Wall clock time and date at job start Mon Mar 30 2020 03:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47474 * 325.00605 * 10 9 7 12 12 C 1.53007 * 109.46908 * 85.00241 * 10 9 7 13 13 C 1.52998 * 109.47127 * 60.00037 * 12 10 9 14 14 C 1.52995 * 109.47273 * 59.99663 * 13 12 10 15 15 C 1.52999 * 109.47466 * 300.00048 * 14 13 12 16 16 C 1.52998 * 109.47304 * 204.99863 * 10 9 7 17 17 H 1.08994 * 109.47279 * 179.97438 * 16 10 9 18 18 N 1.46503 * 109.46993 * 60.00054 * 16 10 9 19 19 C 1.34944 * 126.04245 * 275.00578 * 18 16 10 20 20 C 1.35311 * 107.75319 * 179.97438 * 19 18 16 21 21 C 1.39877 * 107.91684 * 0.02562 * 20 19 18 22 22 N 1.30833 * 108.20051 * 359.73721 * 21 20 19 23 23 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 24 24 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.46844 * 180.02562 * 12 10 9 26 26 H 1.08998 * 109.46879 * 299.99671 * 12 10 9 27 27 H 1.08994 * 109.46949 * 180.02562 * 13 12 10 28 28 H 1.09005 * 109.46906 * 300.00062 * 13 12 10 29 29 H 1.09005 * 109.46829 * 60.00351 * 14 13 12 30 30 H 1.09001 * 109.47452 * 179.97438 * 14 13 12 31 31 H 1.08997 * 109.47498 * 179.97438 * 15 14 13 32 32 H 1.08995 * 109.47341 * 300.00096 * 15 14 13 33 33 H 1.08005 * 126.12176 * 359.95280 * 19 18 16 34 34 H 1.07999 * 126.04316 * 179.97438 * 20 19 18 35 35 H 1.07993 * 125.89633 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5505 -0.5888 12 6 2.4220 -4.0355 1.4376 13 6 1.1437 -4.1847 2.2649 14 6 0.2666 -5.2800 1.6553 15 6 -0.0973 -4.9013 0.2183 16 6 1.1811 -4.7521 -0.6090 17 1 1.7263 -5.6959 -0.6095 18 7 0.8326 -4.3895 -1.9850 19 6 -0.1953 -3.6008 -2.3622 20 6 -0.1740 -3.5127 -3.7123 21 6 0.9037 -4.2742 -4.1762 22 7 1.5109 -4.7959 -3.1414 23 1 -0.4850 -0.8401 -0.0004 24 1 0.3556 -2.3881 -0.0002 25 1 2.9675 -4.9793 1.4376 26 1 3.0469 -3.2551 1.8719 27 1 1.4029 -4.4541 3.2888 28 1 0.5986 -3.2407 2.2649 29 1 0.8116 -6.2240 1.6553 30 1 -0.6440 -5.3867 2.2449 31 1 -0.7218 -5.6818 -0.2162 32 1 -0.6423 -3.9574 0.2182 33 1 -0.9077 -3.1253 -1.7043 34 1 -0.8671 -2.9539 -4.3237 35 1 1.1883 -4.4048 -5.2098 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128058874.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:19 Heat of formation + Delta-G solvation = 61.258031 kcal Electronic energy + Delta-G solvation = -17426.779942 eV Core-core repulsion = 14846.556651 eV Total energy + Delta-G solvation = -2580.223291 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.19760 -39.80604 -35.89084 -33.89252 -32.81838 -30.97872 -30.36336 -29.04775 -25.66928 -24.18321 -23.49100 -21.80357 -21.55917 -20.17138 -19.27266 -18.30998 -17.22079 -16.14109 -15.84905 -15.63411 -15.42515 -15.15533 -15.01265 -14.47263 -13.84994 -13.68247 -13.42768 -13.28535 -13.17822 -12.70913 -12.56908 -12.25725 -11.93810 -11.82627 -11.58084 -11.44368 -11.33283 -11.20870 -10.90442 -10.26201 -9.47802 -9.06777 -8.37229 -5.29746 1.03046 1.54680 1.62445 1.64904 1.79908 1.99423 2.67885 3.38105 3.45087 3.65768 3.74211 3.93113 3.93717 4.01465 4.18272 4.28301 4.32851 4.49175 4.55867 4.68107 4.72359 4.84218 4.93542 4.98418 5.07421 5.17261 5.18198 5.23674 5.39294 5.51274 5.60663 5.83431 6.17234 6.51792 6.82890 7.09910 7.98893 8.10589 9.14209 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019004 B = 0.011136 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.049089 B = 2513.795549 C = 3442.014673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.095 4.095 3 Si 1.120 2.880 4 H -0.291 1.291 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.324 4.324 8 H 0.053 0.947 9 N -0.730 5.730 10 C 0.168 3.832 11 H 0.022 0.978 12 C -0.124 4.124 13 C -0.111 4.111 14 C -0.101 4.101 15 C -0.119 4.119 16 C 0.156 3.844 17 H 0.114 0.886 18 N -0.357 5.357 19 C 0.066 3.934 20 C -0.296 4.296 21 C 0.038 3.962 22 N -0.337 5.337 23 H 0.244 0.756 24 H 0.363 0.637 25 H 0.081 0.919 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -11.843 -0.104 11.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.287 4.287 3 Si 0.947 3.053 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.455 4.455 8 H 0.071 0.929 9 N -0.373 5.373 10 C 0.058 3.942 11 H 0.040 0.960 12 C -0.165 4.165 13 C -0.149 4.149 14 C -0.138 4.138 15 C -0.157 4.157 16 C 0.054 3.946 17 H 0.132 0.868 18 N -0.138 5.138 19 C -0.081 4.081 20 C -0.325 4.325 21 C -0.146 4.146 22 N -0.158 5.158 23 H 0.054 0.946 24 H 0.198 0.802 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.177 0.823 34 H 0.176 0.824 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.873 -10.971 0.417 11.013 hybrid contribution -0.719 -0.579 -0.397 1.005 sum 0.153 -11.550 0.020 11.551 Atomic orbital electron populations 1.71006 1.06786 1.27696 1.56213 1.26872 0.97157 1.03879 1.00819 0.82698 0.73484 0.72459 0.76707 1.21657 1.21393 1.20597 1.20202 0.91727 0.87218 1.46400 0.92921 1.42389 1.04446 1.00772 1.89742 1.20674 0.93099 0.85393 0.95009 0.95967 1.21998 0.98154 1.00720 0.95614 1.21392 0.95869 0.98507 0.99092 1.21445 1.00689 0.98819 0.92893 1.21828 0.95082 1.02085 0.96746 1.21747 0.98306 0.98838 0.75732 0.86841 1.48802 1.21453 1.37506 1.06017 1.22503 0.93459 0.95150 0.97000 1.21717 1.05853 1.11124 0.93795 1.24293 0.94294 0.96679 0.99379 1.77147 1.21027 1.25866 0.91794 0.94574 0.80210 0.90057 0.93896 0.90529 0.94502 0.89391 0.89674 0.89688 0.92949 0.82258 0.82383 0.77250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.22 13.70 21.65 0.30 -58.92 16 2 C -0.10 -5.49 5.50 84.86 0.47 -5.03 16 3 Si 1.12 52.90 29.92 68.60 2.05 54.96 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.32 -18.20 9.93 84.03 0.83 -17.36 16 8 H 0.05 3.00 7.83 -2.91 -0.02 2.98 16 9 N -0.73 -35.38 3.66 -322.93 -1.18 -36.56 16 10 C 0.17 6.71 2.76 44.99 0.12 6.83 16 11 H 0.02 1.02 8.08 -2.39 -0.02 1.00 16 12 C -0.12 -4.15 5.61 30.60 0.17 -3.98 16 13 C -0.11 -3.29 5.77 30.59 0.18 -3.12 16 14 C -0.10 -2.35 5.92 30.59 0.18 -2.17 16 15 C -0.12 -3.33 4.67 30.59 0.14 -3.19 16 16 C 0.16 5.20 2.98 44.99 0.13 5.33 16 17 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 18 N -0.36 -13.39 3.47 -327.49 -1.14 -14.53 16 19 C 0.07 2.52 9.54 83.54 0.80 3.32 16 20 C -0.30 -10.24 10.80 21.99 0.24 -10.00 16 21 C 0.04 1.27 12.03 85.24 1.03 2.30 16 22 N -0.34 -12.77 12.58 -57.02 -0.72 -13.49 16 23 H 0.24 14.67 6.77 -92.71 -0.63 14.04 16 24 H 0.36 17.95 3.94 -92.71 -0.37 17.58 16 25 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.38 7.60 -2.38 -0.02 1.36 16 29 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.73 5.52 -2.39 -0.01 1.71 16 33 H 0.16 6.04 6.84 -2.91 -0.02 6.02 16 34 H 0.16 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.21 5.07 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -68.40 279.85 4.45 -63.94 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.85 Total: 31.68 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 4.29 Total: -27.07 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -2.74 Total: -123.51 kcal Atomic # 14 Polarization: 52.90 SS G_CDS: 2.05 Total: 54.96 kcal Total: -68.40 4.45 -63.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128058874.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.201 kcal (2) G-P(sol) polarization free energy of solvation -68.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds