Wall clock time and date at job start Mon Mar 30 2020 03:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47165 * 2 1 4 4 O 1.42903 * 109.47414 * 119.99803 * 2 1 3 5 5 C 1.53002 * 109.47165 * 240.00278 * 2 1 3 6 6 N 1.46906 * 109.47146 * 180.02562 * 5 2 1 7 7 C 1.46895 * 110.99966 * 179.97438 * 6 5 2 8 8 H 1.09001 * 109.47534 * 34.99880 * 7 6 5 9 9 C 1.50698 * 109.47217 * 274.99718 * 7 6 5 10 10 H 1.07999 * 120.00389 * 294.98452 * 9 7 6 11 11 C 1.37878 * 120.00161 * 114.97599 * 9 7 6 12 12 N 1.31514 * 120.00327 * 184.83985 * 11 9 7 13 13 Si 1.86807 * 119.99886 * 4.84067 * 11 9 7 14 14 H 1.48497 * 109.47050 * 84.69392 * 13 11 9 15 15 H 1.48491 * 109.47049 * 204.69898 * 13 11 9 16 16 H 1.48496 * 109.46849 * 324.69972 * 13 11 9 17 17 C 1.50702 * 109.47101 * 154.99989 * 7 6 5 18 18 C 1.38237 * 119.99971 * 44.79036 * 17 7 6 19 19 C 1.38233 * 119.99804 * 179.80792 * 18 17 7 20 20 C 1.38234 * 119.99895 * 0.40556 * 19 18 17 21 21 C 1.38233 * 120.00165 * 359.84559 * 20 19 18 22 22 C 1.38230 * 119.99828 * 225.06585 * 17 7 6 23 23 H 1.08996 * 109.47169 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47030 * 300.00263 * 1 2 3 25 25 H 1.08998 * 109.47047 * 59.99983 * 1 2 3 26 26 H 0.96700 * 113.99755 * 60.00255 * 4 2 1 27 27 H 1.08996 * 109.47145 * 299.99455 * 5 2 1 28 28 H 1.08998 * 109.47351 * 59.99926 * 5 2 1 29 29 H 1.00900 * 110.99822 * 56.03844 * 6 5 2 30 30 H 0.97001 * 119.99881 * 180.02562 * 12 11 9 31 31 H 1.07997 * 119.99879 * 359.97438 * 18 17 7 32 32 H 1.07997 * 119.99981 * 180.23032 * 19 18 17 33 33 H 1.07997 * 119.99932 * 179.83436 * 20 19 18 34 34 H 1.08004 * 120.00153 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.00360 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2493 6 7 3.5090 -0.7217 -1.2490 7 6 4.0355 -1.4079 -2.4364 8 1 3.3801 -1.2179 -3.2863 9 6 4.0994 -2.8903 -2.1728 10 1 4.7664 -3.2761 -1.4161 11 6 3.3061 -3.7542 -2.8977 12 7 3.2907 -5.0360 -2.6040 13 14 2.2530 -3.1039 -4.2969 14 1 3.0679 -3.0286 -5.5360 15 1 1.1023 -4.0165 -4.5158 16 1 1.7519 -1.7495 -3.9510 17 6 5.4179 -0.8922 -2.7429 18 6 6.3370 -0.7301 -1.7232 19 6 7.6064 -0.2608 -2.0050 20 6 7.9539 0.0542 -3.3053 21 6 7.0331 -0.1030 -4.3243 22 6 5.7650 -0.5760 -4.0430 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7211 -1.5952 1.2329 27 1 1.6768 -1.7488 -1.2493 28 1 1.6767 -0.2074 -2.1393 29 1 3.8703 -1.1355 -0.4026 30 1 2.7329 -5.6438 -3.1143 31 1 6.0642 -0.9726 -0.7067 32 1 8.3256 -0.1377 -1.2088 33 1 8.9447 0.4234 -3.5251 34 1 7.3045 0.1436 -5.3401 35 1 5.0457 -0.6988 -4.8392 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055016587.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:28 Heat of formation + Delta-G solvation = -56.995745 kcal Electronic energy + Delta-G solvation = -16659.887763 eV Core-core repulsion = 14042.243852 eV Total energy + Delta-G solvation = -2617.643911 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.13720 -38.86192 -36.67137 -34.30044 -32.74616 -31.62906 -31.12041 -28.69880 -26.04081 -24.14484 -23.24218 -22.32437 -21.34380 -19.33521 -17.82569 -17.13090 -16.96283 -16.57895 -15.98871 -15.89029 -15.13609 -14.94584 -14.70019 -14.16077 -14.06135 -13.84855 -13.70945 -13.46095 -12.97637 -12.90522 -12.82036 -12.55552 -12.07604 -11.86021 -11.76067 -11.61474 -11.24325 -10.99050 -10.73051 -9.64138 -9.43843 -9.00696 -8.39307 -6.44620 0.68122 0.74558 1.24422 1.27200 1.34621 2.22731 2.90728 3.17105 3.40336 3.70421 4.12663 4.14088 4.26200 4.29210 4.33609 4.40264 4.51328 4.59100 4.71999 4.84159 4.89958 4.92167 4.93801 5.19696 5.27922 5.33432 5.38879 5.43193 5.74914 5.79702 5.97251 6.06002 6.31919 6.43175 6.62249 6.75057 6.84633 7.22777 8.76834 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.010379 C = 0.007611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.615051 B = 2697.037768 C = 3678.033377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 H 0.102 0.898 4 O -0.576 6.576 5 C 0.031 3.969 6 N -0.675 5.675 7 C 0.208 3.792 8 H 0.047 0.953 9 C -0.528 4.528 10 H 0.033 0.967 11 C 0.026 3.974 12 N -0.938 5.938 13 Si 0.927 3.073 14 H -0.266 1.266 15 H -0.285 1.285 16 H -0.242 1.242 17 C -0.050 4.050 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.142 4.142 21 C -0.121 4.121 22 C -0.154 4.154 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.381 0.619 27 H 0.015 0.985 28 H 0.067 0.933 29 H 0.335 0.665 30 H 0.267 0.733 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.428 11.217 -0.175 11.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.052 3.948 3 H 0.119 0.881 4 O -0.383 6.383 5 C -0.099 4.099 6 N -0.304 5.304 7 C 0.099 3.901 8 H 0.065 0.935 9 C -0.567 4.567 10 H 0.052 0.948 11 C -0.174 4.174 12 N -0.577 5.577 13 Si 0.752 3.248 14 H -0.191 1.191 15 H -0.211 1.211 16 H -0.166 1.166 17 C -0.051 4.051 18 C -0.141 4.141 19 C -0.143 4.143 20 C -0.160 4.160 21 C -0.139 4.139 22 C -0.172 4.172 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.229 0.771 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.157 0.843 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.198 12.265 -0.385 12.272 hybrid contribution -1.008 -2.109 -0.529 2.397 sum -1.207 10.156 -0.915 10.268 Atomic orbital electron populations 1.22407 0.94698 1.02823 1.03487 1.21947 0.93529 0.96435 0.82904 0.88061 1.86503 1.77948 1.29740 1.44066 1.22606 0.89797 0.98235 0.99244 1.61015 1.06258 1.57744 1.05433 1.18557 0.90234 0.90015 0.91290 0.93499 1.21656 1.23055 0.91719 1.20261 0.94827 1.25880 0.97595 0.94768 0.99109 1.70043 1.41379 1.04442 1.41831 0.86069 0.79032 0.79419 0.80323 1.19120 1.21102 1.16556 1.20248 0.96912 0.94155 0.93767 1.20934 0.94082 1.00468 0.98640 1.21390 0.95842 0.99210 0.97883 1.21334 1.00350 1.01817 0.92503 1.21323 0.92837 0.99360 1.00352 1.21128 0.98126 1.02157 0.95820 0.92446 0.90629 0.90675 0.77057 0.96699 0.91483 0.84730 0.92391 0.87607 0.84325 0.83431 0.83948 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.10 9.53 71.98 0.69 -3.42 16 2 C 0.11 3.29 3.86 30.59 0.12 3.40 16 3 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 4 O -0.58 -18.15 12.67 -148.98 -1.89 -20.03 16 5 C 0.03 1.16 5.19 86.30 0.45 1.60 16 6 N -0.67 -28.02 5.81 -499.36 -2.90 -30.92 16 7 C 0.21 9.63 2.15 43.42 0.09 9.72 16 8 H 0.05 2.20 3.98 -2.39 -0.01 2.19 16 9 C -0.53 -29.12 8.60 25.60 0.22 -28.90 16 10 H 0.03 2.10 8.06 -2.91 -0.02 2.07 16 11 C 0.03 1.46 5.47 84.65 0.46 1.93 16 12 N -0.94 -56.82 13.96 21.45 0.30 -56.52 16 13 Si 0.93 42.57 27.25 68.60 1.87 44.44 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.24 -10.19 6.31 99.48 0.63 -9.56 16 17 C -0.05 -2.16 4.93 -19.87 -0.10 -2.26 16 18 C -0.12 -4.89 9.28 22.27 0.21 -4.69 16 19 C -0.13 -4.09 10.05 22.27 0.22 -3.86 16 20 C -0.14 -4.17 10.05 22.27 0.22 -3.95 16 21 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 22 C -0.15 -5.98 9.67 22.27 0.22 -5.76 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.38 10.48 9.05 -74.06 -0.67 9.81 16 27 H 0.01 0.61 8.00 -2.39 -0.02 0.59 16 28 H 0.07 2.41 7.98 -2.39 -0.02 2.39 16 29 H 0.34 14.49 7.28 -89.69 -0.65 13.84 16 30 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 31 H 0.11 4.29 7.42 -2.91 -0.02 4.26 16 32 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 33 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 34 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.11 4.10 8.00 -2.91 -0.02 4.07 16 Total: -1.00 -64.60 293.85 0.08 -64.51 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: -0.32 Total: 38.31 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 3.02 Total: -39.78 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.60 Total: -87.44 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -1.89 Total: -20.03 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.87 Total: 44.44 kcal Total: -64.60 0.08 -64.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016587.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.519 kcal (2) G-P(sol) polarization free energy of solvation -64.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds