Wall clock time and date at job start Mon Mar 30 2020 03:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38883 * 120.77993 * 2 1 4 4 C 1.37969 * 119.38224 * 179.97438 * 3 2 1 5 5 N 1.32075 * 120.99996 * 0.02562 * 4 3 2 6 6 C 1.32233 * 121.69399 * 359.97438 * 5 4 3 7 7 N 1.39274 * 119.74518 * 180.02562 * 6 5 4 8 8 C 1.46900 * 111.00444 * 294.92237 * 7 6 5 9 9 C 1.46904 * 110.99755 * 58.87881 * 7 6 5 10 10 H 1.09003 * 109.46724 * 295.42407 * 9 7 6 11 11 C 1.52994 * 109.47265 * 55.42377 * 9 7 6 12 12 C 1.50700 * 109.47142 * 175.43054 * 9 7 6 13 13 H 1.08003 * 119.99816 * 359.97438 * 12 9 7 14 14 C 1.37877 * 119.99880 * 180.02562 * 12 9 7 15 15 N 1.31520 * 119.99556 * 179.97438 * 14 12 9 16 16 Si 1.86797 * 120.00314 * 359.97438 * 14 12 9 17 17 H 1.48498 * 109.46672 * 90.00215 * 16 14 12 18 18 H 1.48495 * 109.47166 * 210.00496 * 16 14 12 19 19 H 1.48500 * 109.46908 * 330.00373 * 16 14 12 20 20 C 1.38824 * 120.77690 * 179.72006 * 2 1 3 21 21 N 1.39998 * 120.51586 * 359.97438 * 20 2 1 22 22 H 1.09009 * 109.46947 * 89.99821 * 1 2 3 23 23 H 1.09004 * 109.46914 * 330.00425 * 1 2 3 24 24 H 1.08998 * 109.47573 * 209.99817 * 1 2 3 25 25 H 1.07996 * 120.30841 * 0.02562 * 3 2 1 26 26 H 1.08008 * 119.49932 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.46930 * 65.59373 * 8 7 6 28 28 H 1.08998 * 109.47063 * 185.60133 * 8 7 6 29 29 H 1.08999 * 109.46738 * 305.59762 * 8 7 6 30 30 H 1.09004 * 109.47006 * 174.90804 * 11 9 7 31 31 H 1.08992 * 109.47405 * 294.91243 * 11 9 7 32 32 H 1.09005 * 109.47208 * 54.91759 * 11 9 7 33 33 H 0.97000 * 119.99546 * 179.97438 * 15 14 12 34 34 H 0.97003 * 120.00122 * 5.91939 * 21 20 2 35 35 H 0.97003 * 120.00501 * 185.91457 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2176 1.1932 0.0000 4 6 3.5969 1.1595 0.0005 5 7 4.2493 0.0112 0.0005 6 6 3.6143 -1.1487 0.0005 7 7 4.3430 -2.3355 0.0011 8 6 5.1115 -2.4821 -1.2423 9 6 5.2221 -2.4129 1.1756 10 1 5.9708 -1.6226 1.1216 11 6 4.3898 -2.2410 2.4478 12 6 5.9086 -3.7542 1.2017 13 1 5.7112 -4.4770 0.4238 14 6 6.7877 -4.0590 2.2191 15 7 7.3864 -5.2298 2.2421 16 14 7.1285 -2.8091 3.5648 17 1 6.1630 -3.0030 4.6764 18 1 8.5117 -2.9932 4.0727 19 1 6.9815 -1.4374 3.0151 20 6 2.2173 -1.1927 0.0058 21 7 1.5448 -2.4206 0.0124 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3633 0.8901 0.5138 24 1 -0.3634 -0.8900 0.5138 25 1 1.6955 2.1386 0.0004 26 1 4.1515 2.0864 0.0001 27 1 5.8719 -1.7028 -1.2934 28 1 5.5919 -3.4604 -1.2593 29 1 4.4407 -2.3918 -2.0967 30 1 5.0258 -2.3883 3.3207 31 1 3.9662 -1.2371 2.4720 32 1 3.5844 -2.9755 2.4571 33 1 8.0052 -5.4440 2.9577 34 1 0.5789 -2.4451 -0.0738 35 1 2.0447 -3.2470 0.1030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070062982.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:59 Heat of formation + Delta-G solvation = 52.932000 kcal Electronic energy + Delta-G solvation = -17136.634799 eV Core-core repulsion = 14556.050464 eV Total energy + Delta-G solvation = -2580.584335 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21048 -36.76864 -34.95309 -32.99716 -31.82297 -30.13419 -28.56245 -27.40943 -25.30978 -24.33549 -22.06502 -21.77245 -19.37048 -17.43218 -16.74330 -16.42798 -15.55272 -15.31091 -14.65637 -14.19864 -13.93226 -13.57541 -13.22564 -12.80658 -12.58562 -12.52058 -12.30146 -12.07873 -11.68442 -11.55489 -10.91901 -10.80223 -10.58913 -10.54938 -10.13532 -9.53583 -9.28676 -8.95990 -8.87125 -8.54810 -7.64986 -7.17290 -6.05964 -4.04330 1.55753 1.82961 3.29118 3.40914 3.45391 4.18560 4.21672 4.42724 4.46233 4.97371 5.05654 5.26776 5.31183 5.34918 5.54433 5.64407 5.76898 6.01402 6.11002 6.21084 6.38792 6.42267 6.47087 6.51094 6.63342 6.80587 6.86637 6.97430 7.27916 7.57625 7.67168 7.90679 8.13195 8.18442 8.56467 8.67300 8.99118 9.56377 11.06511 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.034028 B = 0.008011 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.649274 B = 3494.150078 C = 3640.892801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.140 4.140 3 C -0.141 4.141 4 C 0.041 3.959 5 N -0.476 5.476 6 C 0.249 3.751 7 N -0.478 5.478 8 C 0.047 3.953 9 C 0.190 3.810 10 H 0.016 0.984 11 C -0.142 4.142 12 C -0.506 4.506 13 H 0.083 0.917 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.882 3.118 17 H -0.280 1.280 18 H -0.297 1.297 19 H -0.266 1.266 20 C 0.195 3.805 21 N -0.858 5.858 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.125 0.875 26 H 0.143 0.857 27 H 0.029 0.971 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.022 0.978 32 H 0.055 0.945 33 H 0.264 0.736 34 H 0.390 0.610 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.906 10.022 -4.489 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.153 4.153 3 C -0.161 4.161 4 C -0.118 4.118 5 N -0.188 5.188 6 C 0.013 3.987 7 N -0.202 5.202 8 C -0.101 4.101 9 C 0.084 3.916 10 H 0.033 0.967 11 C -0.200 4.200 12 C -0.544 4.544 13 H 0.101 0.899 14 C -0.129 4.129 15 N -0.537 5.537 16 Si 0.713 3.287 17 H -0.207 1.207 18 H -0.224 1.224 19 H -0.191 1.191 20 C 0.084 3.916 21 N -0.398 5.398 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.143 0.857 26 H 0.160 0.840 27 H 0.048 0.952 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.219 0.781 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -12.157 9.523 -4.366 16.048 hybrid contribution -0.264 0.997 0.906 1.373 sum -12.420 10.521 -3.461 16.641 Atomic orbital electron populations 1.20527 0.90892 1.02456 1.01810 1.19637 0.96004 0.91664 1.07990 1.21634 0.95238 0.97387 1.01882 1.22143 0.91440 0.95531 1.02670 1.67732 1.41704 0.98618 1.10711 1.19778 0.89289 0.88885 1.00707 1.60171 1.29164 1.25983 1.04852 1.22169 0.95953 1.02663 0.89287 1.19733 0.89355 0.97932 0.84607 0.96659 1.22130 1.00306 0.98460 0.99064 1.20944 1.23541 0.98737 1.11200 0.89875 1.24870 0.95424 0.95010 0.97633 1.69876 1.29335 1.21080 1.33436 0.86929 0.76261 0.82923 0.82619 1.20674 1.22414 1.19062 1.18275 0.91119 0.86791 0.95369 1.42460 1.08777 1.05844 1.82753 0.91603 0.91503 0.91968 0.85734 0.83987 0.95217 0.89711 0.93830 0.93678 0.95861 0.92581 0.92627 0.78149 0.75503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 9.61 36.00 0.35 -0.64 16 2 C -0.14 -1.96 5.93 -104.17 -0.62 -2.57 16 3 C -0.14 -1.93 9.81 -39.44 -0.39 -2.31 16 4 C 0.04 0.65 11.17 -17.55 -0.20 0.46 16 5 N -0.48 -9.44 9.71 -12.23 -0.12 -9.56 16 6 C 0.25 4.90 3.82 -154.66 -0.59 4.31 16 7 N -0.48 -10.25 3.81 -174.51 -0.66 -10.92 16 8 C 0.05 0.95 9.12 60.06 0.55 1.50 16 9 C 0.19 4.71 1.46 -68.87 -0.10 4.61 16 10 H 0.02 0.43 7.01 -51.93 -0.36 0.06 16 11 C -0.14 -3.34 8.36 37.15 0.31 -3.03 16 12 C -0.51 -14.18 8.54 -34.44 -0.29 -14.47 16 13 H 0.08 2.48 6.96 -52.48 -0.37 2.11 16 14 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 15 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 16 Si 0.88 22.60 24.41 -169.99 -4.15 18.45 16 17 H -0.28 -6.98 6.83 56.52 0.39 -6.59 16 18 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 19 H -0.27 -6.78 6.53 56.52 0.37 -6.41 16 20 C 0.19 3.21 6.79 -83.34 -0.57 2.64 16 21 N -0.86 -11.94 8.96 32.63 0.29 -11.65 16 22 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 23 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 24 H 0.06 0.57 6.73 -51.93 -0.35 0.22 16 25 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.14 1.90 8.06 -52.48 -0.42 1.47 16 27 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 28 H 0.08 1.81 6.56 -51.93 -0.34 1.47 16 29 H 0.04 0.78 8.11 -51.93 -0.42 0.36 16 30 H 0.04 1.10 3.21 -51.93 -0.17 0.93 16 31 H 0.02 0.51 7.30 -51.93 -0.38 0.13 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.39 4.15 7.04 -40.82 -0.29 3.86 16 35 H 0.41 6.30 8.16 -40.82 -0.33 5.97 16 LS Contribution 279.35 15.07 4.21 4.21 Total: -1.00 -31.68 279.35 -6.02 -37.71 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.72 Total: 5.90 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.65 Total: -7.51 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.28 Total: -58.75 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.15 Total: 18.45 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.68 -6.02 -37.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070062982.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.640 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds