Wall clock time and date at job start Mon Mar 30 2020 03:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00545 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00295 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00006 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99568 * 359.71829 * 7 2 1 9 9 N 1.36929 * 120.00031 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47220 * 35.00144 * 10 9 7 12 12 C 1.52995 * 109.47213 * 274.99796 * 10 9 7 13 13 C 1.53006 * 109.47051 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46657 * 60.00298 * 13 12 10 15 15 C 1.53006 * 109.47504 * 299.99699 * 14 13 12 16 16 C 1.52996 * 109.46507 * 60.00109 * 15 14 13 17 17 H 1.08997 * 109.47387 * 60.00771 * 16 15 14 18 18 N 1.46507 * 109.46973 * 180.02562 * 16 15 14 19 19 C 1.34946 * 126.03671 * 34.71426 * 18 16 15 20 20 C 1.35315 * 107.74835 * 179.84302 * 19 18 16 21 21 C 1.39876 * 107.91612 * 0.42296 * 20 19 18 22 22 N 1.30832 * 108.20490 * 359.74106 * 21 20 19 23 23 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 24 24 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 25 25 H 1.08999 * 109.47559 * 299.99833 * 12 10 9 26 26 H 1.08999 * 109.46886 * 60.00602 * 12 10 9 27 27 H 1.08993 * 109.46916 * 179.97438 * 13 12 10 28 28 H 1.08991 * 109.47008 * 300.00663 * 13 12 10 29 29 H 1.08994 * 109.47767 * 60.00074 * 14 13 12 30 30 H 1.09002 * 109.46778 * 180.02562 * 14 13 12 31 31 H 1.08990 * 109.47350 * 180.02562 * 15 14 13 32 32 H 1.08997 * 109.46667 * 300.00439 * 15 14 13 33 33 H 1.08004 * 126.12611 * 359.97438 * 19 18 16 34 34 H 1.07998 * 126.04398 * 180.15814 * 20 19 18 35 35 H 1.08005 * 125.89604 * 179.75893 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 0.0036 9 7 3.3795 -1.2022 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5648 -3.2065 -0.5899 12 6 4.2576 -2.9759 1.4369 13 6 5.0220 -4.3013 1.4368 14 6 6.4094 -4.0897 0.8275 15 6 6.2639 -3.5848 -0.6095 16 6 5.4995 -2.2595 -0.6093 17 1 6.0470 -1.5243 -0.0196 18 7 5.3595 -1.7763 -1.9853 19 6 5.1925 -2.5433 -3.0829 20 6 5.1018 -1.7190 -4.1522 21 6 5.2271 -0.4036 -3.6933 22 7 5.3817 -0.4367 -2.3946 23 1 -0.4849 0.8401 0.0004 24 1 3.8646 -0.3622 0.0004 25 1 4.8048 -2.2406 2.0267 26 1 3.2691 -3.1270 1.8708 27 1 5.1261 -4.6607 2.4605 28 1 4.4745 -5.0364 0.8471 29 1 6.9570 -3.3546 1.4172 30 1 6.9538 -5.0341 0.8270 31 1 7.2522 -3.4346 -1.0436 32 1 5.7163 -4.3201 -1.1991 33 1 5.1386 -3.6218 -3.1039 34 1 4.9621 -2.0232 -5.1790 35 1 5.2005 0.4858 -4.3054 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128059362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:23 Heat of formation + Delta-G solvation = 58.583927 kcal Electronic energy + Delta-G solvation = -17211.046459 eV Core-core repulsion = 14630.707209 eV Total energy + Delta-G solvation = -2580.339249 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.08979 -39.56691 -36.01030 -33.87070 -33.36934 -30.86434 -30.49439 -29.21656 -25.44864 -24.19594 -22.61613 -22.03815 -21.51456 -20.61683 -19.59886 -18.18272 -16.92579 -16.39844 -15.75539 -15.46072 -15.19010 -14.98895 -14.66084 -14.60885 -14.24876 -13.72353 -13.62841 -13.38369 -13.11205 -12.98241 -12.45264 -12.26677 -12.11423 -11.89705 -11.73441 -11.51645 -11.39960 -11.25677 -11.02719 -10.23629 -9.42817 -9.28302 -8.08510 -5.38994 1.13281 1.28544 1.34182 1.38741 1.72341 2.06464 2.41591 3.23699 3.29499 3.69346 3.88707 3.97139 4.01666 4.15055 4.21783 4.28741 4.37832 4.48230 4.56635 4.73304 4.86920 4.90793 5.00528 5.09530 5.18419 5.21140 5.22975 5.30068 5.43760 5.54103 5.69736 5.87083 6.15647 6.31055 6.92148 7.02216 7.79627 7.96493 9.13140 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.011561 C = 0.008172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.767382 B = 2421.263094 C = 3425.661139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.057 4.057 3 Si 0.949 3.051 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.218 4.218 8 H 0.059 0.941 9 N -0.748 5.748 10 C 0.170 3.830 11 H 0.044 0.956 12 C -0.128 4.128 13 C -0.114 4.114 14 C -0.106 4.106 15 C -0.113 4.113 16 C 0.153 3.847 17 H 0.086 0.914 18 N -0.357 5.357 19 C 0.052 3.948 20 C -0.288 4.288 21 C 0.021 3.979 22 N -0.340 5.340 23 H 0.257 0.743 24 H 0.362 0.638 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.200 0.800 34 H 0.167 0.833 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.952 -9.963 -2.889 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.249 4.249 3 Si 0.778 3.222 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.189 1.189 7 C -0.349 4.349 8 H 0.077 0.923 9 N -0.390 5.390 10 C 0.061 3.939 11 H 0.062 0.938 12 C -0.169 4.169 13 C -0.152 4.152 14 C -0.144 4.144 15 C -0.152 4.152 16 C 0.050 3.950 17 H 0.104 0.896 18 N -0.138 5.138 19 C -0.095 4.095 20 C -0.317 4.317 21 C -0.164 4.164 22 N -0.162 5.162 23 H 0.066 0.934 24 H 0.195 0.805 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.217 0.783 34 H 0.185 0.815 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 16.918 -9.383 -1.698 19.420 hybrid contribution -0.562 1.124 -0.752 1.465 sum 16.356 -8.259 -2.450 18.486 Atomic orbital electron populations 1.69854 1.06712 1.26372 1.60239 1.25297 0.95920 1.00489 1.03164 0.85500 0.78215 0.80889 0.77628 1.21471 1.21939 1.18942 1.18959 0.82475 0.93199 1.40289 0.92315 1.42756 1.02493 1.03728 1.90016 1.20842 0.90179 0.87434 0.95485 0.93751 1.22089 1.00062 0.98092 0.96670 1.21559 0.95877 0.95639 1.02105 1.21498 0.96858 1.02697 0.93364 1.21887 1.00289 0.93008 1.00030 1.21820 0.97007 0.98241 0.77887 0.89596 1.48837 1.54436 1.03481 1.07088 1.22996 1.00454 0.99727 0.86300 1.21764 1.17225 0.91820 1.00924 1.24246 1.00219 0.99903 0.91985 1.77245 1.25632 0.98434 1.14896 0.93439 0.80471 0.92559 0.93824 0.90278 0.91466 0.91346 0.88179 0.89563 0.89625 0.78294 0.81539 0.78975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.05 13.97 21.65 0.30 -64.75 16 2 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 3 Si 0.95 50.16 27.74 68.60 1.90 52.06 16 4 H -0.29 -15.36 7.11 99.48 0.71 -14.65 16 5 H -0.29 -15.29 7.11 99.48 0.71 -14.59 16 6 H -0.26 -13.16 6.52 99.48 0.65 -12.51 16 7 C -0.22 -12.91 10.41 84.04 0.87 -12.03 16 8 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 9 N -0.75 -36.77 4.76 -322.93 -1.54 -38.31 16 10 C 0.17 6.35 2.43 44.99 0.11 6.45 16 11 H 0.04 1.77 8.08 -2.39 -0.02 1.75 16 12 C -0.13 -4.11 5.50 30.59 0.17 -3.95 16 13 C -0.11 -2.41 5.92 30.60 0.18 -2.23 16 14 C -0.11 -1.75 5.92 30.60 0.18 -1.57 16 15 C -0.11 -2.21 4.84 30.59 0.15 -2.06 16 16 C 0.15 4.65 2.73 44.99 0.12 4.77 16 17 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 18 N -0.36 -12.18 3.36 -327.48 -1.10 -13.28 16 19 C 0.05 1.49 10.59 83.54 0.88 2.38 16 20 C -0.29 -8.36 10.80 21.99 0.24 -8.12 16 21 C 0.02 0.72 12.03 85.24 1.03 1.75 16 22 N -0.34 -13.43 12.58 -57.02 -0.72 -14.15 16 23 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 24 H 0.36 18.30 5.66 -92.71 -0.52 17.78 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.48 7.15 -2.39 -0.02 1.46 16 33 H 0.20 4.03 7.25 -2.91 -0.02 4.01 16 34 H 0.17 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.19 5.32 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -75.75 285.57 3.73 -72.02 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.48 Total: 24.08 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 4.40 Total: -17.68 kcal Atomic # 7 Polarization: -127.44 SS G_CDS: -3.05 Total: -130.49 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 1.90 Total: 52.06 kcal Total: -75.75 3.73 -72.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128059362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.604 kcal (2) G-P(sol) polarization free energy of solvation -75.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds