Wall clock time and date at job start Mon Mar 30 2020 03:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47474 * 325.00605 * 10 9 7 12 12 C 1.53007 * 109.46908 * 85.00241 * 10 9 7 13 13 C 1.52998 * 109.47127 * 60.00037 * 12 10 9 14 14 C 1.52995 * 109.47273 * 59.99663 * 13 12 10 15 15 C 1.52999 * 109.47466 * 300.00048 * 14 13 12 16 16 C 1.52998 * 109.47304 * 204.99863 * 10 9 7 17 17 H 1.08994 * 109.47279 * 179.97438 * 16 10 9 18 18 N 1.46503 * 109.46993 * 60.00054 * 16 10 9 19 19 C 1.34944 * 126.04245 * 275.00578 * 18 16 10 20 20 C 1.35311 * 107.75319 * 179.97438 * 19 18 16 21 21 C 1.39877 * 107.91684 * 0.02562 * 20 19 18 22 22 N 1.30833 * 108.20051 * 359.73721 * 21 20 19 23 23 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 24 24 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.46844 * 180.02562 * 12 10 9 26 26 H 1.08998 * 109.46879 * 299.99671 * 12 10 9 27 27 H 1.08994 * 109.46949 * 180.02562 * 13 12 10 28 28 H 1.09005 * 109.46906 * 300.00062 * 13 12 10 29 29 H 1.09005 * 109.46829 * 60.00351 * 14 13 12 30 30 H 1.09001 * 109.47452 * 179.97438 * 14 13 12 31 31 H 1.08997 * 109.47498 * 179.97438 * 15 14 13 32 32 H 1.08995 * 109.47341 * 300.00096 * 15 14 13 33 33 H 1.08005 * 126.12176 * 359.95280 * 19 18 16 34 34 H 1.07999 * 126.04316 * 179.97438 * 20 19 18 35 35 H 1.07993 * 125.89633 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5505 -0.5888 12 6 2.4220 -4.0355 1.4376 13 6 1.1437 -4.1847 2.2649 14 6 0.2666 -5.2800 1.6553 15 6 -0.0973 -4.9013 0.2183 16 6 1.1811 -4.7521 -0.6090 17 1 1.7263 -5.6959 -0.6095 18 7 0.8326 -4.3895 -1.9850 19 6 -0.1953 -3.6008 -2.3622 20 6 -0.1740 -3.5127 -3.7123 21 6 0.9037 -4.2742 -4.1762 22 7 1.5109 -4.7959 -3.1414 23 1 -0.4850 -0.8401 -0.0004 24 1 0.3556 -2.3881 -0.0002 25 1 2.9675 -4.9793 1.4376 26 1 3.0469 -3.2551 1.8719 27 1 1.4029 -4.4541 3.2888 28 1 0.5986 -3.2407 2.2649 29 1 0.8116 -6.2240 1.6553 30 1 -0.6440 -5.3867 2.2449 31 1 -0.7218 -5.6818 -0.2162 32 1 -0.6423 -3.9574 0.2182 33 1 -0.9077 -3.1253 -1.7043 34 1 -0.8671 -2.9539 -4.3237 35 1 1.1883 -4.4048 -5.2098 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128058874.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:19 Heat of formation + Delta-G solvation = 80.280915 kcal Electronic energy + Delta-G solvation = -17425.955048 eV Core-core repulsion = 14846.556651 eV Total energy + Delta-G solvation = -2579.398397 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78606 -38.37675 -34.00145 -32.53684 -31.08876 -29.52990 -28.87243 -27.47542 -23.60065 -22.84132 -22.13346 -20.35173 -20.16415 -18.68578 -17.32988 -16.87444 -15.53149 -14.65805 -14.41953 -14.03236 -13.75999 -13.69919 -13.41785 -13.01991 -12.48348 -12.29632 -12.05644 -11.80260 -11.69315 -11.00786 -10.80536 -10.75419 -10.44521 -10.16903 -10.14089 -9.95987 -9.89350 -9.23393 -8.94741 -8.80551 -8.01926 -7.07206 -6.12885 -3.12671 2.48037 3.00120 3.38031 3.50742 3.54202 3.70988 4.63097 4.75921 4.96367 5.13295 5.25855 5.34531 5.40077 5.48735 5.56698 5.63759 5.64758 5.81874 5.87598 5.98000 6.07494 6.13845 6.18893 6.29641 6.37786 6.49876 6.55060 6.66026 6.76961 6.87500 7.17248 7.58872 7.78224 8.24338 8.71195 9.16237 10.02466 10.16664 11.34673 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019004 B = 0.011136 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.049089 B = 2513.795549 C = 3442.014673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.041 4.041 3 Si 1.078 2.922 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.326 4.326 8 H 0.063 0.937 9 N -0.725 5.725 10 C 0.172 3.828 11 H 0.055 0.945 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.109 4.109 15 C -0.126 4.126 16 C 0.154 3.846 17 H 0.095 0.905 18 N -0.348 5.348 19 C 0.086 3.914 20 C -0.289 4.289 21 C 0.036 3.964 22 N -0.309 5.309 23 H 0.251 0.749 24 H 0.365 0.635 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.164 0.836 34 H 0.139 0.861 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 -10.381 -0.203 10.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.239 4.239 3 Si 0.909 3.091 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.456 4.456 8 H 0.081 0.919 9 N -0.369 5.369 10 C 0.060 3.940 11 H 0.073 0.927 12 C -0.172 4.172 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.165 4.165 16 C 0.051 3.949 17 H 0.113 0.887 18 N -0.129 5.129 19 C -0.062 4.062 20 C -0.318 4.318 21 C -0.149 4.149 22 N -0.131 5.131 23 H 0.062 0.938 24 H 0.200 0.800 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.181 0.819 34 H 0.157 0.843 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.616 -9.460 0.307 9.485 hybrid contribution -0.690 -0.981 -0.319 1.241 sum -0.074 -10.441 -0.012 10.441 Atomic orbital electron populations 1.70926 1.05960 1.27991 1.53835 1.25680 0.97007 1.00799 1.00403 0.83266 0.74272 0.75774 0.75822 1.21040 1.22364 1.22342 1.19986 0.91930 0.85622 1.48107 0.91946 1.42370 1.04497 1.00371 1.89623 1.20532 0.94146 0.85786 0.93516 0.92736 1.22112 0.97242 1.00062 0.97780 1.21447 0.96837 0.99212 0.97815 1.21447 0.99978 0.98911 0.94358 1.21847 0.96306 1.02528 0.95785 1.21662 0.97426 0.99620 0.76155 0.88675 1.48631 1.21448 1.37230 1.05568 1.22328 0.93035 0.94574 0.96227 1.21346 1.05347 1.11192 0.93954 1.23662 0.95164 0.97963 0.98124 1.77194 1.20113 1.24709 0.91098 0.93787 0.79999 0.93385 0.91332 0.92842 0.90688 0.92169 0.91684 0.91684 0.90668 0.81885 0.84268 0.80848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.19 13.70 55.49 0.76 -27.43 16 2 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 3 Si 1.08 25.99 29.92 -169.99 -5.09 20.91 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.33 -8.95 9.93 -15.06 -0.15 -9.10 16 8 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.72 -17.16 3.66 -53.42 -0.20 -17.36 16 10 C 0.17 3.41 2.76 -67.93 -0.19 3.22 16 11 H 0.05 1.22 8.08 -51.93 -0.42 0.80 16 12 C -0.13 -2.25 5.61 -26.73 -0.15 -2.40 16 13 C -0.12 -1.81 5.77 -26.73 -0.15 -1.96 16 14 C -0.11 -1.44 5.92 -26.73 -0.16 -1.60 16 15 C -0.13 -1.87 4.67 -26.73 -0.12 -2.00 16 16 C 0.15 2.65 2.98 -67.93 -0.20 2.45 16 17 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 18 N -0.35 -6.62 3.47 -54.86 -0.19 -6.81 16 19 C 0.09 1.63 9.54 -17.23 -0.16 1.47 16 20 C -0.29 -5.14 10.80 -40.01 -0.43 -5.57 16 21 C 0.04 0.63 12.03 -17.36 -0.21 0.42 16 22 N -0.31 -6.03 12.58 30.62 0.39 -5.65 16 23 H 0.25 7.32 6.77 -40.82 -0.28 7.04 16 24 H 0.37 8.73 3.94 -40.82 -0.16 8.57 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.41 7.60 -51.93 -0.39 1.01 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.24 5.52 -51.93 -0.29 0.95 16 33 H 0.16 3.00 6.84 -52.48 -0.36 2.64 16 34 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 279.85 15.07 4.22 4.22 Total: -1.00 -31.33 279.85 -7.05 -38.38 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -4.91 Total: 10.10 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -2.03 Total: -16.35 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.76 Total: -57.25 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.09 Total: 20.91 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.33 -7.05 -38.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128058874.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.660 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds