Wall clock time and date at job start Mon Mar 30 2020 02:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 13 13 C 1.46904 * 110.99949 * 274.99434 * 12 2 1 14 14 C 1.52997 * 109.47280 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47196 * 180.02562 * 14 13 12 16 16 C 1.38260 * 119.94508 * 269.72554 * 15 14 13 17 17 C 1.38149 * 120.05905 * 179.72743 * 16 15 14 18 18 C 1.38735 * 119.93643 * 0.56968 * 17 16 15 19 19 O 1.35898 * 120.04782 * 179.68667 * 18 17 16 20 20 C 1.38725 * 119.89320 * 359.70090 * 18 17 16 21 21 C 1.38146 * 119.94194 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 26 26 H 1.00896 * 111.00544 * 38.95527 * 12 2 1 27 27 H 1.09002 * 109.47300 * 300.00868 * 13 12 2 28 28 H 1.09006 * 109.46967 * 60.00497 * 13 12 2 29 29 H 1.09008 * 109.47067 * 300.00177 * 14 13 12 30 30 H 1.08997 * 109.46978 * 59.99938 * 14 13 12 31 31 H 1.08000 * 119.97177 * 359.97438 * 16 15 14 32 32 H 1.07996 * 120.03066 * 180.25159 * 17 16 15 33 33 H 0.96698 * 113.99839 * 270.01419 * 19 18 17 34 34 H 1.08002 * 120.02905 * 179.97438 * 20 18 17 35 35 H 1.08004 * 119.97097 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5961 -0.5328 3.5742 15 6 2.6600 0.4058 4.7515 16 6 3.8162 1.1214 5.0016 17 6 3.8755 1.9868 6.0768 18 6 2.7774 2.1284 6.9129 19 8 2.8354 2.9743 7.9749 20 6 1.6204 1.4051 6.6630 21 6 1.5643 0.5453 5.5832 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7083 1.1609 -3.4845 26 1 1.4495 -1.4979 1.4101 27 1 2.7589 1.0462 2.1182 28 1 1.0871 0.6164 2.5526 29 1 1.9199 -1.3567 3.8031 30 1 3.5915 -0.9263 3.3684 31 1 4.6725 1.0068 4.3535 32 1 4.7775 2.5486 6.2694 33 1 3.1537 2.5616 8.7894 34 1 0.7644 1.5134 7.3127 35 1 0.6639 -0.0184 5.3885 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068612754.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:58 Heat of formation + Delta-G solvation = -30.279742 kcal Electronic energy + Delta-G solvation = -15725.946456 eV Core-core repulsion = 13109.461037 eV Total energy + Delta-G solvation = -2616.485418 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.81012 -37.30204 -35.98063 -33.20205 -31.49201 -31.02902 -28.73016 -26.12019 -25.09357 -22.84013 -22.54534 -20.81080 -20.15215 -18.50590 -16.29864 -15.91067 -15.84858 -15.32527 -14.68369 -14.50553 -13.91523 -13.62589 -13.38872 -13.15530 -12.49043 -12.34082 -11.91219 -11.75061 -11.37802 -11.29131 -10.92686 -10.84694 -10.66428 -10.52511 -10.30618 -10.10573 -9.83036 -9.03254 -9.00498 -8.43887 -8.33605 -7.21648 -5.95891 -3.99440 1.18820 1.31369 3.36080 3.39869 3.43208 3.57598 4.11487 4.45756 4.81787 4.85953 4.92731 5.35084 5.35375 5.35715 5.53865 5.61671 5.71376 5.86900 5.97820 6.05605 6.28200 6.35102 6.36087 6.52314 6.70646 6.72905 6.79514 6.86500 7.12464 7.39730 7.52146 7.76054 7.90485 8.30054 8.56379 8.64421 9.07516 9.65785 11.11124 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.054055 B = 0.004040 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.867992 B = 6928.176144 C = 7021.104981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.685 5.685 13 C 0.067 3.933 14 C -0.080 4.080 15 C -0.076 4.076 16 C -0.100 4.100 17 C -0.143 4.143 18 C 0.089 3.911 19 O -0.501 6.501 20 C -0.144 4.144 21 C -0.103 4.103 22 H 0.089 0.911 23 H 0.027 0.973 24 H 0.004 0.996 25 H 0.260 0.740 26 H 0.324 0.676 27 H 0.064 0.936 28 H 0.019 0.981 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.386 0.614 34 H 0.125 0.875 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -0.072 18.223 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.315 5.315 13 C -0.063 4.063 14 C -0.118 4.118 15 C -0.077 4.077 16 C -0.118 4.118 17 C -0.162 4.162 18 C 0.045 3.955 19 O -0.311 6.311 20 C -0.162 4.162 21 C -0.121 4.121 22 H 0.107 0.893 23 H 0.046 0.954 24 H 0.023 0.977 25 H 0.070 0.930 26 H 0.140 0.860 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.241 0.759 34 H 0.143 0.857 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.197 0.552 17.492 17.790 hybrid contribution -0.589 -0.508 -0.269 0.823 sum 2.608 0.045 17.223 17.419 Atomic orbital electron populations 1.22427 1.00740 0.99142 1.00480 1.19171 0.89599 0.94433 0.86506 0.94926 1.21135 1.30257 1.12443 0.89640 0.91981 1.24963 0.95357 0.95216 0.99052 1.69877 1.37276 1.23217 1.23426 0.86559 0.79178 0.79577 0.82033 1.20382 1.21480 1.20285 1.60816 1.58045 1.09111 1.03506 1.21848 0.98451 0.95901 0.90102 1.20663 1.03081 0.96346 0.91725 1.20068 0.93476 0.97769 0.96388 1.21028 0.98195 0.95716 0.96844 1.21402 0.98331 0.99617 0.96813 1.18458 0.93618 0.92728 0.90699 1.84839 1.88840 1.37312 1.20116 1.21377 0.98185 0.97096 0.99584 1.20989 0.98368 0.98387 0.94322 0.89278 0.95360 0.97660 0.93026 0.85974 0.91714 0.96329 0.91374 0.90151 0.85320 0.85622 0.75919 0.85704 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.94 37.16 0.33 -3.79 16 2 C 0.21 5.38 2.57 -68.86 -0.18 5.20 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.52 16 4 C -0.50 -13.88 8.84 -34.44 -0.30 -14.19 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.02 11.32 55.43 0.63 -25.39 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.69 -14.56 6.23 -107.94 -0.67 -15.23 16 13 C 0.07 1.20 5.47 -3.82 -0.02 1.18 16 14 C -0.08 -1.14 5.60 -27.89 -0.16 -1.29 16 15 C -0.08 -1.00 5.13 -104.61 -0.54 -1.54 16 16 C -0.10 -1.24 9.69 -39.61 -0.38 -1.62 16 17 C -0.14 -1.67 9.99 -39.43 -0.39 -2.06 16 18 C 0.09 1.04 6.70 -39.22 -0.26 0.78 16 19 O -0.50 -5.13 13.50 -19.42 -0.26 -5.39 16 20 C -0.14 -1.66 9.99 -39.44 -0.39 -2.06 16 21 C -0.10 -1.25 9.69 -39.61 -0.38 -1.64 16 22 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 23 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 24 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.32 6.46 8.47 -39.29 -0.33 6.12 16 27 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 28 H 0.02 0.34 7.44 -51.93 -0.39 -0.04 16 29 H 0.07 0.89 8.08 -51.92 -0.42 0.47 16 30 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.39 1.94 9.06 45.56 0.41 2.36 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 LS Contribution 296.84 15.07 4.47 4.47 Total: -1.00 -30.72 296.84 -7.96 -38.68 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.33 Total: 5.83 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.78 Total: -19.59 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -0.05 Total: -40.62 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.26 Total: -5.39 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.72 -7.96 -38.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068612754.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.397 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds