Wall clock time and date at job start Mon Mar 30 2020 03:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38627 * 120.39756 * 2 1 4 4 C 1.38587 * 118.55913 * 179.97438 * 3 2 1 5 5 N 1.32293 * 119.19423 * 359.97438 * 4 3 2 6 6 C 1.32479 * 120.74171 * 0.02562 * 5 4 3 7 7 N 1.38411 * 119.21653 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99924 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47413 * 89.99946 * 8 7 6 10 10 H 1.07996 * 119.99912 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99692 * 179.97438 * 9 8 7 12 12 N 1.31506 * 120.00246 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99563 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47149 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46794 * 120.00127 * 13 11 9 16 16 H 1.48508 * 109.47042 * 239.99958 * 13 11 9 17 17 C 1.46502 * 119.99843 * 359.97438 * 7 6 5 18 18 C 1.53001 * 109.46555 * 120.00046 * 17 7 6 19 19 C 1.52999 * 109.47251 * 240.00189 * 17 7 6 20 20 N 1.32258 * 120.40243 * 179.71737 * 2 1 3 21 21 H 1.08999 * 109.47015 * 90.00471 * 1 2 3 22 22 H 1.09000 * 109.46646 * 209.99623 * 1 2 3 23 23 H 1.09000 * 109.47248 * 330.00341 * 1 2 3 24 24 H 1.08002 * 120.72588 * 359.95309 * 3 2 1 25 25 H 1.07995 * 120.39993 * 179.97438 * 4 3 2 26 26 H 1.09004 * 109.46669 * 210.00029 * 8 7 6 27 27 H 1.08999 * 109.47027 * 329.99203 * 8 7 6 28 28 H 0.96999 * 120.00334 * 179.97438 * 12 11 9 29 29 H 1.08998 * 109.47192 * 0.02562 * 17 7 6 30 30 H 1.08998 * 109.47143 * 60.00248 * 18 17 7 31 31 H 1.09001 * 109.46620 * 179.97438 * 18 17 7 32 32 H 1.08993 * 109.47346 * 300.00155 * 18 17 7 33 33 H 1.09001 * 109.47057 * 60.00145 * 19 17 7 34 34 H 1.09001 * 109.46805 * 180.02562 * 19 17 7 35 35 H 1.08998 * 109.47134 * 300.00172 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2085 1.1957 0.0000 4 6 3.5937 1.1512 0.0005 5 7 4.2016 -0.0237 0.0016 6 6 3.5015 -1.1484 0.0015 7 7 4.1700 -2.3604 0.0032 8 6 3.4128 -3.6146 0.0026 9 6 3.1553 -4.0454 -1.4184 10 1 3.5189 -3.4448 -2.2390 11 6 2.4556 -5.2062 -1.6707 12 7 2.0133 -5.9378 -0.6714 13 14 2.1358 -5.7398 -3.4321 14 1 2.7326 -4.7506 -4.3651 15 1 2.7483 -7.0725 -3.6644 16 1 0.6716 -5.8202 -3.6669 17 6 5.6347 -2.3890 0.0043 18 6 6.1295 -3.1189 1.2546 19 6 6.1315 -3.1211 -1.2439 20 7 2.1764 -1.1407 0.0056 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6869 2.1414 -0.0008 25 1 4.1698 2.0647 0.0001 26 1 3.9862 -4.3853 0.5177 27 1 2.4624 -3.4654 0.5150 28 1 1.5207 -6.7543 -0.8489 29 1 6.0180 -1.3686 0.0041 30 1 5.7461 -4.1393 1.2552 31 1 7.2193 -3.1406 1.2553 32 1 5.7755 -2.5973 2.1438 33 1 5.7790 -2.6011 -2.1346 34 1 7.2213 -3.1427 -1.2427 35 1 5.7482 -4.1415 -1.2433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061858723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:12 Heat of formation + Delta-G solvation = 51.161626 kcal Electronic energy + Delta-G solvation = -16917.942383 eV Core-core repulsion = 14337.281279 eV Total energy + Delta-G solvation = -2580.661104 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26426 -37.04210 -33.67432 -32.78403 -32.31674 -29.81973 -28.19204 -26.82028 -26.51713 -23.49144 -22.30323 -21.98065 -19.13053 -16.94712 -16.67888 -16.33646 -15.01197 -14.59809 -14.57155 -14.04484 -13.71916 -13.20035 -12.96593 -12.65213 -12.42186 -12.25444 -11.92271 -11.62589 -11.48960 -11.20433 -10.98358 -10.75861 -10.58271 -10.35210 -10.10282 -9.97711 -9.84536 -9.62886 -9.10884 -8.42772 -8.25842 -6.96011 -5.99040 -4.03233 1.82233 1.90163 3.29853 3.37611 3.41687 3.62744 4.44840 4.59426 4.77947 5.00176 5.28800 5.33974 5.54340 5.70601 5.73405 5.76669 5.83535 5.89243 5.92984 6.16039 6.21689 6.29397 6.39217 6.42312 6.48345 6.72972 6.89680 7.10794 7.19247 7.50404 7.70706 7.89603 8.00625 8.29371 8.44576 8.95778 9.16788 9.60032 11.06989 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.009955 C = 0.007511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.238952 B = 2812.099000 C = 3726.726344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.214 3.786 3 C -0.324 4.324 4 C 0.186 3.814 5 N -0.592 5.592 6 C 0.575 3.425 7 N -0.556 5.556 8 C 0.255 3.745 9 C -0.512 4.512 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.892 3.108 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.148 3.852 18 C -0.159 4.159 19 C -0.154 4.154 20 N -0.547 5.547 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.129 0.871 25 H 0.154 0.846 26 H 0.035 0.965 27 H 0.048 0.952 28 H 0.261 0.739 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 10.759 2.208 11.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.063 3.937 3 C -0.351 4.351 4 C 0.018 3.982 5 N -0.316 5.316 6 C 0.220 3.780 7 N -0.267 5.267 8 C 0.135 3.865 9 C -0.552 4.552 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.535 5.535 13 Si 0.721 3.279 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.210 1.210 17 C 0.043 3.957 18 C -0.217 4.217 19 C -0.212 4.212 20 N -0.270 5.270 21 H 0.098 0.902 22 H 0.098 0.902 23 H 0.091 0.909 24 H 0.147 0.853 25 H 0.171 0.829 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.138 9.418 2.262 10.181 hybrid contribution -0.724 0.466 -1.085 1.385 sum 2.414 9.883 1.177 10.242 Atomic orbital electron populations 1.20712 0.88983 1.03187 1.03143 1.21390 0.96774 0.87836 0.87668 1.22076 0.96316 0.99455 1.17259 1.22661 0.91907 0.94877 0.88778 1.67872 1.40956 0.98166 1.24616 1.19391 0.85092 0.86441 0.87103 1.47009 1.04891 1.02897 1.71878 1.19327 0.91726 0.77939 0.97469 1.21468 1.34559 1.06858 0.92276 0.92572 1.24886 0.95643 0.96512 0.96999 1.69935 1.37945 1.15193 1.30423 0.86531 0.77987 0.78311 0.85119 1.19964 1.21058 1.21011 1.20915 0.79530 1.00449 0.94758 1.22152 1.00231 1.01728 0.97620 1.22131 0.98861 1.02912 0.97331 1.67961 1.07810 1.29656 1.21524 0.90216 0.90174 0.90917 0.85279 0.82887 0.94762 0.93450 0.92926 0.89020 0.91660 0.92260 0.93153 0.92997 0.93269 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 10.22 36.01 0.37 -1.08 16 2 C 0.21 3.88 6.82 -82.26 -0.56 3.32 16 3 C -0.32 -4.97 9.85 -39.31 -0.39 -5.36 16 4 C 0.19 2.97 11.30 -17.22 -0.19 2.77 16 5 N -0.59 -11.64 8.85 -13.93 -0.12 -11.76 16 6 C 0.57 12.88 8.18 -322.80 -2.64 10.25 16 7 N -0.56 -12.61 2.49 -169.79 -0.42 -13.04 16 8 C 0.25 6.61 4.60 -5.19 -0.02 6.59 16 9 C -0.51 -14.24 7.83 -34.44 -0.27 -14.51 16 10 H 0.06 1.61 7.63 -52.49 -0.40 1.21 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 13 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 14 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.15 2.83 3.27 -67.93 -0.22 2.61 16 18 C -0.16 -2.68 9.17 37.16 0.34 -2.34 16 19 C -0.15 -2.88 8.47 37.16 0.31 -2.56 16 20 N -0.55 -12.32 9.05 -10.15 -0.09 -12.42 16 21 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 23 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 24 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 25 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 26 H 0.03 0.91 6.43 -51.93 -0.33 0.58 16 27 H 0.05 1.36 7.33 -51.93 -0.38 0.98 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.09 1.71 6.76 -51.93 -0.35 1.35 16 30 H 0.06 1.19 6.66 -51.93 -0.35 0.84 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.63 6.92 -51.93 -0.36 1.27 16 LS Contribution 292.79 15.07 4.41 4.41 Total: -1.00 -31.29 292.79 -8.99 -40.28 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.11 Total: -0.18 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -3.37 Total: 1.31 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.10 Total: -62.64 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.29 -8.99 -40.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061858723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.440 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds