Wall clock time and date at job start Mon Mar 30 2020 03:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38883 * 120.77993 * 2 1 4 4 C 1.37969 * 119.38224 * 179.97438 * 3 2 1 5 5 N 1.32075 * 120.99996 * 0.02562 * 4 3 2 6 6 C 1.32233 * 121.69399 * 359.97438 * 5 4 3 7 7 N 1.39274 * 119.74518 * 180.02562 * 6 5 4 8 8 C 1.46900 * 111.00444 * 294.92237 * 7 6 5 9 9 C 1.46904 * 110.99755 * 58.87881 * 7 6 5 10 10 H 1.09003 * 109.46724 * 295.42407 * 9 7 6 11 11 C 1.52994 * 109.47265 * 55.42377 * 9 7 6 12 12 C 1.50700 * 109.47142 * 175.43054 * 9 7 6 13 13 H 1.08003 * 119.99816 * 359.97438 * 12 9 7 14 14 C 1.37877 * 119.99880 * 180.02562 * 12 9 7 15 15 N 1.31520 * 119.99556 * 179.97438 * 14 12 9 16 16 Si 1.86797 * 120.00314 * 359.97438 * 14 12 9 17 17 H 1.48498 * 109.46672 * 90.00215 * 16 14 12 18 18 H 1.48495 * 109.47166 * 210.00496 * 16 14 12 19 19 H 1.48500 * 109.46908 * 330.00373 * 16 14 12 20 20 C 1.38824 * 120.77690 * 179.72006 * 2 1 3 21 21 N 1.39998 * 120.51586 * 359.97438 * 20 2 1 22 22 H 1.09009 * 109.46947 * 89.99821 * 1 2 3 23 23 H 1.09004 * 109.46914 * 330.00425 * 1 2 3 24 24 H 1.08998 * 109.47573 * 209.99817 * 1 2 3 25 25 H 1.07996 * 120.30841 * 0.02562 * 3 2 1 26 26 H 1.08008 * 119.49932 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.46930 * 65.59373 * 8 7 6 28 28 H 1.08998 * 109.47063 * 185.60133 * 8 7 6 29 29 H 1.08999 * 109.46738 * 305.59762 * 8 7 6 30 30 H 1.09004 * 109.47006 * 174.90804 * 11 9 7 31 31 H 1.08992 * 109.47405 * 294.91243 * 11 9 7 32 32 H 1.09005 * 109.47208 * 54.91759 * 11 9 7 33 33 H 0.97000 * 119.99546 * 179.97438 * 15 14 12 34 34 H 0.97003 * 120.00122 * 5.91939 * 21 20 2 35 35 H 0.97003 * 120.00501 * 185.91457 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2176 1.1932 0.0000 4 6 3.5969 1.1595 0.0005 5 7 4.2493 0.0112 0.0005 6 6 3.6143 -1.1487 0.0005 7 7 4.3430 -2.3355 0.0011 8 6 5.1115 -2.4821 -1.2423 9 6 5.2221 -2.4129 1.1756 10 1 5.9708 -1.6226 1.1216 11 6 4.3898 -2.2410 2.4478 12 6 5.9086 -3.7542 1.2017 13 1 5.7112 -4.4770 0.4238 14 6 6.7877 -4.0590 2.2191 15 7 7.3864 -5.2298 2.2421 16 14 7.1285 -2.8091 3.5648 17 1 6.1630 -3.0030 4.6764 18 1 8.5117 -2.9932 4.0727 19 1 6.9815 -1.4374 3.0151 20 6 2.2173 -1.1927 0.0058 21 7 1.5448 -2.4206 0.0124 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3633 0.8901 0.5138 24 1 -0.3634 -0.8900 0.5138 25 1 1.6955 2.1386 0.0004 26 1 4.1515 2.0864 0.0001 27 1 5.8719 -1.7028 -1.2934 28 1 5.5919 -3.4604 -1.2593 29 1 4.4407 -2.3918 -2.0967 30 1 5.0258 -2.3883 3.3207 31 1 3.9662 -1.2371 2.4720 32 1 3.5844 -2.9755 2.4571 33 1 8.0052 -5.4440 2.9577 34 1 0.5789 -2.4451 -0.0738 35 1 2.0447 -3.2470 0.1030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070062982.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:58 Heat of formation + Delta-G solvation = 29.444431 kcal Electronic energy + Delta-G solvation = -17137.653297 eV Core-core repulsion = 14556.050464 eV Total energy + Delta-G solvation = -2581.602833 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.50161 -38.36615 -36.12793 -34.91409 -33.23016 -31.99447 -29.80149 -28.48124 -27.21736 -26.05821 -23.52447 -23.09764 -20.98223 -19.04022 -18.30222 -17.69952 -17.24723 -17.00586 -15.88566 -15.84585 -15.22087 -15.13029 -14.83296 -14.37878 -14.09198 -13.79523 -13.76249 -13.40901 -13.18381 -12.88626 -12.73837 -12.42441 -12.33636 -12.11718 -11.96703 -11.52915 -11.26955 -10.76427 -10.39711 -10.01940 -9.35514 -8.36642 -8.30507 -6.32755 0.34930 0.65030 1.23995 1.31942 1.41699 2.28506 2.95094 2.99307 3.05288 3.07974 3.90418 4.00860 4.14117 4.26384 4.47369 4.54717 4.58431 4.63540 4.67543 4.75813 4.84785 4.88021 4.94299 5.08460 5.11852 5.23185 5.33336 5.43911 5.57282 5.77705 6.00309 6.25359 6.49690 6.71789 6.85366 7.08146 7.29638 7.33979 8.84781 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.034028 B = 0.008011 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.649274 B = 3494.150078 C = 3640.892801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.134 4.134 3 C -0.125 4.125 4 C 0.025 3.975 5 N -0.515 5.515 6 C 0.203 3.797 7 N -0.475 5.475 8 C 0.054 3.946 9 C 0.200 3.800 10 H -0.012 1.012 11 C -0.129 4.129 12 C -0.504 4.504 13 H 0.053 0.947 14 C 0.022 3.978 15 N -0.940 5.940 16 Si 0.939 3.061 17 H -0.264 1.264 18 H -0.293 1.293 19 H -0.266 1.266 20 C 0.188 3.812 21 N -0.850 5.850 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.167 0.833 26 H 0.163 0.837 27 H 0.014 0.986 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.267 0.733 34 H 0.407 0.593 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.599 12.343 -4.094 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.148 4.148 3 C -0.145 4.145 4 C -0.135 4.135 5 N -0.227 5.227 6 C -0.031 4.031 7 N -0.198 5.198 8 C -0.093 4.093 9 C 0.092 3.908 10 H 0.006 0.994 11 C -0.187 4.187 12 C -0.542 4.542 13 H 0.071 0.929 14 C -0.176 4.176 15 N -0.581 5.581 16 Si 0.767 3.233 17 H -0.190 1.190 18 H -0.220 1.220 19 H -0.191 1.191 20 C 0.077 3.923 21 N -0.391 5.391 22 H 0.101 0.899 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.184 0.816 26 H 0.180 0.820 27 H 0.033 0.967 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.238 0.762 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -14.898 11.833 -3.981 19.438 hybrid contribution 0.471 0.362 0.659 0.887 sum -14.428 12.195 -3.322 19.181 Atomic orbital electron populations 1.20640 0.87590 1.03939 1.03336 1.20179 0.98260 0.90646 1.05672 1.22083 0.94371 0.99090 0.98984 1.22622 0.93023 0.95080 1.02727 1.67573 1.43413 0.99730 1.11981 1.19700 0.90229 0.88092 1.05078 1.60021 1.27930 1.28241 1.03564 1.22062 0.96120 1.00798 0.90345 1.19413 0.89556 0.94674 0.87122 0.99444 1.21944 0.99901 0.99251 0.97590 1.21146 1.23492 0.99577 1.09999 0.92906 1.25582 0.95428 0.96614 0.99969 1.69996 1.30495 1.22967 1.34617 0.86006 0.76487 0.80475 0.80348 1.19011 1.22050 1.19119 1.18390 0.90149 0.88446 0.95319 1.42417 1.09605 1.04867 1.82173 0.89881 0.89428 0.91181 0.81600 0.81995 0.96713 0.91748 0.91438 0.94597 0.94757 0.92016 0.92413 0.76194 0.76375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.61 71.23 0.68 -0.77 16 2 C -0.13 -3.23 5.93 -19.57 -0.12 -3.35 16 3 C -0.13 -2.90 9.81 22.36 0.22 -2.68 16 4 C 0.02 0.74 11.17 84.59 0.94 1.69 16 5 N -0.51 -20.07 9.71 -192.62 -1.87 -21.94 16 6 C 0.20 7.85 3.82 133.17 0.51 8.36 16 7 N -0.47 -20.67 3.81 -706.04 -2.69 -23.36 16 8 C 0.05 2.30 9.12 127.69 1.16 3.46 16 9 C 0.20 10.07 1.46 44.17 0.06 10.13 16 10 H -0.01 -0.67 7.01 -2.39 -0.02 -0.69 16 11 C -0.13 -6.00 8.36 71.98 0.60 -5.40 16 12 C -0.50 -29.18 8.54 25.60 0.22 -28.96 16 13 H 0.05 3.31 6.96 -2.91 -0.02 3.29 16 14 C 0.02 1.31 5.45 84.65 0.46 1.77 16 15 N -0.94 -58.84 13.96 21.45 0.30 -58.54 16 16 Si 0.94 47.10 24.41 68.60 1.67 48.78 16 17 H -0.26 -12.51 6.83 99.48 0.68 -11.83 16 18 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 19 H -0.27 -13.29 6.53 99.48 0.65 -12.64 16 20 C 0.19 5.79 6.79 38.35 0.26 6.05 16 21 N -0.85 -22.00 8.96 -50.69 -0.45 -22.46 16 22 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 23 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 24 H 0.07 0.95 6.73 -2.39 -0.02 0.94 16 25 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 26 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 27 H 0.01 0.63 8.08 -2.39 -0.02 0.62 16 28 H 0.06 2.91 6.56 -2.39 -0.02 2.89 16 29 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 30 H 0.04 1.71 3.21 -2.38 -0.01 1.70 16 31 H 0.03 1.49 7.30 -2.39 -0.02 1.47 16 32 H 0.06 2.74 8.14 -2.38 -0.02 2.72 16 33 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 34 H 0.41 7.49 7.04 -92.71 -0.65 6.84 16 35 H 0.41 12.02 8.16 -92.71 -0.76 11.26 16 Total: -1.00 -70.34 279.35 1.59 -68.75 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -0.38 Total: 18.48 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.01 Total: -9.71 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -4.72 Total: -126.30 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.67 Total: 48.78 kcal Total: -70.34 1.59 -68.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070062982.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.192 kcal (2) G-P(sol) polarization free energy of solvation -70.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds