Wall clock time and date at job start Mon Mar 30 2020 03:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00545 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00295 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00006 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99568 * 359.71829 * 7 2 1 9 9 N 1.36929 * 120.00031 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47220 * 35.00144 * 10 9 7 12 12 C 1.52995 * 109.47213 * 274.99796 * 10 9 7 13 13 C 1.53006 * 109.47051 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46657 * 60.00298 * 13 12 10 15 15 C 1.53006 * 109.47504 * 299.99699 * 14 13 12 16 16 C 1.52996 * 109.46507 * 60.00109 * 15 14 13 17 17 H 1.08997 * 109.47387 * 60.00771 * 16 15 14 18 18 N 1.46507 * 109.46973 * 180.02562 * 16 15 14 19 19 C 1.34946 * 126.03671 * 34.71426 * 18 16 15 20 20 C 1.35315 * 107.74835 * 179.84302 * 19 18 16 21 21 C 1.39876 * 107.91612 * 0.42296 * 20 19 18 22 22 N 1.30832 * 108.20490 * 359.74106 * 21 20 19 23 23 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 24 24 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 25 25 H 1.08999 * 109.47559 * 299.99833 * 12 10 9 26 26 H 1.08999 * 109.46886 * 60.00602 * 12 10 9 27 27 H 1.08993 * 109.46916 * 179.97438 * 13 12 10 28 28 H 1.08991 * 109.47008 * 300.00663 * 13 12 10 29 29 H 1.08994 * 109.47767 * 60.00074 * 14 13 12 30 30 H 1.09002 * 109.46778 * 180.02562 * 14 13 12 31 31 H 1.08990 * 109.47350 * 180.02562 * 15 14 13 32 32 H 1.08997 * 109.46667 * 300.00439 * 15 14 13 33 33 H 1.08004 * 126.12611 * 359.97438 * 19 18 16 34 34 H 1.07998 * 126.04398 * 180.15814 * 20 19 18 35 35 H 1.08005 * 125.89604 * 179.75893 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 0.0036 9 7 3.3795 -1.2022 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5648 -3.2065 -0.5899 12 6 4.2576 -2.9759 1.4369 13 6 5.0220 -4.3013 1.4368 14 6 6.4094 -4.0897 0.8275 15 6 6.2639 -3.5848 -0.6095 16 6 5.4995 -2.2595 -0.6093 17 1 6.0470 -1.5243 -0.0196 18 7 5.3595 -1.7763 -1.9853 19 6 5.1925 -2.5433 -3.0829 20 6 5.1018 -1.7190 -4.1522 21 6 5.2271 -0.4036 -3.6933 22 7 5.3817 -0.4367 -2.3946 23 1 -0.4849 0.8401 0.0004 24 1 3.8646 -0.3622 0.0004 25 1 4.8048 -2.2406 2.0267 26 1 3.2691 -3.1270 1.8708 27 1 5.1261 -4.6607 2.4605 28 1 4.4745 -5.0364 0.8471 29 1 6.9570 -3.3546 1.4172 30 1 6.9538 -5.0341 0.8270 31 1 7.2522 -3.4346 -1.0436 32 1 5.7163 -4.3201 -1.1991 33 1 5.1386 -3.6218 -3.1039 34 1 4.9621 -2.0232 -5.1790 35 1 5.2005 0.4858 -4.3054 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128059362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:23 Heat of formation + Delta-G solvation = 81.333928 kcal Electronic energy + Delta-G solvation = -17210.059945 eV Core-core repulsion = 14630.707209 eV Total energy + Delta-G solvation = -2579.352735 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.82661 -38.29312 -34.17862 -32.62784 -31.35662 -29.59765 -29.12740 -27.79483 -23.55879 -23.02027 -21.14765 -20.73087 -20.28639 -19.28109 -17.66547 -16.87422 -15.27495 -14.62650 -14.48709 -14.09221 -13.97628 -13.62829 -13.27259 -12.98323 -12.61093 -12.39703 -12.35639 -12.11577 -11.41610 -11.09925 -11.06271 -10.88899 -10.62240 -10.43534 -10.19762 -10.09139 -9.98250 -9.55405 -8.95936 -8.84236 -8.10387 -7.23638 -5.73868 -3.08973 2.39789 2.93345 3.31277 3.45480 3.50788 3.54449 4.55423 4.65910 4.80826 4.96591 5.15705 5.17839 5.33741 5.38178 5.43508 5.54957 5.60162 5.65759 5.73935 5.85843 5.95955 5.99411 6.09744 6.20803 6.26859 6.30417 6.38708 6.41529 6.71252 6.85061 7.11015 7.50680 7.99899 8.20734 8.44480 9.23498 9.96649 10.15654 11.44181 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.011561 C = 0.008172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.767382 B = 2421.263094 C = 3425.661139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.008 3.992 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.088 0.912 9 N -0.741 5.741 10 C 0.176 3.824 11 H 0.058 0.942 12 C -0.135 4.135 13 C -0.122 4.122 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.149 3.851 17 H 0.095 0.905 18 N -0.345 5.345 19 C 0.054 3.946 20 C -0.281 4.281 21 C 0.034 3.966 22 N -0.286 5.286 23 H 0.259 0.741 24 H 0.366 0.634 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.165 0.835 34 H 0.139 0.861 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.380 -8.472 -2.561 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.188 4.188 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.106 0.894 9 N -0.383 5.383 10 C 0.065 3.935 11 H 0.076 0.924 12 C -0.176 4.176 13 C -0.160 4.160 14 C -0.150 4.150 15 C -0.162 4.162 16 C 0.047 3.953 17 H 0.113 0.887 18 N -0.126 5.126 19 C -0.093 4.093 20 C -0.311 4.311 21 C -0.152 4.152 22 N -0.107 5.107 23 H 0.069 0.931 24 H 0.200 0.800 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.182 0.818 34 H 0.157 0.843 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 14.288 -7.854 -1.378 16.362 hybrid contribution 0.243 0.772 -0.814 1.148 sum 14.531 -7.082 -2.192 16.313 Atomic orbital electron populations 1.69709 1.05108 1.25791 1.57577 1.24615 0.95161 0.97198 1.01799 0.86521 0.78975 0.84848 0.78050 1.20877 1.22037 1.20406 1.18984 0.80420 0.94559 1.43137 0.89433 1.42695 1.04024 1.01704 1.89912 1.20548 0.88924 0.90169 0.93832 0.92425 1.22246 1.00845 0.95379 0.99122 1.21604 0.95304 0.98600 1.00471 1.21486 0.97996 1.00957 0.94608 1.21865 1.00098 0.95604 0.98629 1.21779 0.99016 0.95996 0.78544 0.88681 1.48662 1.53879 1.03801 1.06213 1.22321 1.01902 0.98071 0.87006 1.21342 1.17798 0.92571 0.99415 1.23718 1.01051 0.98145 0.92268 1.77327 1.23377 0.96601 1.13430 0.93140 0.80029 0.92412 0.90780 0.92116 0.91975 0.91705 0.91527 0.91310 0.90924 0.81793 0.84276 0.80846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.09 13.97 55.49 0.78 -29.31 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 3 Si 0.89 23.71 27.74 -169.99 -4.71 19.00 16 4 H -0.28 -7.67 7.11 56.52 0.40 -7.26 16 5 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.28 -7.15 6.52 56.52 0.37 -6.78 16 7 C -0.24 -6.96 10.41 -15.06 -0.16 -7.12 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 9 N -0.74 -18.09 4.76 -53.42 -0.25 -18.34 16 10 C 0.18 3.35 2.43 -67.93 -0.16 3.18 16 11 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 12 C -0.13 -2.21 5.50 -26.73 -0.15 -2.36 16 13 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 14 C -0.11 -1.17 5.92 -26.73 -0.16 -1.33 16 15 C -0.12 -1.43 4.84 -26.73 -0.13 -1.56 16 16 C 0.15 2.40 2.73 -67.93 -0.19 2.22 16 17 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 18 N -0.34 -6.14 3.36 -54.86 -0.18 -6.33 16 19 C 0.05 0.85 10.59 -17.22 -0.18 0.66 16 20 C -0.28 -4.39 10.80 -40.01 -0.43 -4.83 16 21 C 0.03 0.59 12.03 -17.36 -0.21 0.38 16 22 N -0.29 -5.74 12.58 30.63 0.39 -5.36 16 23 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 24 H 0.37 9.25 5.66 -40.82 -0.23 9.01 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.79 7.15 -51.93 -0.37 0.42 16 33 H 0.16 1.98 7.25 -52.48 -0.38 1.60 16 34 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.17 2.49 8.06 -52.48 -0.42 2.06 16 LS Contribution 285.57 15.07 4.30 4.30 Total: -1.00 -33.87 285.57 -6.93 -40.80 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.22 Total: 7.47 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.02 Total: -12.24 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.72 Total: -59.34 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.71 Total: 19.00 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.87 -6.93 -40.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128059362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.135 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds