Wall clock time and date at job start Mon Mar 30 2020 03:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38009 * 120.30937 * 2 1 4 4 N 1.32039 * 120.99462 * 179.97438 * 3 2 1 5 5 C 1.32251 * 121.69840 * 0.02562 * 4 3 2 6 6 N 1.39294 * 119.74636 * 180.02562 * 5 4 3 7 7 C 1.46899 * 110.99801 * 341.25498 * 6 5 4 8 8 C 1.46894 * 111.00074 * 105.21156 * 6 5 4 9 9 H 1.09000 * 109.47318 * 55.00118 * 8 6 5 10 10 C 1.53004 * 109.47009 * 294.99666 * 8 6 5 11 11 C 1.50699 * 109.47103 * 175.00116 * 8 6 5 12 12 H 1.08005 * 120.00197 * 359.97438 * 11 8 6 13 13 C 1.37878 * 120.00291 * 179.97438 * 11 8 6 14 14 N 1.31515 * 119.99986 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 120.00210 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47199 * 59.99983 * 15 13 11 17 17 H 1.48496 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00232 * 15 13 11 19 19 C 1.39719 * 120.51375 * 359.97438 * 5 4 3 20 20 N 1.40012 * 120.51610 * 180.02562 * 19 5 4 21 21 C 1.38839 * 120.30982 * 180.31592 * 2 1 3 22 22 H 1.09000 * 109.46732 * 89.99932 * 1 2 3 23 23 H 1.08999 * 109.46917 * 209.99886 * 1 2 3 24 24 H 1.08993 * 109.46864 * 330.00161 * 1 2 3 25 25 H 1.08001 * 119.50229 * 0.02562 * 3 2 1 26 26 H 1.08999 * 109.47288 * 53.63189 * 7 6 5 27 27 H 1.08998 * 109.46791 * 173.63607 * 7 6 5 28 28 H 1.08999 * 109.46972 * 293.63780 * 7 6 5 29 29 H 1.08992 * 109.47178 * 300.00245 * 10 8 6 30 30 H 1.08997 * 109.46686 * 60.00449 * 10 8 6 31 31 H 1.08998 * 109.46862 * 180.02562 * 10 8 6 32 32 H 0.96997 * 120.00337 * 179.97438 * 14 13 11 33 33 H 0.96998 * 119.99582 * 352.95579 * 20 19 5 34 34 H 0.96992 * 119.99800 * 172.68970 * 20 19 5 35 35 H 1.08005 * 120.77947 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2035 1.1915 0.0000 4 7 3.5238 1.2072 0.0005 5 6 4.2321 0.0904 0.0005 6 7 5.6236 0.1545 0.0016 7 6 6.0900 1.4762 -0.4381 8 6 6.1650 -0.1813 1.3252 9 1 5.7892 -1.1565 1.6348 10 6 5.7287 0.8787 2.3386 11 6 7.6699 -0.2215 1.2569 12 1 8.1738 -0.0183 0.3234 13 6 8.4037 -0.5177 2.3860 14 7 7.7903 -0.7646 3.5228 15 14 10.2690 -0.5682 2.3011 16 1 10.7815 0.7600 1.8785 17 1 10.8165 -0.9063 3.6395 18 1 10.6922 -1.5976 1.3181 19 6 3.5956 -1.1534 0.0005 20 7 4.3454 -2.3358 0.0011 21 6 2.2077 -1.1986 -0.0066 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.6604 2.1250 0.0004 26 1 5.6148 2.2489 0.1663 27 1 7.1719 1.5372 -0.3208 28 1 5.8293 1.6233 -1.4862 29 1 6.1045 1.8538 2.0291 30 1 4.6402 0.9077 2.3880 31 1 6.1308 0.6297 3.3206 32 1 8.3064 -0.9733 4.3171 33 1 5.3092 -2.2988 -0.1015 34 1 3.9015 -3.1915 0.1080 35 1 1.6856 -2.1440 -0.0114 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085425868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:59 Heat of formation + Delta-G solvation = 25.872922 kcal Electronic energy + Delta-G solvation = -17035.070514 eV Core-core repulsion = 14453.312809 eV Total energy + Delta-G solvation = -2581.757705 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.47974 -38.43193 -35.84023 -35.00250 -33.49109 -30.74563 -29.87183 -28.09585 -27.24644 -26.21831 -23.71117 -22.77117 -21.33237 -18.47065 -18.15154 -17.68357 -17.10296 -16.80905 -15.90707 -15.83888 -15.08917 -14.77570 -14.63541 -14.09596 -13.89027 -13.61430 -13.32345 -13.09375 -12.99065 -12.81869 -12.66935 -12.55481 -12.47308 -12.07149 -12.03000 -11.88237 -11.01244 -10.51644 -10.35225 -10.12907 -9.34077 -8.15983 -8.06504 -6.23978 0.42430 0.68711 1.45371 1.46493 1.54121 2.42520 2.93989 3.08180 3.17122 3.27593 3.95064 4.03958 4.30946 4.35692 4.45419 4.70140 4.73845 4.83476 4.88013 4.93360 4.97628 5.03802 5.11497 5.20507 5.24636 5.49675 5.51042 5.64795 5.72270 5.88496 6.11204 6.27857 6.48673 6.85575 6.87517 7.06753 7.36246 7.45499 8.94000 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042229 B = 0.006935 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.892415 B = 4036.589564 C = 4187.766801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.112 4.112 3 C 0.029 3.971 4 N -0.503 5.503 5 C 0.212 3.788 6 N -0.482 5.482 7 C 0.053 3.947 8 C 0.225 3.775 9 H 0.026 0.974 10 C -0.145 4.145 11 C -0.519 4.519 12 H 0.062 0.938 13 C 0.016 3.984 14 N -0.919 5.919 15 Si 0.962 3.038 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.269 1.269 19 C 0.164 3.836 20 N -0.858 5.858 21 C -0.160 4.160 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.165 0.835 26 H 0.030 0.970 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.027 0.973 30 H 0.007 0.993 31 H 0.063 0.937 32 H 0.262 0.738 33 H 0.404 0.596 34 H 0.405 0.595 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.735 -1.265 -6.383 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.130 4.130 4 N -0.216 5.216 5 C -0.024 4.024 6 N -0.201 5.201 7 C -0.095 4.095 8 C 0.119 3.881 9 H 0.044 0.956 10 C -0.204 4.204 11 C -0.557 4.557 12 H 0.080 0.920 13 C -0.183 4.183 14 N -0.559 5.559 15 Si 0.788 3.212 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.194 1.194 19 C 0.054 3.946 20 N -0.398 5.398 21 C -0.191 4.191 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.182 0.818 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.234 0.766 34 H 0.235 0.765 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.040 -0.848 -6.534 12.857 hybrid contribution 0.698 -0.443 0.818 1.163 sum -10.342 -1.291 -5.716 11.887 Atomic orbital electron populations 1.20693 0.87664 1.03802 1.03323 1.20907 0.98858 0.92483 0.99289 1.22541 0.88637 0.98734 1.03075 1.67510 1.09958 1.30660 1.13453 1.19820 0.90653 0.88491 1.03393 1.59966 1.02653 1.29497 1.28008 1.21949 0.99978 0.88848 0.98715 1.19157 0.93929 0.93523 0.81462 0.95577 1.22112 0.95746 0.99195 1.03375 1.21297 0.91067 1.47603 0.95781 0.91975 1.25669 1.02998 0.94765 0.94870 1.70015 1.36932 1.48240 1.00675 0.85546 0.79928 0.78699 0.77045 1.19886 1.21200 1.19418 1.18558 0.92167 0.87172 0.96747 1.42421 1.10165 1.04681 1.82545 1.21104 0.90468 1.00023 1.07507 0.89802 0.90498 0.90371 0.81822 0.95129 0.91697 0.92569 0.95435 0.97419 0.91849 0.92890 0.76607 0.76504 0.82607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 10.03 71.24 0.71 -0.96 16 2 C -0.11 -3.04 5.90 -19.77 -0.12 -3.15 16 3 C 0.03 0.93 10.84 84.61 0.92 1.85 16 4 N -0.50 -20.20 8.48 -192.63 -1.63 -21.83 16 5 C 0.21 8.94 4.89 133.15 0.65 9.59 16 6 N -0.48 -21.93 4.11 -706.07 -2.90 -24.83 16 7 C 0.05 2.31 8.19 127.69 1.05 3.35 16 8 C 0.22 11.52 1.90 44.17 0.08 11.60 16 9 H 0.03 1.45 6.67 -2.39 -0.02 1.43 16 10 C -0.14 -7.60 8.34 71.98 0.60 -7.00 16 11 C -0.52 -28.06 7.79 25.60 0.20 -27.86 16 12 H 0.06 3.33 6.82 -2.91 -0.02 3.31 16 13 C 0.02 0.87 5.30 84.65 0.45 1.32 16 14 N -0.92 -52.32 11.32 21.45 0.24 -52.08 16 15 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 17 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 19 C 0.16 5.94 6.56 38.34 0.25 6.19 16 20 N -0.86 -28.11 8.38 -50.69 -0.42 -28.54 16 21 C -0.16 -4.65 9.72 22.56 0.22 -4.43 16 22 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 24 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 25 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 26 H 0.03 1.37 6.13 -2.39 -0.01 1.35 16 27 H 0.06 2.90 6.27 -2.39 -0.01 2.88 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.03 1.41 6.62 -2.39 -0.02 1.39 16 30 H 0.01 0.35 7.21 -2.39 -0.02 0.34 16 31 H 0.06 3.60 6.07 -2.39 -0.01 3.59 16 32 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.40 14.97 7.35 -92.71 -0.68 14.29 16 34 H 0.40 10.24 8.87 -92.71 -0.82 9.42 16 35 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -63.08 281.51 1.94 -61.14 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -0.39 Total: 30.60 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 5.02 Total: -9.50 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -4.72 Total: -127.29 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -63.08 1.94 -61.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085425868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.014 kcal (2) G-P(sol) polarization free energy of solvation -63.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds