Wall clock time and date at job start Mon Mar 30 2020 03:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47029 * 2 1 4 4 C 1.52991 * 109.47352 * 120.00749 * 2 1 3 5 5 O 1.42897 * 109.47330 * 54.51539 * 4 2 1 6 6 N 1.46504 * 109.46735 * 240.00730 * 2 1 3 7 7 C 1.36934 * 119.99944 * 305.86570 * 6 2 1 8 8 H 1.07993 * 120.00367 * 321.37440 * 7 6 2 9 9 C 1.38820 * 119.99541 * 141.36807 * 7 6 2 10 10 N 1.31619 * 120.00040 * 337.14544 * 9 7 6 11 11 Si 1.86801 * 119.99670 * 157.14484 * 9 7 6 12 12 H 1.48504 * 109.47059 * 60.00067 * 11 9 7 13 13 H 1.48498 * 109.46875 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46892 * 300.00003 * 11 9 7 15 15 C 1.46504 * 119.99869 * 125.87591 * 6 2 1 16 16 C 1.50695 * 109.47020 * 89.99760 * 15 6 2 17 17 C 1.38244 * 119.99836 * 269.72361 * 16 15 6 18 18 C 1.38234 * 119.99900 * 179.77236 * 17 16 15 19 19 C 1.38238 * 119.99872 * 0.50157 * 18 17 16 20 20 C 1.38231 * 120.00023 * 359.75001 * 19 18 17 21 21 C 1.38231 * 120.00351 * 89.99836 * 16 15 6 22 22 H 1.09001 * 109.47133 * 61.09454 * 1 2 3 23 23 H 1.08995 * 109.46930 * 181.09958 * 1 2 3 24 24 H 1.08997 * 109.46799 * 301.09510 * 1 2 3 25 25 H 1.09010 * 109.46675 * 294.51950 * 4 2 1 26 26 H 1.09000 * 109.47468 * 174.52534 * 4 2 1 27 27 H 0.96703 * 113.99785 * 179.97438 * 5 4 2 28 28 H 0.96995 * 119.99481 * 185.09523 * 10 9 7 29 29 H 1.09000 * 109.46613 * 209.99356 * 15 6 2 30 30 H 1.08996 * 109.46772 * 329.99459 * 15 6 2 31 31 H 1.07999 * 119.99978 * 0.02562 * 17 16 15 32 32 H 1.07997 * 119.99968 * 180.23621 * 18 17 16 33 33 H 1.07998 * 119.99724 * 179.73040 * 19 18 17 34 34 H 1.08001 * 119.99928 * 179.97438 * 20 19 18 35 35 H 1.07998 * 120.00015 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 8 1.4616 -2.0263 1.3151 6 7 2.0183 -0.6905 -1.1963 7 6 1.5914 -1.9613 -1.4755 8 1 1.4564 -2.6737 -0.6752 9 6 1.3320 -2.3337 -2.7874 10 7 1.0535 -1.4163 -3.6892 11 14 1.3783 -4.1370 -3.2729 12 1 0.3719 -4.8888 -2.4808 13 1 1.0690 -4.2682 -4.7194 14 1 2.7312 -4.6872 -3.0045 15 6 2.9634 -0.0214 -2.0938 16 6 4.3729 -0.3213 -1.6529 17 6 5.0066 0.5115 -0.7496 18 6 6.2978 0.2338 -0.3416 19 6 6.9591 -0.8709 -0.8448 20 6 6.3274 -1.7008 -1.7519 21 6 5.0343 -1.4260 -2.1560 22 1 -0.3633 0.4967 -0.8996 23 1 -0.3633 -1.0274 0.0197 24 1 -0.3633 0.5307 0.8800 25 1 1.7590 -0.1540 2.1364 26 1 3.1256 -0.8071 1.2014 27 1 1.7415 -2.5422 2.0837 28 1 0.8000 -1.6805 -4.5874 29 1 2.8163 -0.3832 -3.1114 30 1 2.7942 1.0548 -2.0627 31 1 4.4913 1.3769 -0.3596 32 1 6.7915 0.8823 0.3670 33 1 7.9695 -1.0854 -0.5293 34 1 6.8442 -2.5637 -2.1453 35 1 4.5410 -2.0740 -2.8654 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138482380.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:09 Heat of formation + Delta-G solvation = -4.895840 kcal Electronic energy + Delta-G solvation = -17246.326766 eV Core-core repulsion = 14630.942077 eV Total energy + Delta-G solvation = -2615.384690 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.59568 -36.98594 -34.80139 -31.82813 -31.34119 -30.20920 -28.63667 -25.55488 -25.29437 -22.98158 -21.83540 -20.44619 -19.43600 -16.89131 -16.34229 -15.83253 -14.95925 -14.45893 -14.21226 -14.06492 -13.68267 -13.32055 -12.83997 -12.73530 -12.36565 -11.97883 -11.70732 -11.26547 -11.09233 -10.78008 -10.67545 -10.56668 -10.37263 -10.24291 -9.87657 -9.81938 -9.72847 -9.08911 -8.35813 -8.26903 -7.95943 -6.42248 -5.71221 -3.19995 2.04527 2.08593 3.43514 3.48679 3.52184 4.43296 4.60817 5.13405 5.41129 5.45921 5.50849 5.52010 5.63441 5.90698 6.02462 6.07620 6.12820 6.20536 6.28046 6.37524 6.51752 6.68231 6.70595 6.76874 6.82181 7.08013 7.10031 7.18303 7.42866 7.49040 7.65760 7.76369 8.13697 8.41471 8.71628 9.32681 9.91547 10.50691 11.33467 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.012039 C = 0.008998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.855312 B = 2325.122114 C = 3111.007374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.169 3.831 3 H 0.055 0.945 4 C 0.070 3.930 5 O -0.543 6.543 6 N -0.565 5.565 7 C -0.236 4.236 8 H 0.083 0.917 9 C 0.007 3.993 10 N -0.895 5.895 11 Si 0.890 3.110 12 H -0.282 1.282 13 H -0.293 1.293 14 H -0.284 1.284 15 C 0.174 3.826 16 C -0.068 4.068 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.146 4.146 20 C -0.127 4.127 21 C -0.098 4.098 22 H 0.048 0.952 23 H 0.068 0.932 24 H 0.026 0.974 25 H 0.021 0.979 26 H 0.034 0.966 27 H 0.351 0.649 28 H 0.253 0.747 29 H 0.100 0.900 30 H 0.032 0.968 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.671 2.859 6.700 9.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.062 3.938 3 H 0.073 0.927 4 C -0.010 4.010 5 O -0.345 6.345 6 N -0.283 5.283 7 C -0.366 4.366 8 H 0.100 0.900 9 C -0.192 4.192 10 N -0.538 5.538 11 Si 0.721 3.279 12 H -0.208 1.208 13 H -0.220 1.220 14 H -0.210 1.210 15 C 0.048 3.952 16 C -0.071 4.071 17 C -0.145 4.145 18 C -0.148 4.148 19 C -0.164 4.164 20 C -0.145 4.145 21 C -0.117 4.117 22 H 0.067 0.933 23 H 0.087 0.913 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.195 0.805 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.051 0.949 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.337 3.066 5.916 9.196 hybrid contribution 0.406 -1.167 0.313 1.274 sum 6.744 1.899 6.230 9.375 Atomic orbital electron populations 1.21913 0.96874 1.02451 0.98603 1.20482 0.93513 0.92838 0.86959 0.92663 1.22880 0.96181 0.84106 0.97856 1.86821 1.71748 1.27583 1.48398 1.43799 1.45631 1.15043 1.23869 1.19372 1.38288 0.87067 0.91831 0.89972 1.25225 0.99325 0.96704 0.97952 1.69943 1.47467 1.31823 1.04573 0.86549 0.78249 0.86206 0.76932 1.20822 1.21951 1.21034 1.20051 0.82479 0.94431 0.98251 1.21287 0.97847 0.93513 0.94471 1.21007 0.94748 0.99948 0.98751 1.20959 0.95510 0.97808 1.00559 1.20869 0.99423 0.96540 0.99603 1.21087 0.95709 0.99243 0.98497 1.21114 0.93608 0.97085 0.99906 0.93284 0.91341 0.95526 0.96123 0.94738 0.80501 0.93672 0.88253 0.94930 0.87313 0.87433 0.87463 0.87267 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.86 37.16 0.33 -2.60 16 2 C 0.17 3.54 3.29 -67.93 -0.22 3.31 16 3 H 0.06 1.06 7.76 -51.93 -0.40 0.66 16 4 C 0.07 1.30 6.82 37.15 0.25 1.55 16 5 O -0.54 -10.61 10.14 -35.23 -0.36 -10.97 16 6 N -0.56 -13.56 2.34 -167.02 -0.39 -13.96 16 7 C -0.24 -6.30 7.86 -15.06 -0.12 -6.41 16 8 H 0.08 2.29 5.75 -52.49 -0.30 1.99 16 9 C 0.01 0.19 4.90 -17.43 -0.09 0.10 16 10 N -0.89 -25.39 11.64 55.49 0.65 -24.75 16 11 Si 0.89 21.86 29.61 -169.99 -5.03 16.82 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.17 4.00 5.41 -5.19 -0.03 3.97 16 16 C -0.07 -1.40 5.46 -104.62 -0.57 -1.97 16 17 C -0.13 -2.25 9.70 -39.58 -0.38 -2.64 16 18 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 19 C -0.15 -2.33 10.05 -39.58 -0.40 -2.73 16 20 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 21 C -0.10 -2.01 9.70 -39.58 -0.38 -2.40 16 22 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.07 1.60 6.95 -51.93 -0.36 1.24 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.35 5.10 9.12 45.56 0.42 5.51 16 28 H 0.25 7.04 8.32 -40.82 -0.34 6.70 16 29 H 0.10 2.59 5.60 -51.93 -0.29 2.30 16 30 H 0.03 0.71 7.82 -51.93 -0.41 0.30 16 31 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 291.39 15.07 4.39 4.39 Total: -1.00 -29.52 291.39 -7.44 -36.96 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.29 Total: 6.43 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -2.40 Total: -14.93 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.26 Total: -38.70 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.36 Total: -10.97 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.52 -7.44 -36.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138482380.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.060 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds