Wall clock time and date at job start Mon Mar 30 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47741 * 2 1 4 4 C 1.53003 * 109.47198 * 239.99607 * 2 1 3 5 5 C 1.50693 * 109.47108 * 175.00051 * 4 2 1 6 6 C 1.38269 * 119.94206 * 90.00614 * 5 4 2 7 7 C 1.38144 * 120.05560 * 179.69986 * 6 5 4 8 8 C 1.38733 * 119.94373 * 0.27215 * 7 6 5 9 9 O 1.35896 * 120.05711 * 180.02562 * 8 7 6 10 10 C 1.38732 * 119.88831 * 0.02562 * 8 7 6 11 11 C 1.38141 * 119.94517 * 0.02562 * 10 8 7 12 12 N 1.46503 * 109.46872 * 119.99800 * 2 1 3 13 13 C 1.46504 * 119.99991 * 60.00073 * 12 2 1 14 14 C 1.36934 * 120.00117 * 239.99532 * 12 2 1 15 15 H 1.07996 * 119.99963 * 23.15981 * 14 12 2 16 16 C 1.38812 * 120.00154 * 203.15916 * 14 12 2 17 17 N 1.31616 * 120.00103 * 11.08869 * 16 14 12 18 18 Si 1.86802 * 120.00159 * 191.08207 * 16 14 12 19 19 H 1.48499 * 109.46825 * 59.99981 * 18 16 14 20 20 H 1.48498 * 109.47009 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47163 * 300.00283 * 18 16 14 22 22 H 1.08998 * 109.47370 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46944 * 300.00312 * 1 2 3 24 24 H 1.09004 * 109.47061 * 60.00033 * 1 2 3 25 25 H 1.09001 * 109.46581 * 55.00343 * 4 2 1 26 26 H 1.09001 * 109.46827 * 295.00668 * 4 2 1 27 27 H 1.07995 * 119.97481 * 359.97377 * 6 5 4 28 28 H 1.08001 * 120.03154 * 180.29601 * 7 6 5 29 29 H 0.96704 * 113.99882 * 90.00357 * 9 8 7 30 30 H 1.08005 * 120.02968 * 179.97438 * 10 8 7 31 31 H 1.08003 * 119.97520 * 180.02562 * 11 10 8 32 32 H 1.08998 * 109.47330 * 94.90518 * 13 12 2 33 33 H 1.09000 * 109.47017 * 214.90728 * 13 12 2 34 34 H 1.09003 * 109.46740 * 334.90953 * 13 12 2 35 35 H 0.97001 * 120.00279 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6150 -1.3127 6 6 4.3281 -1.5826 -0.7148 7 6 5.7051 -1.4908 -0.7769 8 6 6.2989 -0.4235 -1.4349 9 8 7.6533 -0.3311 -1.4978 10 6 5.5079 0.5493 -2.0286 11 6 4.1314 0.4534 -1.9629 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4281 14 6 2.8056 -0.0251 2.0976 15 1 2.7702 1.0528 2.1530 16 6 3.6491 -0.7361 2.9401 17 7 3.8589 -2.0187 2.7321 18 14 4.4868 0.1275 4.3691 19 1 3.4573 0.6874 5.2812 20 1 5.3291 -0.8452 5.1102 21 1 5.3402 1.2271 3.8514 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6054 -0.2618 -2.1369 26 1 1.7515 -1.7716 -1.2055 27 1 3.8654 -2.4132 -0.2027 28 1 6.3188 -2.2493 -0.3139 29 1 8.0418 -0.7666 -2.2689 30 1 5.9678 1.3813 -2.5411 31 1 3.5150 1.2103 -2.4252 32 1 2.4586 -2.7359 1.0485 33 1 1.5383 -2.2641 2.4972 34 1 0.7327 -2.3230 0.9110 35 1 4.4481 -2.5156 3.3210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119382116.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:00 Heat of formation + Delta-G solvation = -18.615724 kcal Electronic energy + Delta-G solvation = -17150.827939 eV Core-core repulsion = 14534.848310 eV Total energy + Delta-G solvation = -2615.979628 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.58148 -38.63623 -37.13772 -34.47189 -31.94515 -31.67892 -30.46999 -27.92463 -26.74763 -24.83343 -23.53519 -22.41877 -20.51530 -19.22860 -18.73788 -17.03320 -16.73701 -16.43763 -16.05602 -15.70463 -15.00989 -14.88508 -14.40553 -14.17713 -13.68959 -13.48572 -13.19888 -13.07690 -12.80630 -12.74037 -12.54443 -12.34929 -12.24256 -12.01041 -11.64269 -11.62421 -11.35567 -11.18020 -10.52938 -9.68495 -9.18530 -8.57863 -7.70879 -5.14188 0.50279 0.66115 1.44195 1.45633 1.49919 2.55315 2.92360 3.41449 3.43519 3.77421 4.11856 4.12704 4.23144 4.42783 4.63996 4.69474 4.73865 4.79989 4.91968 4.97490 5.06844 5.16923 5.20395 5.30552 5.39221 5.46954 5.55589 5.63202 5.70078 5.73648 5.87670 6.00805 6.19362 6.44643 6.95363 7.29318 8.03144 8.45597 9.30107 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.017418 B = 0.012144 C = 0.008397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.157624 B = 2305.159439 C = 3333.824705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.168 3.832 3 H 0.052 0.948 4 C -0.086 4.086 5 C -0.079 4.079 6 C -0.064 4.064 7 C -0.162 4.162 8 C 0.081 3.919 9 O -0.512 6.512 10 C -0.157 4.157 11 C -0.109 4.109 12 N -0.600 5.600 13 C 0.179 3.821 14 C -0.246 4.246 15 H 0.056 0.944 16 C -0.038 4.038 17 N -0.920 5.920 18 Si 0.943 3.057 19 H -0.282 1.282 20 H -0.297 1.297 21 H -0.288 1.288 22 H 0.050 0.950 23 H 0.040 0.960 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.404 0.596 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.010 0.990 33 H 0.008 0.992 34 H 0.026 0.974 35 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 2.415 -12.030 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.061 3.939 3 H 0.070 0.930 4 C -0.125 4.125 5 C -0.080 4.080 6 C -0.082 4.082 7 C -0.181 4.181 8 C 0.037 3.963 9 O -0.324 6.324 10 C -0.175 4.175 11 C -0.127 4.127 12 N -0.323 5.323 13 C 0.034 3.966 14 C -0.376 4.376 15 H 0.074 0.926 16 C -0.234 4.234 17 N -0.567 5.567 18 Si 0.773 3.227 19 H -0.208 1.208 20 H -0.224 1.224 21 H -0.215 1.215 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.261 0.739 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.029 0.971 33 H 0.027 0.973 34 H 0.045 0.955 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.154 2.612 -11.409 11.761 hybrid contribution 0.995 -0.254 1.050 1.468 sum -0.160 2.359 -10.359 10.625 Atomic orbital electron populations 1.22132 0.95868 1.01469 1.01391 1.20616 0.93160 0.94888 0.85243 0.93015 1.21136 0.90464 1.01462 0.99450 1.19986 0.96638 0.94528 0.96811 1.20859 0.92791 0.99377 0.95216 1.21379 0.95708 0.99046 1.01972 1.18512 0.83018 0.95022 0.99780 1.84782 1.16636 1.79640 1.51332 1.21458 0.94073 0.99893 1.02073 1.21125 0.94325 0.97620 0.99583 1.44001 1.57327 1.09400 1.21532 1.20507 0.94397 0.84828 0.96891 1.19227 1.15408 0.90754 1.12241 0.92640 1.25399 0.98904 0.96756 1.02309 1.70140 1.40035 1.07716 1.38823 0.85716 0.78403 0.77539 0.80994 1.20796 1.22386 1.21514 0.93085 0.94110 0.90376 0.88775 0.92288 0.87721 0.87439 0.73861 0.83823 0.83509 0.97144 0.97324 0.95538 0.94946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 9.18 71.98 0.66 -3.98 16 2 C 0.17 6.35 2.70 44.99 0.12 6.47 16 3 H 0.05 2.05 7.87 -2.39 -0.02 2.03 16 4 C -0.09 -2.85 4.78 29.85 0.14 -2.71 16 5 C -0.08 -2.95 4.95 -19.85 -0.10 -3.05 16 6 C -0.06 -2.73 9.30 22.25 0.21 -2.52 16 7 C -0.16 -6.64 9.99 22.37 0.22 -6.42 16 8 C 0.08 2.90 6.70 22.51 0.15 3.05 16 9 O -0.51 -15.98 13.50 -92.38 -1.25 -17.23 16 10 C -0.16 -5.03 9.99 22.36 0.22 -4.81 16 11 C -0.11 -3.50 9.69 22.25 0.22 -3.28 16 12 N -0.60 -28.60 2.19 -702.76 -1.54 -30.13 16 13 C 0.18 8.52 7.89 127.77 1.01 9.53 16 14 C -0.25 -13.38 9.59 84.03 0.81 -12.58 16 15 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 16 C -0.04 -2.12 5.14 84.86 0.44 -1.69 16 17 N -0.92 -53.17 10.62 21.65 0.23 -52.94 16 18 Si 0.94 46.80 29.57 68.60 2.03 48.83 16 19 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 20 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 21 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 22 H 0.05 1.56 6.66 -2.39 -0.02 1.54 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.09 2.41 8.09 -2.39 -0.02 2.39 16 26 H 0.06 2.02 7.45 -2.39 -0.02 2.00 16 27 H 0.10 4.99 6.20 -2.91 -0.02 4.98 16 28 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 29 H 0.40 7.74 9.06 -74.05 -0.67 7.07 16 30 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.01 0.54 5.52 -2.39 -0.01 0.53 16 33 H 0.01 0.43 7.28 -2.39 -0.02 0.41 16 34 H 0.03 1.08 6.44 -2.39 -0.02 1.06 16 35 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -64.99 288.25 3.98 -61.01 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.41 Total: 12.45 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 4.10 Total: -21.98 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -1.31 Total: -83.08 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -1.25 Total: -17.23 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -64.99 3.98 -61.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119382116.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.395 kcal (2) G-P(sol) polarization free energy of solvation -64.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds