Wall clock time and date at job start Mon Mar 30 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47741 * 2 1 4 4 C 1.53003 * 109.47198 * 239.99607 * 2 1 3 5 5 C 1.50693 * 109.47108 * 175.00051 * 4 2 1 6 6 C 1.38269 * 119.94206 * 90.00614 * 5 4 2 7 7 C 1.38144 * 120.05560 * 179.69986 * 6 5 4 8 8 C 1.38733 * 119.94373 * 0.27215 * 7 6 5 9 9 O 1.35896 * 120.05711 * 180.02562 * 8 7 6 10 10 C 1.38732 * 119.88831 * 0.02562 * 8 7 6 11 11 C 1.38141 * 119.94517 * 0.02562 * 10 8 7 12 12 N 1.46503 * 109.46872 * 119.99800 * 2 1 3 13 13 C 1.46504 * 119.99991 * 60.00073 * 12 2 1 14 14 C 1.36934 * 120.00117 * 239.99532 * 12 2 1 15 15 H 1.07996 * 119.99963 * 23.15981 * 14 12 2 16 16 C 1.38812 * 120.00154 * 203.15916 * 14 12 2 17 17 N 1.31616 * 120.00103 * 11.08869 * 16 14 12 18 18 Si 1.86802 * 120.00159 * 191.08207 * 16 14 12 19 19 H 1.48499 * 109.46825 * 59.99981 * 18 16 14 20 20 H 1.48498 * 109.47009 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47163 * 300.00283 * 18 16 14 22 22 H 1.08998 * 109.47370 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46944 * 300.00312 * 1 2 3 24 24 H 1.09004 * 109.47061 * 60.00033 * 1 2 3 25 25 H 1.09001 * 109.46581 * 55.00343 * 4 2 1 26 26 H 1.09001 * 109.46827 * 295.00668 * 4 2 1 27 27 H 1.07995 * 119.97481 * 359.97377 * 6 5 4 28 28 H 1.08001 * 120.03154 * 180.29601 * 7 6 5 29 29 H 0.96704 * 113.99882 * 90.00357 * 9 8 7 30 30 H 1.08005 * 120.02968 * 179.97438 * 10 8 7 31 31 H 1.08003 * 119.97520 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.47330 * 94.90518 * 13 12 2 33 33 H 1.09000 * 109.47017 * 214.90728 * 13 12 2 34 34 H 1.09003 * 109.46740 * 334.90953 * 13 12 2 35 35 H 0.97001 * 120.00279 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6150 -1.3127 6 6 4.3281 -1.5826 -0.7148 7 6 5.7051 -1.4908 -0.7769 8 6 6.2989 -0.4235 -1.4349 9 8 7.6533 -0.3311 -1.4978 10 6 5.5079 0.5493 -2.0286 11 6 4.1314 0.4534 -1.9629 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4281 14 6 2.8056 -0.0251 2.0976 15 1 2.7702 1.0528 2.1530 16 6 3.6491 -0.7361 2.9401 17 7 3.8589 -2.0187 2.7321 18 14 4.4868 0.1275 4.3691 19 1 3.4573 0.6874 5.2812 20 1 5.3291 -0.8452 5.1102 21 1 5.3402 1.2271 3.8514 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6054 -0.2618 -2.1369 26 1 1.7515 -1.7716 -1.2055 27 1 3.8654 -2.4132 -0.2027 28 1 6.3188 -2.2493 -0.3139 29 1 8.0418 -0.7666 -2.2689 30 1 5.9678 1.3813 -2.5411 31 1 3.5150 1.2103 -2.4252 32 1 2.4586 -2.7359 1.0485 33 1 1.5383 -2.2641 2.4972 34 1 0.7327 -2.3230 0.9110 35 1 4.4481 -2.5156 3.3210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119382116.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:00 Heat of formation + Delta-G solvation = -0.455116 kcal Electronic energy + Delta-G solvation = -17150.040436 eV Core-core repulsion = 14534.848310 eV Total energy + Delta-G solvation = -2615.192125 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.15934 -37.10590 -35.58259 -32.64207 -30.28837 -30.18792 -28.85022 -25.94407 -25.33603 -22.96425 -22.08382 -20.94758 -18.87025 -17.86474 -16.77304 -15.35470 -15.22960 -14.78962 -14.64194 -13.84216 -13.45386 -13.25229 -12.86622 -12.52469 -12.08660 -11.82971 -11.70709 -11.62136 -11.28748 -10.93105 -10.73217 -10.64604 -10.33743 -10.18840 -10.12255 -9.79015 -9.71740 -9.66684 -8.45472 -8.21135 -7.72628 -6.62654 -5.62550 -3.06087 1.93304 2.11511 3.46168 3.50547 3.52258 4.34449 4.58688 4.72278 5.38706 5.54197 5.56751 5.57266 5.64299 5.90357 6.02390 6.13212 6.22338 6.27015 6.36296 6.47704 6.48305 6.56260 6.73285 6.81231 6.93219 6.99728 7.05733 7.17188 7.44780 7.46329 7.54644 7.83043 7.90660 8.13740 8.50436 9.35257 9.97922 10.47231 11.42137 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.017418 B = 0.012144 C = 0.008397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.157624 B = 2305.159439 C = 3333.824705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.175 3.825 3 H 0.061 0.939 4 C -0.095 4.095 5 C -0.063 4.063 6 C -0.047 4.047 7 C -0.137 4.137 8 C 0.080 3.920 9 O -0.503 6.503 10 C -0.156 4.156 11 C -0.113 4.113 12 N -0.590 5.590 13 C 0.162 3.838 14 C -0.245 4.245 15 H 0.062 0.938 16 C 0.008 3.992 17 N -0.905 5.905 18 Si 0.896 3.104 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.285 1.285 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.134 0.866 28 H 0.117 0.883 29 H 0.377 0.623 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.029 0.971 33 H 0.040 0.960 34 H -0.003 1.003 35 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 0.764 -10.245 10.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.066 3.934 3 H 0.079 0.921 4 C -0.135 4.135 5 C -0.064 4.064 6 C -0.065 4.065 7 C -0.156 4.156 8 C 0.036 3.964 9 O -0.312 6.312 10 C -0.175 4.175 11 C -0.131 4.131 12 N -0.312 5.312 13 C 0.018 3.982 14 C -0.375 4.375 15 H 0.080 0.920 16 C -0.190 4.190 17 N -0.550 5.550 18 Si 0.727 3.273 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.211 1.211 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.152 0.848 28 H 0.135 0.865 29 H 0.231 0.769 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.015 0.985 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.511 0.954 -9.587 9.648 hybrid contribution 0.766 0.223 0.572 0.982 sum 0.255 1.177 -9.015 9.095 Atomic orbital electron populations 1.22262 0.98522 1.00986 1.00160 1.20400 0.91334 0.95718 0.85952 0.92067 1.21227 0.91278 1.01755 0.99204 1.19765 0.95869 0.94295 0.96437 1.21005 0.92209 0.99156 0.94086 1.21311 0.95757 0.97965 1.00547 1.18428 0.82056 0.95470 1.00396 1.84862 1.17650 1.79259 1.49395 1.21110 0.94010 0.99702 1.02678 1.20752 0.93790 0.97880 1.00676 1.43878 1.57610 1.09454 1.20262 1.20788 0.93733 0.84874 0.98813 1.19072 1.15749 0.90886 1.11747 0.92004 1.24877 0.97693 0.96111 1.00321 1.69995 1.39490 1.07041 1.38521 0.86454 0.79275 0.78693 0.82859 1.21367 1.21772 1.21123 0.93247 0.92948 0.93968 0.92567 0.91721 0.84850 0.86488 0.76927 0.86753 0.86783 0.95264 0.94131 0.98502 0.94009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.18 37.16 0.34 -2.39 16 2 C 0.17 3.48 2.70 -67.93 -0.18 3.30 16 3 H 0.06 1.28 7.87 -51.93 -0.41 0.87 16 4 C -0.10 -1.70 4.78 -27.88 -0.13 -1.83 16 5 C -0.06 -1.23 4.95 -104.60 -0.52 -1.74 16 6 C -0.05 -0.97 9.30 -39.60 -0.37 -1.34 16 7 C -0.14 -2.76 9.99 -39.43 -0.39 -3.15 16 8 C 0.08 1.50 6.70 -39.22 -0.26 1.23 16 9 O -0.50 -8.30 13.50 -19.41 -0.26 -8.56 16 10 C -0.16 -2.74 9.99 -39.43 -0.39 -3.13 16 11 C -0.11 -1.99 9.69 -39.61 -0.38 -2.38 16 12 N -0.59 -14.14 2.19 -173.48 -0.38 -14.52 16 13 C 0.16 3.83 7.89 59.85 0.47 4.30 16 14 C -0.24 -6.64 9.59 -15.06 -0.14 -6.79 16 15 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 16 C 0.01 0.22 5.14 -17.43 -0.09 0.13 16 17 N -0.91 -25.37 10.62 55.49 0.59 -24.79 16 18 Si 0.90 22.49 29.57 -169.99 -5.03 17.47 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 21 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 22 H 0.05 0.83 6.66 -51.93 -0.35 0.48 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 26 H 0.06 1.16 7.45 -51.93 -0.39 0.78 16 27 H 0.13 3.02 6.20 -52.49 -0.33 2.70 16 28 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 29 H 0.38 4.02 9.06 45.56 0.41 4.44 16 30 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 31 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.03 0.73 5.52 -51.93 -0.29 0.44 16 33 H 0.04 1.05 7.28 -51.93 -0.38 0.67 16 34 H 0.00 -0.07 6.44 -51.93 -0.33 -0.41 16 35 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 288.25 15.07 4.34 4.34 Total: -1.00 -29.98 288.25 -6.93 -36.91 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.13 Total: 2.93 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.06 Total: -13.78 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.21 Total: -39.30 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.26 Total: -8.56 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.47 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.98 -6.93 -36.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119382116.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.454 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds