Wall clock time and date at job start Mon Mar 30 2020 03:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38627 * 120.39756 * 2 1 4 4 C 1.38587 * 118.55913 * 179.97438 * 3 2 1 5 5 N 1.32293 * 119.19423 * 359.97438 * 4 3 2 6 6 C 1.32479 * 120.74171 * 0.02562 * 5 4 3 7 7 N 1.38411 * 119.21653 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99924 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47413 * 89.99946 * 8 7 6 10 10 H 1.07996 * 119.99912 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99692 * 179.97438 * 9 8 7 12 12 N 1.31506 * 120.00246 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99563 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47149 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46794 * 120.00127 * 13 11 9 16 16 H 1.48508 * 109.47042 * 239.99958 * 13 11 9 17 17 C 1.46502 * 119.99843 * 359.97438 * 7 6 5 18 18 C 1.53001 * 109.46555 * 120.00046 * 17 7 6 19 19 C 1.52999 * 109.47251 * 240.00189 * 17 7 6 20 20 N 1.32258 * 120.40243 * 179.71737 * 2 1 3 21 21 H 1.08999 * 109.47015 * 90.00471 * 1 2 3 22 22 H 1.09000 * 109.46646 * 209.99623 * 1 2 3 23 23 H 1.09000 * 109.47248 * 330.00341 * 1 2 3 24 24 H 1.08002 * 120.72588 * 359.95309 * 3 2 1 25 25 H 1.07995 * 120.39993 * 179.97438 * 4 3 2 26 26 H 1.09004 * 109.46669 * 210.00029 * 8 7 6 27 27 H 1.08999 * 109.47027 * 329.99203 * 8 7 6 28 28 H 0.96999 * 120.00334 * 179.97438 * 12 11 9 29 29 H 1.08998 * 109.47192 * 0.02562 * 17 7 6 30 30 H 1.08998 * 109.47143 * 60.00248 * 18 17 7 31 31 H 1.09001 * 109.46620 * 179.97438 * 18 17 7 32 32 H 1.08993 * 109.47346 * 300.00155 * 18 17 7 33 33 H 1.09001 * 109.47057 * 60.00145 * 19 17 7 34 34 H 1.09001 * 109.46805 * 180.02562 * 19 17 7 35 35 H 1.08998 * 109.47134 * 300.00172 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2085 1.1957 0.0000 4 6 3.5937 1.1512 0.0005 5 7 4.2016 -0.0237 0.0016 6 6 3.5015 -1.1484 0.0015 7 7 4.1700 -2.3604 0.0032 8 6 3.4128 -3.6146 0.0026 9 6 3.1553 -4.0454 -1.4184 10 1 3.5189 -3.4448 -2.2390 11 6 2.4556 -5.2062 -1.6707 12 7 2.0133 -5.9378 -0.6714 13 14 2.1358 -5.7398 -3.4321 14 1 2.7326 -4.7506 -4.3651 15 1 2.7483 -7.0725 -3.6644 16 1 0.6716 -5.8202 -3.6669 17 6 5.6347 -2.3890 0.0043 18 6 6.1295 -3.1189 1.2546 19 6 6.1315 -3.1211 -1.2439 20 7 2.1764 -1.1407 0.0056 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6869 2.1414 -0.0008 25 1 4.1698 2.0647 0.0001 26 1 3.9862 -4.3853 0.5177 27 1 2.4624 -3.4654 0.5150 28 1 1.5207 -6.7543 -0.8489 29 1 6.0180 -1.3686 0.0041 30 1 5.7461 -4.1393 1.2552 31 1 7.2193 -3.1406 1.2553 32 1 5.7755 -2.5973 2.1438 33 1 5.7790 -2.6011 -2.1346 34 1 7.2213 -3.1427 -1.2427 35 1 5.7482 -4.1415 -1.2433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061858723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:12 Heat of formation + Delta-G solvation = 34.061407 kcal Electronic energy + Delta-G solvation = -16918.683904 eV Core-core repulsion = 14337.281279 eV Total energy + Delta-G solvation = -2581.402626 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.70986 -38.62862 -35.17210 -34.71868 -33.83455 -31.46028 -29.63336 -28.53762 -27.99146 -25.29926 -23.78064 -23.52853 -20.67726 -18.67146 -18.32654 -18.17325 -16.56572 -16.26246 -16.10497 -15.48341 -15.24998 -14.72618 -14.55183 -14.11162 -13.90339 -13.69132 -13.30115 -13.20402 -13.05788 -12.89974 -12.79216 -12.54222 -12.33633 -12.12929 -11.71533 -11.58399 -11.40810 -11.33248 -10.72056 -10.58233 -9.75521 -8.62947 -8.09176 -6.26473 0.43135 0.54154 1.34981 1.36300 1.47859 2.06904 2.40745 3.13019 3.14895 3.45707 3.75108 3.92965 4.10092 4.29376 4.45380 4.51651 4.58555 4.72459 4.77376 4.81104 4.82647 4.95709 5.00054 5.04217 5.15236 5.18311 5.23734 5.43018 5.50394 5.69558 5.78192 6.11974 6.22413 6.35402 6.76396 6.89558 7.38736 7.66602 8.90928 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.009955 C = 0.007511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.238952 B = 2812.099000 C = 3726.726344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.187 3.813 3 C -0.301 4.301 4 C 0.179 3.821 5 N -0.601 5.601 6 C 0.550 3.450 7 N -0.573 5.573 8 C 0.281 3.719 9 C -0.515 4.515 10 H 0.042 0.958 11 C 0.012 3.988 12 N -0.927 5.927 13 Si 0.956 3.044 14 H -0.275 1.275 15 H -0.273 1.273 16 H -0.280 1.280 17 C 0.144 3.856 18 C -0.149 4.149 19 C -0.144 4.144 20 N -0.600 5.600 21 H 0.087 0.913 22 H 0.059 0.941 23 H 0.113 0.887 24 H 0.177 0.823 25 H 0.203 0.797 26 H 0.019 0.981 27 H 0.010 0.990 28 H 0.264 0.736 29 H 0.101 0.899 30 H 0.043 0.957 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.032 0.968 34 H 0.087 0.913 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 13.063 1.595 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.039 3.961 3 C -0.327 4.327 4 C 0.012 3.988 5 N -0.325 5.325 6 C 0.194 3.806 7 N -0.286 5.286 8 C 0.159 3.841 9 C -0.554 4.554 10 H 0.060 0.940 11 C -0.186 4.186 12 N -0.567 5.567 13 Si 0.782 3.218 14 H -0.200 1.200 15 H -0.198 1.198 16 H -0.206 1.206 17 C 0.041 3.959 18 C -0.208 4.208 19 C -0.202 4.202 20 N -0.324 5.324 21 H 0.106 0.894 22 H 0.078 0.922 23 H 0.132 0.868 24 H 0.194 0.806 25 H 0.219 0.781 26 H 0.037 0.963 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.559 11.787 1.652 12.423 hybrid contribution -0.898 -0.060 -0.856 1.242 sum 2.661 11.727 0.797 12.052 Atomic orbital electron populations 1.20813 0.86637 1.04219 1.03900 1.22166 0.98565 0.87896 0.87473 1.22568 0.96246 1.00209 1.13697 1.23574 0.92985 0.95104 0.87121 1.67910 1.41162 0.98509 1.24963 1.19591 0.85486 0.87060 0.88424 1.46866 1.05898 1.02173 1.73681 1.18670 0.90204 0.79342 0.95835 1.21564 1.34365 1.06746 0.92705 0.93991 1.25667 0.95438 0.96580 1.00965 1.70041 1.38624 1.15654 1.32402 0.85538 0.77883 0.78148 0.80234 1.19953 1.19830 1.20554 1.21128 0.77860 1.01191 0.95713 1.22075 1.02324 0.99908 0.96451 1.22035 1.01131 1.00604 0.96472 1.67931 1.08514 1.32511 1.23428 0.89446 0.92173 0.86821 0.80578 0.78065 0.96328 0.97194 0.92656 0.88106 0.93812 0.88674 0.93435 0.94849 0.89419 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.62 10.22 71.24 0.73 -1.90 16 2 C 0.19 6.57 6.82 42.59 0.29 6.86 16 3 C -0.30 -8.19 9.85 22.45 0.22 -7.97 16 4 C 0.18 5.13 11.30 84.71 0.96 6.08 16 5 N -0.60 -22.96 8.85 -197.99 -1.75 -24.71 16 6 C 0.55 25.07 8.18 261.48 2.14 27.21 16 7 N -0.57 -26.95 2.49 -691.11 -1.72 -28.67 16 8 C 0.28 15.41 4.60 85.63 0.39 15.80 16 9 C -0.51 -29.77 7.83 25.60 0.20 -29.57 16 10 H 0.04 2.50 7.63 -2.91 -0.02 2.47 16 11 C 0.01 0.69 5.46 84.66 0.46 1.15 16 12 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 13 Si 0.96 45.62 29.54 68.60 2.03 47.64 16 14 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 C 0.14 5.55 3.27 44.99 0.15 5.70 16 18 C -0.15 -5.01 9.17 71.98 0.66 -4.35 16 19 C -0.14 -5.40 8.47 71.98 0.61 -4.79 16 20 N -0.60 -27.70 9.05 -186.02 -1.68 -29.38 16 21 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.11 2.03 8.09 -2.39 -0.02 2.01 16 24 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 25 H 0.20 3.68 8.06 -2.91 -0.02 3.65 16 26 H 0.02 1.07 6.43 -2.38 -0.02 1.05 16 27 H 0.01 0.61 7.33 -2.39 -0.02 0.60 16 28 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.10 3.67 6.76 -2.39 -0.02 3.66 16 30 H 0.04 1.64 6.66 -2.39 -0.02 1.62 16 31 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.05 2.08 6.92 -2.39 -0.02 2.06 16 Total: -1.00 -71.66 292.79 5.03 -66.63 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.06 Total: 9.79 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 6.81 Total: 14.23 kcal Atomic # 7 Polarization: -133.42 SS G_CDS: -4.87 Total: -138.29 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -71.66 5.03 -66.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061858723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.691 kcal (2) G-P(sol) polarization free energy of solvation -71.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds