Wall clock time and date at job start Mon Mar 30 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00055 * 2 1 4 4 C 1.46894 * 111.00199 * 123.95243 * 2 1 3 5 5 C 1.53004 * 109.46982 * 66.04836 * 4 2 1 6 6 O 1.42899 * 109.46792 * 65.00015 * 5 4 2 7 7 C 1.35911 * 116.99673 * 180.02562 * 6 5 4 8 8 C 1.39159 * 119.92787 * 359.72981 * 7 6 5 9 9 C 1.38526 * 120.43657 * 179.72438 * 8 7 6 10 10 C 1.37672 * 120.30530 * 0.54831 * 9 8 7 11 11 C 1.40730 * 119.85711 * 359.72578 * 10 9 8 12 12 C 1.41401 * 120.21720 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00344 * 24.39637 * 12 11 10 14 14 C 1.39932 * 119.99698 * 204.39740 * 12 11 10 15 15 N 1.30833 * 120.00353 * 17.88310 * 14 12 11 16 16 Si 1.86803 * 119.99856 * 197.88147 * 14 12 11 17 17 H 1.48498 * 109.47182 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47476 * 120.00107 * 16 14 12 19 19 H 1.48505 * 109.47019 * 240.00287 * 16 14 12 20 20 C 1.38092 * 119.92984 * 179.97438 * 7 6 5 21 21 H 1.08999 * 109.47454 * 296.04938 * 1 2 3 22 22 H 1.09003 * 109.47196 * 56.04316 * 1 2 3 23 23 H 1.08998 * 109.47281 * 176.04144 * 1 2 3 24 24 H 1.08994 * 109.47240 * 183.95311 * 3 2 1 25 25 H 1.09000 * 109.47291 * 303.95658 * 3 2 1 26 26 H 1.09008 * 109.46942 * 63.95306 * 3 2 1 27 27 H 1.08996 * 109.47413 * 306.05109 * 4 2 1 28 28 H 1.08997 * 109.47756 * 186.04613 * 4 2 1 29 29 H 1.09000 * 109.47082 * 305.00383 * 5 4 2 30 30 H 1.08997 * 109.47117 * 184.99978 * 5 4 2 31 31 H 1.07993 * 119.78228 * 359.97422 * 8 7 6 32 32 H 1.08001 * 119.84490 * 180.27715 * 9 8 7 33 33 H 1.07999 * 120.07237 * 179.75234 * 10 9 8 34 34 H 0.97000 * 119.99549 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.15623 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 1.6315 -2.2426 0.9703 6 8 2.2957 -2.7694 -0.1801 7 6 2.0775 -4.0786 -0.4728 8 6 1.2428 -4.8416 0.3381 9 6 1.0085 -6.1754 0.0462 10 6 1.6088 -6.7637 -1.0441 11 6 2.4598 -6.0054 -1.8695 12 6 3.0798 -6.6018 -2.9917 13 1 2.6363 -7.4704 -3.4555 14 6 4.2680 -6.0665 -3.5012 15 7 4.9899 -5.2595 -2.7667 16 14 4.8237 -6.5042 -5.2301 17 1 3.8390 -7.4284 -5.8475 18 1 4.9221 -5.2676 -6.0464 19 1 6.1523 -7.1650 -5.1706 20 6 2.6886 -4.6500 -1.5715 21 1 -0.3634 0.4513 0.9232 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0709 24 1 3.0827 1.3433 -0.0708 25 1 1.5898 1.9164 -0.8524 26 1 1.7043 1.8724 0.9234 27 1 1.5611 -0.3873 2.0627 28 1 3.0797 -0.6611 1.1756 29 1 0.5532 -2.3389 0.8431 30 1 1.9439 -2.7963 1.8556 31 1 0.7713 -4.3899 1.1983 32 1 0.3555 -6.7575 0.6795 33 1 1.4267 -7.8049 -1.2659 34 1 5.8134 -4.8883 -3.1201 35 1 3.3393 -4.0590 -2.1989 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083593202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:29 Heat of formation + Delta-G solvation = -35.199771 kcal Electronic energy + Delta-G solvation = -16270.960384 eV Core-core repulsion = 13654.261617 eV Total energy + Delta-G solvation = -2616.698767 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53702 -38.67702 -37.53569 -35.35534 -31.66755 -31.48741 -29.70346 -28.49648 -27.27806 -25.25885 -23.01464 -22.59448 -21.50404 -19.51572 -17.99184 -17.25159 -16.92138 -16.48512 -16.24368 -15.93637 -15.44813 -15.34081 -14.85291 -14.34234 -13.77729 -13.50548 -13.32878 -13.24349 -13.06163 -12.77110 -12.68585 -12.64704 -12.37027 -12.25065 -11.89927 -11.67025 -11.51605 -11.23100 -10.95902 -9.37964 -9.22976 -8.80023 -8.55009 -6.38808 0.97235 1.16973 1.38901 1.52775 1.55551 2.21742 2.62028 2.74659 3.02574 3.73640 3.97001 4.10027 4.24023 4.36539 4.44712 4.47695 4.49096 4.61758 4.65057 4.72142 4.84204 4.90137 5.00512 5.02454 5.13422 5.17291 5.34616 5.56786 5.94568 5.96469 6.06963 6.11733 6.13280 6.21928 6.51166 6.91100 6.96848 7.11964 8.33604 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.025829 B = 0.006370 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.778901 B = 4394.827747 C = 5159.577337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.573 5.573 3 C 0.028 3.972 4 C 0.063 3.937 5 C 0.060 3.940 6 O -0.328 6.328 7 C 0.132 3.868 8 C -0.321 4.321 9 C -0.062 4.062 10 C -0.271 4.271 11 C 0.106 3.894 12 C -0.498 4.498 13 H 0.082 0.918 14 C 0.033 3.967 15 N -0.820 5.820 16 Si 0.985 3.015 17 H -0.254 1.254 18 H -0.266 1.266 19 H -0.263 1.263 20 C -0.232 4.232 21 H 0.043 0.957 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.288 0.712 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.117 9.456 5.561 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.298 5.298 3 C -0.119 4.119 4 C -0.065 4.065 5 C -0.015 4.015 6 O -0.243 6.243 7 C 0.088 3.912 8 C -0.340 4.340 9 C -0.080 4.080 10 C -0.290 4.290 11 C 0.104 3.896 12 C -0.527 4.527 13 H 0.100 0.900 14 C -0.183 4.183 15 N -0.445 5.445 16 Si 0.805 3.195 17 H -0.178 1.178 18 H -0.191 1.191 19 H -0.188 1.188 20 C -0.252 4.252 21 H 0.061 0.939 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.621 9.507 5.057 11.718 hybrid contribution 0.068 0.064 0.193 0.214 sum -4.553 9.571 5.251 11.827 Atomic orbital electron populations 1.22429 0.86632 1.01966 1.01399 1.61820 1.08960 1.15051 1.43923 1.22379 1.00705 0.87532 1.01303 1.22168 1.01286 0.90498 0.92531 1.22925 0.96927 0.94468 0.87205 1.86081 1.68167 1.23055 1.46971 1.19048 0.94934 0.82594 0.94656 1.20774 1.11249 0.96524 1.05503 1.20730 0.97242 0.94158 0.95889 1.21159 1.08746 0.99057 1.00072 1.17732 0.89799 0.90532 0.91571 1.19889 1.07149 1.13330 1.12287 0.90030 1.26873 0.95491 0.92981 1.02938 1.69936 1.11785 1.24941 1.37867 0.85123 0.78778 0.79235 0.76333 1.17760 1.19102 1.18751 1.20484 1.08626 0.95583 1.00514 0.93885 0.90769 0.92586 0.91718 0.90785 0.94170 0.90161 0.90349 0.92116 0.91589 0.85771 0.85374 0.87990 0.90177 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.33 127.69 1.19 1.74 16 2 N -0.57 -15.81 4.97 -948.87 -4.71 -20.53 16 3 C 0.03 0.60 9.57 127.69 1.22 1.82 16 4 C 0.06 1.66 5.34 86.31 0.46 2.13 16 5 C 0.06 1.99 4.79 71.98 0.34 2.33 16 6 O -0.33 -15.07 10.08 -92.55 -0.93 -16.00 16 7 C 0.13 6.77 6.67 22.46 0.15 6.92 16 8 C -0.32 -14.53 9.05 22.56 0.20 -14.32 16 9 C -0.06 -2.81 10.02 22.20 0.22 -2.58 16 10 C -0.27 -13.90 9.79 22.74 0.22 -13.67 16 11 C 0.11 6.11 5.57 -21.30 -0.12 5.99 16 12 C -0.50 -28.10 9.05 23.46 0.21 -27.89 16 13 H 0.08 4.38 7.91 -2.91 -0.02 4.36 16 14 C 0.03 1.73 5.14 85.25 0.44 2.17 16 15 N -0.82 -45.61 10.96 21.82 0.24 -45.37 16 16 Si 0.99 39.71 29.60 68.60 2.03 41.74 16 17 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 18 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 20 C -0.23 -13.44 8.63 22.82 0.20 -13.24 16 21 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 22 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 23 H 0.06 1.47 6.37 -2.39 -0.02 1.46 16 24 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 25 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 26 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 28 H 0.08 2.15 8.06 -2.39 -0.02 2.13 16 29 H 0.06 1.90 5.86 -2.39 -0.01 1.89 16 30 H 0.07 2.02 7.64 -2.39 -0.02 2.00 16 31 H 0.12 4.70 6.27 -2.91 -0.02 4.68 16 32 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 33 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 34 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 35 H 0.10 6.08 6.16 -2.91 -0.02 6.06 16 Total: -1.00 -66.28 291.32 2.43 -63.85 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 1.06 Total: 24.94 kcal Atomic # 6 Polarization: -53.37 SS G_CDS: 4.75 Total: -48.62 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -4.47 Total: -65.90 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.93 Total: -16.00 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -66.28 2.43 -63.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083593202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.648 kcal (2) G-P(sol) polarization free energy of solvation -66.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds