Wall clock time and date at job start Mon Mar 30 2020 02:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 13 13 C 1.46904 * 110.99949 * 274.99434 * 12 2 1 14 14 C 1.52997 * 109.47280 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47196 * 180.02562 * 14 13 12 16 16 C 1.38260 * 119.94508 * 269.72554 * 15 14 13 17 17 C 1.38149 * 120.05905 * 179.72743 * 16 15 14 18 18 C 1.38735 * 119.93643 * 0.56968 * 17 16 15 19 19 O 1.35898 * 120.04782 * 179.68667 * 18 17 16 20 20 C 1.38725 * 119.89320 * 359.70090 * 18 17 16 21 21 C 1.38146 * 119.94194 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 26 26 H 1.00896 * 111.00544 * 38.95527 * 12 2 1 27 27 H 1.09002 * 109.47300 * 300.00868 * 13 12 2 28 28 H 1.09006 * 109.46967 * 60.00497 * 13 12 2 29 29 H 1.09008 * 109.47067 * 300.00177 * 14 13 12 30 30 H 1.08997 * 109.46978 * 59.99938 * 14 13 12 31 31 H 1.08000 * 119.97177 * 359.97438 * 16 15 14 32 32 H 1.07996 * 120.03066 * 180.25159 * 17 16 15 33 33 H 0.96698 * 113.99839 * 270.01419 * 19 18 17 34 34 H 1.08002 * 120.02905 * 179.97438 * 20 18 17 35 35 H 1.08004 * 119.97097 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5961 -0.5328 3.5742 15 6 2.6600 0.4058 4.7515 16 6 3.8162 1.1214 5.0016 17 6 3.8755 1.9868 6.0768 18 6 2.7774 2.1284 6.9129 19 8 2.8354 2.9743 7.9749 20 6 1.6204 1.4051 6.6630 21 6 1.5643 0.5453 5.5832 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7083 1.1609 -3.4845 26 1 1.4495 -1.4979 1.4101 27 1 2.7589 1.0462 2.1182 28 1 1.0871 0.6164 2.5526 29 1 1.9199 -1.3567 3.8031 30 1 3.5915 -0.9263 3.3684 31 1 4.6725 1.0068 4.3535 32 1 4.7775 2.5486 6.2694 33 1 3.1537 2.5616 8.7894 34 1 0.7644 1.5134 7.3127 35 1 0.6639 -0.0184 5.3885 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068612754.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:58 Heat of formation + Delta-G solvation = -51.241590 kcal Electronic energy + Delta-G solvation = -15726.855430 eV Core-core repulsion = 13109.461037 eV Total energy + Delta-G solvation = -2617.394392 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.70265 -38.41879 -37.49399 -34.92774 -33.05845 -31.91937 -30.28992 -27.52196 -27.18213 -23.84120 -23.73666 -22.14984 -21.87669 -19.32663 -18.35151 -16.98084 -16.89571 -16.57827 -16.28927 -15.92415 -15.20990 -15.11935 -14.55422 -14.35612 -14.04243 -13.63131 -13.49085 -13.08514 -12.90359 -12.81185 -12.67339 -12.43342 -12.23614 -12.16562 -11.85488 -11.68548 -11.34819 -11.04615 -10.47902 -9.92975 -9.39586 -8.97172 -8.08806 -6.20709 0.27532 0.41321 1.44537 1.46550 1.54302 2.45025 2.68113 3.19281 3.32262 3.60011 3.90776 4.07173 4.17528 4.25702 4.44543 4.47977 4.61683 4.65929 4.76413 4.87249 4.95487 5.01355 5.08338 5.15417 5.22985 5.37082 5.43707 5.46971 5.69201 5.73080 5.81956 5.93137 6.27220 6.64315 6.84510 6.88144 6.95592 7.49513 8.96651 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.054055 B = 0.004040 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.867992 B = 6928.176144 C = 7021.104981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H -0.003 1.003 4 C -0.517 4.517 5 H 0.057 0.943 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.687 5.687 13 C 0.072 3.928 14 C -0.065 4.065 15 C -0.095 4.095 16 C -0.108 4.108 17 C -0.151 4.151 18 C 0.090 3.910 19 O -0.510 6.510 20 C -0.151 4.151 21 C -0.107 4.107 22 H 0.061 0.939 23 H 0.035 0.965 24 H 0.023 0.977 25 H 0.261 0.739 26 H 0.334 0.666 27 H 0.047 0.953 28 H 0.015 0.985 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.409 0.591 34 H 0.143 0.857 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 -0.715 19.244 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.105 3.895 3 H 0.015 0.985 4 C -0.556 4.556 5 H 0.075 0.925 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.317 5.317 13 C -0.058 4.058 14 C -0.103 4.103 15 C -0.095 4.095 16 C -0.126 4.126 17 C -0.170 4.170 18 C 0.046 3.954 19 O -0.324 6.324 20 C -0.169 4.169 21 C -0.125 4.125 22 H 0.080 0.920 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.151 0.849 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.151 0.849 32 H 0.159 0.841 33 H 0.268 0.732 34 H 0.160 0.840 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.388 -0.106 18.552 18.859 hybrid contribution -0.635 -0.239 -0.470 0.825 sum 2.753 -0.345 18.081 18.293 Atomic orbital electron populations 1.22232 0.99955 0.99360 0.99961 1.18946 0.90118 0.92617 0.87834 0.98463 1.21453 1.30545 1.12572 0.91021 0.92461 1.25765 0.95444 0.95880 1.02037 1.70014 1.38040 1.24351 1.24063 0.85536 0.78651 0.78692 0.78266 1.19462 1.21072 1.19851 1.60667 1.57863 1.09682 1.03471 1.21834 0.98050 0.95419 0.90482 1.20469 1.03113 0.96432 0.90294 1.20016 0.94377 0.98525 0.96613 1.21178 0.98301 0.95847 0.97270 1.21601 0.99154 0.99642 0.96562 1.18598 0.93569 0.92216 0.91033 1.84775 1.89044 1.37599 1.20932 1.21601 0.98830 0.96840 0.99636 1.21170 0.98458 0.98579 0.94294 0.92044 0.94623 0.95830 0.93010 0.84889 0.93453 0.96659 0.89997 0.90152 0.84851 0.84114 0.73193 0.83967 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.62 8.94 71.98 0.64 -6.97 16 2 C 0.21 11.05 2.57 44.17 0.11 11.16 16 3 H 0.00 -0.15 7.80 -2.39 -0.02 -0.17 16 4 C -0.52 -29.15 8.84 25.60 0.23 -28.92 16 5 H 0.06 3.21 7.81 -2.91 -0.02 3.18 16 6 C 0.01 0.38 5.30 84.66 0.45 0.83 16 7 N -0.92 -54.16 11.32 21.45 0.24 -53.92 16 8 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 12 N -0.69 -29.05 6.23 -495.42 -3.09 -32.13 16 13 C 0.07 2.56 5.47 86.30 0.47 3.03 16 14 C -0.07 -1.78 5.60 29.85 0.17 -1.61 16 15 C -0.09 -2.38 5.13 -19.85 -0.10 -2.48 16 16 C -0.11 -2.57 9.69 22.25 0.22 -2.36 16 17 C -0.15 -3.30 9.99 22.37 0.22 -3.07 16 18 C 0.09 1.94 6.70 22.51 0.15 2.09 16 19 O -0.51 -9.26 13.50 -92.40 -1.25 -10.50 16 20 C -0.15 -3.19 9.99 22.36 0.22 -2.97 16 21 C -0.11 -2.44 9.69 22.25 0.22 -2.23 16 22 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 23 H 0.03 1.64 8.13 -2.39 -0.02 1.62 16 24 H 0.02 1.02 7.45 -2.39 -0.02 1.00 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.33 12.98 8.47 -89.70 -0.76 12.22 16 27 H 0.05 1.84 8.06 -2.39 -0.02 1.82 16 28 H 0.02 0.55 7.44 -2.38 -0.02 0.54 16 29 H 0.08 1.99 8.08 -2.38 -0.02 1.97 16 30 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 31 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 33 H 0.41 3.07 9.06 -74.06 -0.67 2.40 16 34 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -64.93 296.84 0.59 -64.34 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.34 Total: 19.42 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 3.00 Total: -33.50 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -2.84 Total: -86.05 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -1.25 Total: -10.50 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -64.93 0.59 -64.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068612754.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.095 kcal (2) G-P(sol) polarization free energy of solvation -64.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds