Wall clock time and date at job start Mon Mar 30 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31987 * 119.62867 * 2 1 4 4 C 1.32315 * 121.69928 * 179.97438 * 3 2 1 5 5 N 1.39315 * 119.62625 * 179.97438 * 4 3 2 6 6 C 1.46501 * 119.99854 * 8.62874 * 5 4 3 7 7 C 1.46504 * 120.00213 * 188.63174 * 5 4 3 8 8 H 1.08998 * 109.46706 * 7.23991 * 7 5 4 9 9 C 1.52994 * 109.47121 * 247.23954 * 7 5 4 10 10 C 1.50696 * 109.47278 * 127.23594 * 7 5 4 11 11 H 1.08004 * 119.99961 * 0.02562 * 10 7 5 12 12 C 1.37877 * 120.00129 * 179.97438 * 10 7 5 13 13 N 1.31517 * 119.99562 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 120.00184 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.46964 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47229 * 119.99916 * 14 12 10 17 17 H 1.48499 * 109.47458 * 240.00325 * 14 12 10 18 18 C 1.39090 * 120.74862 * 359.97438 * 4 3 2 19 19 C 1.38273 * 119.17145 * 359.97438 * 18 4 3 20 20 C 1.38643 * 119.61853 * 180.27577 * 2 1 3 21 21 N 1.40036 * 120.40955 * 0.02729 * 20 2 1 22 22 H 1.09000 * 109.46595 * 90.00523 * 1 2 3 23 23 H 1.08997 * 109.47358 * 210.00066 * 1 2 3 24 24 H 1.08996 * 109.46933 * 330.00207 * 1 2 3 25 25 H 1.09000 * 109.47098 * 90.00182 * 6 5 4 26 26 H 1.09003 * 109.46930 * 210.00044 * 6 5 4 27 27 H 1.08994 * 109.47506 * 330.00258 * 6 5 4 28 28 H 1.09007 * 109.47396 * 59.99594 * 9 7 5 29 29 H 1.08995 * 109.47319 * 179.97438 * 9 7 5 30 30 H 1.08998 * 109.47361 * 299.99636 * 9 7 5 31 31 H 0.97007 * 119.99503 * 179.97438 * 13 12 10 32 32 H 1.07994 * 120.41093 * 179.97438 * 18 4 3 33 33 H 1.08001 * 120.77875 * 180.02562 * 19 18 4 34 34 H 0.97006 * 120.00022 * 180.25159 * 21 20 2 35 35 H 0.97004 * 120.00654 * 0.25578 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1596 1.1473 0.0000 4 6 3.4819 1.1951 0.0005 5 7 4.1263 2.4302 -0.0001 6 6 3.3530 3.6600 0.1892 7 6 5.5774 2.4993 -0.1899 8 1 5.9584 1.5094 -0.4409 9 6 6.2379 2.9879 1.1007 10 6 5.8925 3.4575 -1.3096 11 1 5.0920 3.9646 -1.8276 12 6 7.2028 3.6875 -1.6719 13 7 8.1775 3.0702 -1.0406 14 14 7.5934 4.8757 -3.0592 15 1 6.3296 5.4356 -3.6020 16 1 8.4411 5.9796 -2.5416 17 1 8.3199 4.1571 -4.1367 18 6 4.2357 0.0262 0.0016 19 6 3.5864 -1.1946 0.0027 20 6 2.1923 -1.2053 -0.0058 21 7 1.4927 -2.4183 -0.0122 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 3.2975 3.8944 1.2522 26 1 3.8397 4.4801 -0.3388 27 1 2.3465 3.5206 -0.2051 28 1 6.0100 2.2949 1.9105 29 1 7.3175 3.0389 0.9596 30 1 5.8569 3.9778 1.3516 31 1 9.0994 3.2317 -1.2958 32 1 5.3147 0.0716 0.0016 33 1 4.1460 -2.1182 0.0040 34 1 1.9781 -3.2582 -0.0126 35 1 0.5226 -2.4189 -0.0164 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122730539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:10 Heat of formation + Delta-G solvation = 46.067963 kcal Electronic energy + Delta-G solvation = -16647.659348 eV Core-core repulsion = 14066.777366 eV Total energy + Delta-G solvation = -2580.881982 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.74529 -36.65781 -34.24453 -32.64950 -32.17308 -29.76332 -28.39845 -27.23640 -25.20337 -24.52654 -21.87738 -21.74521 -19.37690 -17.22055 -16.60582 -16.10569 -15.83879 -14.82107 -14.46352 -14.29026 -13.72696 -13.25316 -13.17320 -12.60394 -12.18090 -12.02772 -11.97068 -11.72091 -11.55056 -11.17365 -10.98500 -10.87619 -10.76436 -10.48199 -10.13185 -10.10782 -9.12413 -8.88933 -8.76393 -8.43262 -8.01223 -6.20004 -5.95033 -4.16375 1.88448 2.28793 3.25691 3.33882 3.38354 4.04059 4.27992 4.41290 4.58842 5.03353 5.21183 5.23242 5.63830 5.72373 5.81341 5.90663 6.00859 6.31479 6.41728 6.45018 6.55739 6.62387 6.72483 6.81861 6.94326 7.06351 7.12863 7.45830 7.67238 7.81149 7.85166 8.05404 8.12089 8.24649 8.68384 8.82470 9.08458 9.51036 10.95382 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036320 B = 0.006366 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.738063 B = 4397.647254 C = 4570.470190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.098 3.902 3 N -0.522 5.522 4 C 0.379 3.621 5 N -0.593 5.593 6 C 0.108 3.892 7 C 0.271 3.729 8 H 0.050 0.950 9 C -0.149 4.149 10 C -0.522 4.522 11 H 0.063 0.937 12 C 0.064 3.936 13 N -0.891 5.891 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.198 4.198 19 C -0.105 4.105 20 C 0.080 3.920 21 N -0.887 5.887 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.011 0.989 29 H 0.091 0.909 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.137 0.863 33 H 0.122 0.878 34 H 0.390 0.610 35 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.249 -7.452 2.624 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 N -0.241 5.241 4 C 0.141 3.859 5 N -0.305 5.305 6 C -0.036 4.036 7 C 0.170 3.830 8 H 0.067 0.933 9 C -0.208 4.208 10 C -0.561 4.561 11 H 0.081 0.919 12 C -0.138 4.138 13 N -0.529 5.529 14 Si 0.726 3.274 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.224 4.224 19 C -0.135 4.135 20 C -0.025 4.025 21 N -0.432 5.432 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.217 0.783 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.355 -6.396 2.622 12.451 hybrid contribution 0.722 -0.469 -0.757 1.146 sum -9.633 -6.865 1.865 11.975 Atomic orbital electron populations 1.20465 0.90215 1.02164 1.01964 1.20242 0.95526 0.86579 1.02077 1.66841 1.08398 1.28320 1.20546 1.18320 0.87410 0.86962 0.93160 1.46969 1.08018 1.01118 1.74396 1.21291 0.95786 0.87670 0.98857 1.18890 0.72878 0.97940 0.93327 0.93266 1.22127 1.04375 0.97985 0.96287 1.21432 0.92294 1.25722 1.16664 0.91930 1.24890 0.96085 0.96140 0.96711 1.69884 0.99573 1.42573 1.40910 0.86435 0.78386 0.80732 0.81857 1.19758 1.20928 1.20953 1.21435 1.01317 0.91122 1.08541 1.20717 0.91923 0.97838 1.02993 1.18153 0.91682 0.87198 1.05419 1.42154 1.07982 1.04334 1.88716 0.91453 0.92018 0.90976 0.95467 0.91227 0.92253 0.97006 0.89014 0.95088 0.92766 0.84539 0.86004 0.78342 0.78094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.73 36.01 0.35 -0.79 16 2 C 0.10 1.67 6.80 -82.37 -0.56 1.11 16 3 N -0.52 -10.57 8.98 -8.47 -0.08 -10.64 16 4 C 0.38 8.24 7.36 -154.80 -1.14 7.10 16 5 N -0.59 -13.58 2.88 -175.35 -0.50 -14.09 16 6 C 0.11 2.23 9.80 59.85 0.59 2.82 16 7 C 0.27 6.76 2.49 -69.09 -0.17 6.59 16 8 H 0.05 1.30 5.48 -51.93 -0.28 1.02 16 9 C -0.15 -3.58 9.07 37.15 0.34 -3.25 16 10 C -0.52 -14.06 7.96 -34.44 -0.27 -14.34 16 11 H 0.06 1.71 6.83 -52.48 -0.36 1.35 16 12 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 13 N -0.89 -24.55 11.32 55.43 0.63 -23.92 16 14 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C -0.20 -3.98 9.25 -39.25 -0.36 -4.35 16 19 C -0.10 -1.76 10.04 -39.13 -0.39 -2.16 16 20 C 0.08 1.26 6.76 -83.52 -0.56 0.70 16 21 N -0.89 -9.96 9.00 32.53 0.29 -9.66 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.61 6.55 -51.93 -0.34 0.27 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.47 6.48 -51.93 -0.34 1.14 16 27 H 0.06 1.18 7.26 -51.93 -0.38 0.80 16 28 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 30 H 0.03 0.72 7.86 -51.93 -0.41 0.31 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.14 2.82 5.92 -52.49 -0.31 2.51 16 33 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.39 3.62 8.86 -40.82 -0.36 3.26 16 35 H 0.39 3.61 6.84 -40.82 -0.28 3.33 16 LS Contribution 284.67 15.07 4.29 4.29 Total: -1.00 -29.36 284.67 -7.30 -36.66 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.62 Total: 6.34 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.29 Total: -4.94 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.34 Total: -58.31 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.36 -7.30 -36.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122730539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.726 kcal (2) G-P(sol) polarization free energy of solvation -29.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds