Wall clock time and date at job start Mon Mar 30 2020 03:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47029 * 2 1 4 4 C 1.52991 * 109.47352 * 120.00749 * 2 1 3 5 5 O 1.42897 * 109.47330 * 54.51539 * 4 2 1 6 6 N 1.46504 * 109.46735 * 240.00730 * 2 1 3 7 7 C 1.36934 * 119.99944 * 305.86570 * 6 2 1 8 8 H 1.07993 * 120.00367 * 321.37440 * 7 6 2 9 9 C 1.38820 * 119.99541 * 141.36807 * 7 6 2 10 10 N 1.31619 * 120.00040 * 337.14544 * 9 7 6 11 11 Si 1.86801 * 119.99670 * 157.14484 * 9 7 6 12 12 H 1.48504 * 109.47059 * 60.00067 * 11 9 7 13 13 H 1.48498 * 109.46875 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46892 * 300.00003 * 11 9 7 15 15 C 1.46504 * 119.99869 * 125.87591 * 6 2 1 16 16 C 1.50695 * 109.47020 * 89.99760 * 15 6 2 17 17 C 1.38244 * 119.99836 * 269.72361 * 16 15 6 18 18 C 1.38234 * 119.99900 * 179.77236 * 17 16 15 19 19 C 1.38238 * 119.99872 * 0.50157 * 18 17 16 20 20 C 1.38231 * 120.00023 * 359.75001 * 19 18 17 21 21 C 1.38231 * 120.00351 * 89.99836 * 16 15 6 22 22 H 1.09001 * 109.47133 * 61.09454 * 1 2 3 23 23 H 1.08995 * 109.46930 * 181.09958 * 1 2 3 24 24 H 1.08997 * 109.46799 * 301.09510 * 1 2 3 25 25 H 1.09010 * 109.46675 * 294.51950 * 4 2 1 26 26 H 1.09000 * 109.47468 * 174.52534 * 4 2 1 27 27 H 0.96703 * 113.99785 * 179.97438 * 5 4 2 28 28 H 0.96995 * 119.99481 * 185.09523 * 10 9 7 29 29 H 1.09000 * 109.46613 * 209.99356 * 15 6 2 30 30 H 1.08996 * 109.46772 * 329.99459 * 15 6 2 31 31 H 1.07999 * 119.99978 * 0.02562 * 17 16 15 32 32 H 1.07997 * 119.99968 * 180.23621 * 18 17 16 33 33 H 1.07998 * 119.99724 * 179.73040 * 19 18 17 34 34 H 1.08001 * 119.99928 * 179.97438 * 20 19 18 35 35 H 1.07998 * 120.00015 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 8 1.4616 -2.0263 1.3151 6 7 2.0183 -0.6905 -1.1963 7 6 1.5914 -1.9613 -1.4755 8 1 1.4564 -2.6737 -0.6752 9 6 1.3320 -2.3337 -2.7874 10 7 1.0535 -1.4163 -3.6892 11 14 1.3783 -4.1370 -3.2729 12 1 0.3719 -4.8888 -2.4808 13 1 1.0690 -4.2682 -4.7194 14 1 2.7312 -4.6872 -3.0045 15 6 2.9634 -0.0214 -2.0938 16 6 4.3729 -0.3213 -1.6529 17 6 5.0066 0.5115 -0.7496 18 6 6.2978 0.2338 -0.3416 19 6 6.9591 -0.8709 -0.8448 20 6 6.3274 -1.7008 -1.7519 21 6 5.0343 -1.4260 -2.1560 22 1 -0.3633 0.4967 -0.8996 23 1 -0.3633 -1.0274 0.0197 24 1 -0.3633 0.5307 0.8800 25 1 1.7590 -0.1540 2.1364 26 1 3.1256 -0.8071 1.2014 27 1 1.7415 -2.5422 2.0837 28 1 0.8000 -1.6805 -4.5874 29 1 2.8163 -0.3832 -3.1114 30 1 2.7942 1.0548 -2.0627 31 1 4.4913 1.3769 -0.3596 32 1 6.7915 0.8823 0.3670 33 1 7.9695 -1.0854 -0.5293 34 1 6.8442 -2.5637 -2.1453 35 1 4.5410 -2.0740 -2.8654 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138482380.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:09 Heat of formation + Delta-G solvation = -23.088624 kcal Electronic energy + Delta-G solvation = -17247.115665 eV Core-core repulsion = 14630.942077 eV Total energy + Delta-G solvation = -2616.173588 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05946 -38.56433 -36.45548 -33.72170 -32.92657 -31.59389 -30.36502 -27.33133 -26.93651 -24.74970 -23.23382 -21.93035 -21.18975 -18.53661 -17.98566 -17.35127 -16.74557 -16.01735 -15.87859 -15.60404 -15.38165 -14.98627 -14.52899 -14.13176 -13.84562 -13.43681 -13.37752 -13.00662 -12.96394 -12.70678 -12.32565 -12.20794 -12.10094 -11.93749 -11.65985 -11.53419 -11.41131 -10.60183 -10.38012 -9.65185 -9.40700 -8.36809 -7.74761 -5.26661 0.65998 0.68640 1.43968 1.46060 1.51976 2.55705 3.04387 3.35602 3.72763 3.85439 4.15335 4.25115 4.32916 4.42218 4.44898 4.56306 4.68118 4.69018 4.79581 4.84860 4.98242 5.08087 5.10656 5.30522 5.33459 5.42921 5.61917 5.72881 5.73974 5.79620 6.01680 6.08971 6.32872 6.71228 7.14967 7.33593 7.98118 8.51691 9.25748 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.012039 C = 0.008998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.855312 B = 2325.122114 C = 3111.007374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.157 3.843 3 H 0.074 0.926 4 C 0.079 3.921 5 O -0.570 6.570 6 N -0.578 5.578 7 C -0.224 4.224 8 H 0.072 0.928 9 C -0.041 4.041 10 N -0.925 5.925 11 Si 0.938 3.062 12 H -0.281 1.281 13 H -0.297 1.297 14 H -0.283 1.283 15 C 0.179 3.821 16 C -0.087 4.087 17 C -0.128 4.128 18 C -0.121 4.121 19 C -0.136 4.136 20 C -0.131 4.131 21 C -0.127 4.127 22 H 0.024 0.976 23 H 0.038 0.962 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.029 0.971 27 H 0.374 0.626 28 H 0.246 0.754 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.124 0.876 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.128 0.872 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.760 3.521 9.209 13.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.051 3.949 3 H 0.092 0.908 4 C 0.000 4.000 5 O -0.376 6.376 6 N -0.297 5.297 7 C -0.354 4.354 8 H 0.089 0.911 9 C -0.236 4.236 10 N -0.571 5.571 11 Si 0.768 3.232 12 H -0.207 1.207 13 H -0.224 1.224 14 H -0.210 1.210 15 C 0.053 3.947 16 C -0.090 4.090 17 C -0.146 4.146 18 C -0.139 4.139 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.146 4.146 22 H 0.043 0.957 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.221 0.779 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.142 0.858 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.146 0.854 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.445 3.722 8.462 12.521 hybrid contribution -0.159 -1.312 -0.369 1.372 sum 8.286 2.410 8.093 11.830 Atomic orbital electron populations 1.21792 0.97216 1.00665 0.99094 1.20769 0.93295 0.94034 0.86782 0.90810 1.22690 0.95557 0.84029 0.97744 1.86749 1.72178 1.28429 1.50226 1.43952 1.46523 1.14502 1.24772 1.19388 1.36520 0.88197 0.91332 0.91112 1.25723 1.00368 0.99260 0.98281 1.70059 1.49689 1.32909 1.04403 0.85787 0.77984 0.83198 0.76240 1.20676 1.22376 1.20982 1.19815 0.84345 0.94133 0.96375 1.20990 0.96833 0.94809 0.96369 1.21163 0.95782 0.99799 0.97882 1.21395 0.94449 0.97912 1.00144 1.21327 1.00841 0.95436 0.97812 1.21316 0.94481 1.00327 0.98783 1.21011 0.95362 0.97432 1.00764 0.95695 0.94276 0.91905 0.92465 0.95269 0.77947 0.94472 0.92096 0.94530 0.85789 0.83522 0.83626 0.85388 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.86 71.98 0.64 -4.69 16 2 C 0.16 6.39 3.29 44.99 0.15 6.54 16 3 H 0.07 2.69 7.76 -2.38 -0.02 2.67 16 4 C 0.08 2.75 6.82 71.98 0.49 3.24 16 5 O -0.57 -21.40 10.14 -148.98 -1.51 -22.91 16 6 N -0.58 -28.13 2.34 -682.34 -1.60 -29.73 16 7 C -0.22 -12.24 7.86 84.04 0.66 -11.58 16 8 H 0.07 4.02 5.75 -2.91 -0.02 4.00 16 9 C -0.04 -2.31 4.90 84.86 0.42 -1.89 16 10 N -0.92 -55.03 11.64 21.65 0.25 -54.78 16 11 Si 0.94 46.54 29.61 68.60 2.03 48.58 16 12 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 13 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 14 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 15 C 0.18 8.48 5.41 85.63 0.46 8.94 16 16 C -0.09 -3.59 5.46 -19.87 -0.11 -3.70 16 17 C -0.13 -4.24 9.70 22.27 0.22 -4.03 16 18 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 19 C -0.14 -3.76 10.05 22.27 0.22 -3.54 16 20 C -0.13 -4.36 10.05 22.27 0.22 -4.14 16 21 C -0.13 -5.25 9.70 22.27 0.22 -5.04 16 22 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.04 1.82 6.95 -2.39 -0.02 1.80 16 24 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.37 10.05 9.12 -74.06 -0.68 9.38 16 28 H 0.25 14.39 8.32 -92.71 -0.77 13.62 16 29 H 0.06 3.37 5.60 -2.39 -0.01 3.36 16 30 H 0.04 1.63 7.82 -2.39 -0.02 1.61 16 31 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 33 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.09 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -66.10 291.39 3.39 -62.72 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.40 Total: 19.11 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 3.81 Total: -22.99 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.34 Total: -84.51 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -1.51 Total: -22.91 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.58 kcal Total: -66.10 3.39 -62.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138482380.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.627 kcal (2) G-P(sol) polarization free energy of solvation -66.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds