 -29.78703 -26.94241 -24.44807 -22.54069 -21.83079 -20.96265 -19.71914 -17.35437 -16.34908 -15.79936 -15.52210 -14.79912 -14.56413 -14.33379 -13.72854 -13.37770 -12.92474 -12.71020 -12.66811 -12.33225 -12.10698 -11.90865 -11.71822 -11.48019 -11.07729 -11.01246 -10.57132 -10.39227 -10.22120 -9.86644 -9.57887 -9.38393 -8.77488 -8.20239 -7.91648 -7.30020 -6.28121 -4.30070 2.12927 2.19750 3.12539 3.19578 3.22442 4.21412 4.53003 4.69968 5.00256 5.14027 5.37224 5.50025 5.54766 5.57671 5.65510 5.75276 5.88779 5.98840 6.08964 6.20540 6.26931 6.31170 6.41869 6.47757 6.65960 6.76398 6.85755 7.15978 7.25068 7.38848 7.53836 7.77903 7.95835 8.03914 8.25909 8.55262 8.78102 9.33645 10.84283 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.010379 C = 0.007611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.615051 B = 2697.037768 C = 3678.033377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.099 0.901 4 O -0.564 6.564 5 C 0.033 3.967 6 N -0.682 5.682 7 C 0.199 3.801 8 H 0.052 0.948 9 C -0.533 4.533 10 H 0.078 0.922 11 C 0.079 3.921 12 N -0.888 5.888 13 Si 0.869 3.131 14 H -0.272 1.272 15 H -0.287 1.287 16 H -0.261 1.261 17 C -0.015 4.015 18 C -0.103 4.103 19 C -0.125 4.125 20 C -0.151 4.151 21 C -0.123 4.123 22 C -0.133 4.133 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.373 0.627 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.340 0.660 30 H 0.266 0.734 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 8.980 0.814 9.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.045 3.955 3 H 0.116 0.884 4 O -0.369 6.369 5 C -0.097 4.097 6 N -0.313 5.313 7 C 0.092 3.908 8 H 0.070 0.930 9 C -0.572 4.572 10 H 0.096 0.904 11 C -0.125 4.125 12 N -0.525 5.525 13 Si 0.696 3.304 14 H -0.197 1.197 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.016 4.016 18 C -0.122 4.122 19 C -0.143 4.143 20 C -0.169 4.169 21 C -0.141 4.141 22 C -0.152 4.152 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.220 0.780 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.159 0.841 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.604 10.004 0.594 10.040 hybrid contribution -1.021 -1.446 -0.908 1.990 sum -1.625 8.558 -0.314 8.716 Atomic orbital electron populations 1.22481 0.97213 1.02372 1.02116 1.21983 0.91665 0.97085 0.84792 0.88355 1.86529 1.77440 1.28958 1.43970 1.22471 0.91124 0.99002 0.97152 1.61006 1.04952 1.58887 1.06456 1.18714 0.88897 0.92351 0.90857 0.93007 1.21530 1.24594 0.89347 1.21692 0.90425 1.25113 0.96099 0.94756 0.96549 1.69899 1.39610 1.02925 1.40047 0.87022 0.80693 0.79133 0.83560 1.19729 1.21290 1.18646 1.20243 0.97377 0.91678 0.92339 1.20862 0.92753 0.99264 0.99287 1.21031 0.96572 1.00515 0.96203 1.20843 0.98899 1.03757 0.93391 1.20923 0.94008 1.00881 0.98315 1.20932 0.96519 1.01203 0.96537 0.92414 0.92189 0.91867 0.77991 0.94501 0.91822 0.84142 0.92380 0.86603 0.87217 0.87406 0.87283 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 9.53 37.16 0.35 -1.98 16 2 C 0.10 1.60 3.86 -26.73 -0.10 1.49 16 3 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 4 O -0.56 -9.00 12.67 -35.23 -0.45 -9.45 16 5 C 0.03 0.61 5.19 -3.82 -0.02 0.59 16 6 N -0.68 -13.97 5.81 -109.19 -0.63 -14.60 16 7 C 0.20 4.56 2.15 -70.02 -0.15 4.41 16 8 H 0.05 1.22 3.98 -51.93 -0.21 1.01 16 9 C -0.53 -14.11 8.60 -34.44 -0.30 -14.41 16 10 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 11 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 12 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 13 Si 0.87 20.44 27.25 -169.99 -4.63 15.81 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.26 -5.81 6.31 56.52 0.36 -5.45 16 17 C -0.02 -0.33 4.93 -104.62 -0.52 -0.85 16 18 C -0.10 -2.06 9.28 -39.58 -0.37 -2.43 16 19 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 20 C -0.15 -2.50 10.05 -39.58 -0.40 -2.90 16 21 C -0.12 -2.15 10.05 -39.58 -0.40 -2.54 16 22 C -0.13 -2.67 9.67 -39.59 -0.38 -3.06 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.37 5.11 9.05 45.56 0.41 5.52 16 27 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 28 H 0.06 1.18 7.98 -51.93 -0.41 0.77 16 29 H 0.34 7.11 7.28 -39.29 -0.29 6.82 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.12 2.27 7.42 -52.49 -0.39 1.88 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 35 H 0.11 2.09 8.00 -52.49 -0.42 1.67 16 LS Contribution 293.85 15.07 4.43 4.43 Total: -1.00 -29.11 293.85 -7.57 -36.67 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -4.28 Total: 14.46 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -2.77 Total: -22.19 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.14 Total: -39.73 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.45 Total: -9.45 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.63 Total: 15.81 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.11 -7.57 -36.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016587.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.564 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds