Wall clock time and date at job start Mon Mar 30 2020 03:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38009 * 120.30937 * 2 1 4 4 N 1.32039 * 120.99462 * 179.97438 * 3 2 1 5 5 C 1.32251 * 121.69840 * 0.02562 * 4 3 2 6 6 N 1.39294 * 119.74636 * 180.02562 * 5 4 3 7 7 C 1.46899 * 110.99801 * 341.25498 * 6 5 4 8 8 C 1.46894 * 111.00074 * 105.21156 * 6 5 4 9 9 H 1.09000 * 109.47318 * 55.00118 * 8 6 5 10 10 C 1.53004 * 109.47009 * 294.99666 * 8 6 5 11 11 C 1.50699 * 109.47103 * 175.00116 * 8 6 5 12 12 H 1.08005 * 120.00197 * 359.97438 * 11 8 6 13 13 C 1.37878 * 120.00291 * 179.97438 * 11 8 6 14 14 N 1.31515 * 119.99986 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 120.00210 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47199 * 59.99983 * 15 13 11 17 17 H 1.48496 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00232 * 15 13 11 19 19 C 1.39719 * 120.51375 * 359.97438 * 5 4 3 20 20 N 1.40012 * 120.51610 * 180.02562 * 19 5 4 21 21 C 1.38839 * 120.30982 * 180.31592 * 2 1 3 22 22 H 1.09000 * 109.46732 * 89.99932 * 1 2 3 23 23 H 1.08999 * 109.46917 * 209.99886 * 1 2 3 24 24 H 1.08993 * 109.46864 * 330.00161 * 1 2 3 25 25 H 1.08001 * 119.50229 * 0.02562 * 3 2 1 26 26 H 1.08999 * 109.47288 * 53.63189 * 7 6 5 27 27 H 1.08998 * 109.46791 * 173.63607 * 7 6 5 28 28 H 1.08999 * 109.46972 * 293.63780 * 7 6 5 29 29 H 1.08992 * 109.47178 * 300.00245 * 10 8 6 30 30 H 1.08997 * 109.46686 * 60.00449 * 10 8 6 31 31 H 1.08998 * 109.46862 * 180.02562 * 10 8 6 32 32 H 0.96997 * 120.00337 * 179.97438 * 14 13 11 33 33 H 0.96998 * 119.99582 * 352.95579 * 20 19 5 34 34 H 0.96992 * 119.99800 * 172.68970 * 20 19 5 35 35 H 1.08005 * 120.77947 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2035 1.1915 0.0000 4 7 3.5238 1.2072 0.0005 5 6 4.2321 0.0904 0.0005 6 7 5.6236 0.1545 0.0016 7 6 6.0900 1.4762 -0.4381 8 6 6.1650 -0.1813 1.3252 9 1 5.7892 -1.1565 1.6348 10 6 5.7287 0.8787 2.3386 11 6 7.6699 -0.2215 1.2569 12 1 8.1738 -0.0183 0.3234 13 6 8.4037 -0.5177 2.3860 14 7 7.7903 -0.7646 3.5228 15 14 10.2690 -0.5682 2.3011 16 1 10.7815 0.7600 1.8785 17 1 10.8165 -0.9063 3.6395 18 1 10.6922 -1.5976 1.3181 19 6 3.5956 -1.1534 0.0005 20 7 4.3454 -2.3358 0.0011 21 6 2.2077 -1.1986 -0.0066 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.6604 2.1250 0.0004 26 1 5.6148 2.2489 0.1663 27 1 7.1719 1.5372 -0.3208 28 1 5.8293 1.6233 -1.4862 29 1 6.1045 1.8538 2.0291 30 1 4.6402 0.9077 2.3880 31 1 6.1308 0.6297 3.3206 32 1 8.3064 -0.9733 4.3171 33 1 5.3092 -2.2988 -0.1015 34 1 3.9015 -3.1915 0.1080 35 1 1.6856 -2.1440 -0.0114 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085425868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:59 Heat of formation + Delta-G solvation = 44.927019 kcal Electronic energy + Delta-G solvation = -17034.244266 eV Core-core repulsion = 14453.312809 eV Total energy + Delta-G solvation = -2580.931457 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.05490 -36.79874 -34.48848 -33.23378 -31.98415 -28.91881 -28.52037 -26.67307 -25.20099 -24.72602 -22.26613 -21.27379 -19.66956 -17.00066 -16.31890 -16.04988 -15.75333 -14.99176 -14.55500 -14.12643 -13.64840 -13.40409 -12.95473 -12.70952 -12.45713 -12.30867 -11.97900 -11.59055 -11.26964 -11.13708 -10.85829 -10.77823 -10.69156 -10.56266 -10.05793 -10.03525 -9.14561 -8.81157 -8.78306 -8.44944 -7.77979 -6.65265 -6.06709 -4.12363 1.77072 2.02043 3.29582 3.34256 3.36810 4.28287 4.37217 4.43212 4.76918 5.16847 5.25163 5.28010 5.38971 5.53371 5.72372 5.82021 6.05623 6.13549 6.27162 6.39787 6.61341 6.73133 6.75013 6.93181 6.95437 7.06270 7.13145 7.52337 7.64918 7.74209 7.88667 8.01266 8.25714 8.32880 8.58084 8.77316 8.93051 9.52703 10.99759 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042229 B = 0.006935 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.892415 B = 4036.589564 C = 4187.766801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.129 4.129 3 C 0.048 3.952 4 N -0.482 5.482 5 C 0.261 3.739 6 N -0.480 5.480 7 C 0.043 3.957 8 C 0.215 3.785 9 H 0.047 0.953 10 C -0.163 4.163 11 C -0.508 4.508 12 H 0.065 0.935 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.177 3.823 20 N -0.862 5.862 21 C -0.161 4.161 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.140 0.860 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.008 0.992 31 H 0.087 0.913 32 H 0.262 0.738 33 H 0.413 0.587 34 H 0.390 0.610 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.208 -0.828 -5.648 11.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.132 4.132 3 C -0.110 4.110 4 N -0.195 5.195 5 C 0.023 3.977 6 N -0.200 5.200 7 C -0.105 4.105 8 C 0.110 3.890 9 H 0.065 0.935 10 C -0.223 4.223 11 C -0.547 4.547 12 H 0.083 0.917 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.727 3.273 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.202 1.202 19 C 0.067 3.933 20 N -0.402 5.402 21 C -0.192 4.192 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.157 0.843 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.027 0.973 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.245 0.755 34 H 0.217 0.783 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.490 -0.389 -5.780 11.118 hybrid contribution 0.434 -0.598 0.614 0.960 sum -9.056 -0.987 -5.167 10.473 Atomic orbital electron populations 1.20589 0.91249 1.02248 1.01651 1.20385 0.96405 0.93564 1.02863 1.21984 0.89439 0.96678 1.02940 1.67629 1.08231 1.30319 1.13273 1.19800 0.91350 0.87160 0.99412 1.60040 1.01003 1.29269 1.29661 1.22070 1.00963 0.89234 0.98193 1.19464 0.94613 0.94907 0.79967 0.93546 1.22323 0.96208 0.99271 1.04451 1.21053 0.89974 1.47823 0.95827 0.91703 1.24917 0.98741 0.95137 0.95247 1.69889 1.35445 1.47474 1.00161 0.86537 0.85114 0.78582 0.77030 1.20249 1.21382 1.20200 1.18310 0.90878 0.87483 0.96644 1.42472 1.10666 1.04256 1.82829 1.20649 0.91501 0.98148 1.08949 0.91756 0.92082 0.91792 0.84254 0.93960 0.90585 0.93924 0.94835 0.97256 0.89464 0.92820 0.75493 0.78294 0.85861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.03 36.01 0.36 -0.72 16 2 C -0.13 -1.94 5.90 -104.48 -0.62 -2.56 16 3 C 0.05 0.81 10.84 -17.55 -0.19 0.62 16 4 N -0.48 -9.76 8.48 -12.24 -0.10 -9.86 16 5 C 0.26 5.47 4.89 -154.64 -0.76 4.71 16 6 N -0.48 -10.73 4.11 -174.52 -0.72 -11.45 16 7 C 0.04 0.92 8.19 60.06 0.49 1.41 16 8 C 0.21 5.36 1.90 -68.87 -0.13 5.23 16 9 H 0.05 1.24 6.67 -51.93 -0.35 0.89 16 10 C -0.16 -4.16 8.34 37.16 0.31 -3.85 16 11 C -0.51 -13.50 7.79 -34.44 -0.27 -13.76 16 12 H 0.06 1.71 6.82 -52.48 -0.36 1.35 16 13 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 14 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 15 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C 0.18 3.28 6.56 -83.34 -0.55 2.73 16 20 N -0.86 -14.30 8.38 32.63 0.27 -14.03 16 21 C -0.16 -2.56 9.72 -39.13 -0.38 -2.94 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 24 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 25 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 26 H 0.04 0.92 6.13 -51.93 -0.32 0.60 16 27 H 0.08 1.66 6.27 -51.93 -0.33 1.33 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.83 6.62 -51.93 -0.34 0.49 16 30 H 0.01 0.21 7.21 -51.93 -0.37 -0.16 16 31 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.41 7.55 7.35 -40.82 -0.30 7.25 16 34 H 0.39 5.15 8.87 -40.82 -0.36 4.79 16 35 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 281.51 15.07 4.24 4.24 Total: -1.00 -29.02 281.51 -7.23 -36.25 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.71 Total: 10.86 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -1.82 Total: -7.57 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.08 Total: -59.63 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.02 -7.23 -36.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085425868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.176 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds