Wall clock time and date at job start Mon Mar 30 2020 02:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47450 * 2 1 4 4 C 1.50706 * 109.47437 * 120.00363 * 2 1 3 5 5 H 1.07993 * 120.00204 * 119.99228 * 4 2 1 6 6 C 1.37877 * 119.99384 * 299.99499 * 4 2 1 7 7 N 1.31513 * 120.00144 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99724 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.46865 * 60.00257 * 8 6 4 10 10 H 1.48502 * 109.47159 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47118 * 300.00249 * 8 6 4 12 12 N 1.46903 * 109.46711 * 239.99655 * 2 1 3 13 13 C 1.46907 * 110.99846 * 85.00558 * 12 2 1 14 14 C 1.50696 * 109.47272 * 179.97438 * 13 12 2 15 15 C 1.38258 * 120.00339 * 269.97562 * 14 13 12 16 16 C 1.38204 * 120.00055 * 179.97438 * 15 14 13 17 17 C 1.38261 * 120.00314 * 359.79443 * 16 15 14 18 18 C 1.38217 * 119.99360 * 0.48315 * 17 16 15 19 19 C 1.50699 * 119.99610 * 179.76902 * 18 17 16 20 20 O 1.42903 * 109.47152 * 269.72650 * 19 18 17 21 21 C 1.38211 * 119.99837 * 89.99686 * 14 13 12 22 22 H 1.09009 * 109.46932 * 299.99974 * 1 2 3 23 23 H 1.08995 * 109.47401 * 59.99814 * 1 2 3 24 24 H 1.08996 * 109.47191 * 180.02562 * 1 2 3 25 25 H 0.97007 * 119.99938 * 179.97438 * 7 6 4 26 26 H 1.00891 * 111.00433 * 321.04835 * 12 2 1 27 27 H 1.09002 * 109.46984 * 59.99442 * 13 12 2 28 28 H 1.08999 * 109.46732 * 299.99979 * 13 12 2 29 29 H 1.08005 * 119.99418 * 0.02562 * 15 14 13 30 30 H 1.08000 * 119.99983 * 180.02562 * 16 15 14 31 31 H 1.07994 * 120.00163 * 180.24545 * 17 16 15 32 32 H 1.08997 * 109.47198 * 149.72328 * 19 18 17 33 33 H 1.09008 * 109.47393 * 29.72044 * 19 18 17 34 34 H 0.96700 * 114.00311 * 180.02562 * 20 19 18 35 35 H 1.08001 * 120.00016 * 359.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6033 8 14 2.3215 -1.1204 4.0079 9 1 3.8064 -1.1210 4.0080 10 1 1.8262 -0.4206 5.2204 11 1 1.8259 -2.5203 4.0077 12 7 2.0195 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3470 14 6 2.5883 -0.5216 -3.5558 15 6 3.9448 -0.5731 -3.8182 16 6 4.4088 -1.2560 -4.9266 17 6 3.5168 -1.8913 -5.7706 18 6 2.1603 -1.8349 -5.5114 19 6 1.1877 -2.5229 -6.4343 20 8 0.7810 -1.6152 -7.4603 21 6 1.6962 -1.1522 -4.4024 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.7083 1.1609 3.4844 26 1 1.4494 -1.4979 -1.4100 27 1 2.7588 1.0461 -2.1182 28 1 1.0870 0.6163 -2.5525 29 1 4.6418 -0.0803 -3.1566 30 1 5.4684 -1.2966 -5.1313 31 1 3.8797 -2.4282 -6.6345 32 1 0.3145 -2.8451 -5.8671 33 1 1.6677 -3.3909 -6.8865 34 1 0.1529 -1.9913 -8.0920 35 1 0.6366 -1.1120 -4.1974 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067407244.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:45 Heat of formation + Delta-G solvation = -53.464889 kcal Electronic energy + Delta-G solvation = -15918.210716 eV Core-core repulsion = 13300.719915 eV Total energy + Delta-G solvation = -2617.490802 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48466 -38.01729 -37.30080 -34.78077 -32.83150 -32.28018 -29.75526 -27.26382 -26.87362 -25.83119 -22.93035 -22.12856 -21.48222 -18.45181 -18.33543 -17.41132 -16.79479 -16.70278 -16.12574 -15.82307 -15.23456 -14.95419 -14.48751 -14.41139 -13.88934 -13.79352 -13.46928 -13.18515 -12.97048 -12.83477 -12.73893 -12.42358 -12.16770 -12.10942 -11.81001 -11.66536 -11.07123 -10.94679 -10.48649 -9.77419 -9.65598 -8.98942 -8.09573 -6.21325 0.38271 0.47347 1.43846 1.45726 1.53607 2.44289 2.75703 3.18479 3.54627 3.75679 3.95257 3.96765 4.15513 4.22420 4.37983 4.41292 4.57556 4.64160 4.66513 4.75787 4.77614 4.87535 5.07472 5.11611 5.17215 5.37988 5.54661 5.63259 5.67711 5.75753 5.80110 6.10107 6.25334 6.61673 6.77433 6.92419 6.93425 7.48561 8.95747 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.039727 B = 0.004780 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.642504 B = 5855.782881 C = 6152.622163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H 0.003 0.997 4 C -0.517 4.517 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.679 5.679 13 C 0.101 3.899 14 C -0.088 4.088 15 C -0.109 4.109 16 C -0.124 4.124 17 C -0.108 4.108 18 C -0.107 4.107 19 C 0.120 3.880 20 O -0.589 6.589 21 C -0.108 4.108 22 H 0.063 0.937 23 H 0.024 0.976 24 H 0.032 0.968 25 H 0.261 0.739 26 H 0.331 0.669 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.122 0.878 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.399 0.601 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.655 -6.621 -17.949 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.788 3.212 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.309 5.309 13 C -0.028 4.028 14 C -0.088 4.088 15 C -0.128 4.128 16 C -0.141 4.141 17 C -0.126 4.126 18 C -0.107 4.107 19 C 0.043 3.957 20 O -0.399 6.399 21 C -0.127 4.127 22 H 0.082 0.918 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.140 0.860 30 H 0.166 0.834 31 H 0.164 0.836 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.249 0.751 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.636 -6.020 -17.317 18.522 hybrid contribution -1.222 -0.255 0.709 1.435 sum 1.415 -6.275 -16.608 17.810 Atomic orbital electron populations 1.22239 0.99912 0.99302 1.00109 1.18983 0.90152 0.92799 0.87493 0.97937 1.21401 1.30595 1.12527 0.91003 0.92772 1.25728 0.95408 0.95866 1.01901 1.70005 1.37934 1.24264 1.24098 0.85547 0.78640 0.78659 0.78360 1.19902 1.20900 1.19624 1.60743 1.57897 1.09270 1.02954 1.20815 0.98480 0.94762 0.88706 1.19878 0.94448 0.98954 0.95533 1.21243 0.94746 0.99207 0.97576 1.21413 1.01010 0.97358 0.94349 1.21330 0.92281 0.99289 0.99724 1.19909 0.95055 0.99985 0.95801 1.21007 0.95851 0.90768 0.88098 1.86520 1.67466 1.42926 1.42950 1.21034 0.99365 0.97325 0.94961 0.91817 0.95699 0.94847 0.92951 0.85243 0.91858 0.95523 0.86031 0.83432 0.83602 0.92048 0.90461 0.75058 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.68 8.94 71.98 0.64 -7.03 16 2 C 0.21 11.14 2.57 44.17 0.11 11.26 16 3 H 0.00 0.15 7.80 -2.39 -0.02 0.14 16 4 C -0.52 -29.31 8.84 25.60 0.23 -29.08 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -53.84 11.32 21.45 0.24 -53.60 16 8 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.68 -29.95 6.22 -499.44 -3.11 -33.06 16 13 C 0.10 3.86 5.61 85.55 0.48 4.34 16 14 C -0.09 -2.88 5.39 -19.87 -0.11 -2.98 16 15 C -0.11 -3.26 9.70 22.27 0.22 -3.04 16 16 C -0.12 -2.99 10.05 22.27 0.22 -2.77 16 17 C -0.11 -2.47 9.70 22.27 0.22 -2.25 16 18 C -0.11 -2.69 5.51 -19.87 -0.11 -2.80 16 19 C 0.12 2.20 7.17 71.24 0.51 2.71 16 20 O -0.59 -11.31 13.64 -148.98 -2.03 -13.34 16 21 C -0.11 -3.20 9.36 22.27 0.21 -2.99 16 22 H 0.06 3.48 6.07 -2.38 -0.01 3.46 16 23 H 0.02 1.08 7.45 -2.39 -0.02 1.06 16 24 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 25 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 26 H 0.33 13.90 8.46 -89.70 -0.76 13.14 16 27 H 0.06 2.49 8.00 -2.39 -0.02 2.47 16 28 H 0.03 1.01 7.38 -2.39 -0.02 0.99 16 29 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 30 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 32 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 33 H 0.08 1.03 8.08 -2.38 -0.02 1.01 16 34 H 0.40 3.34 9.12 -74.06 -0.68 2.67 16 35 H 0.12 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -66.00 297.12 -0.15 -66.14 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.35 Total: 21.08 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 3.07 Total: -33.69 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -2.86 Total: -86.66 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -2.03 Total: -13.34 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -66.00 -0.15 -66.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407244.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.679 kcal (2) G-P(sol) polarization free energy of solvation -65.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds