Wall clock time and date at job start Mon Mar 30 2020 03:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32276 * 119.90384 * 2 1 4 4 C 1.31917 * 120.08513 * 179.97438 * 3 2 1 5 5 C 1.39339 * 119.89156 * 0.02562 * 4 3 2 6 6 N 1.38999 * 120.09248 * 180.27149 * 5 4 3 7 7 C 1.46502 * 119.99792 * 191.35308 * 6 5 4 8 8 C 1.46503 * 120.00430 * 11.36050 * 6 5 4 9 9 H 1.09008 * 109.46736 * 4.86441 * 8 6 5 10 10 C 1.52998 * 109.47391 * 124.86373 * 8 6 5 11 11 C 1.50693 * 109.47033 * 244.86684 * 8 6 5 12 12 H 1.08005 * 120.00552 * 359.97438 * 11 8 6 13 13 C 1.37875 * 120.00232 * 180.02562 * 11 8 6 14 14 N 1.31513 * 120.00342 * 180.02562 * 13 11 8 15 15 Si 1.86806 * 119.99870 * 359.97438 * 13 11 8 16 16 H 1.48502 * 109.46674 * 90.00203 * 15 13 11 17 17 H 1.48499 * 109.47338 * 210.00376 * 15 13 11 18 18 H 1.48505 * 109.46858 * 330.00634 * 15 13 11 19 19 N 1.32653 * 119.80917 * 0.02562 * 5 4 3 20 20 C 1.32249 * 119.91206 * 359.97438 * 19 5 4 21 21 C 1.50694 * 119.94450 * 180.02562 * 20 19 5 22 22 H 1.09001 * 109.47086 * 270.02323 * 1 2 3 23 23 H 1.09003 * 109.47576 * 30.02297 * 1 2 3 24 24 H 1.08999 * 109.47271 * 150.02372 * 1 2 3 25 25 H 1.08005 * 120.05332 * 180.02562 * 4 3 2 26 26 H 1.08998 * 109.47012 * 90.00236 * 7 6 5 27 27 H 1.09000 * 109.46974 * 209.99920 * 7 6 5 28 28 H 1.08997 * 109.47449 * 330.00693 * 7 6 5 29 29 H 1.08999 * 109.46820 * 180.02562 * 10 8 6 30 30 H 1.09004 * 109.46935 * 300.00174 * 10 8 6 31 31 H 1.08999 * 109.46993 * 60.00166 * 10 8 6 32 32 H 0.96998 * 119.99997 * 179.97438 * 14 13 11 33 33 H 1.08991 * 109.47555 * 90.00137 * 21 20 19 34 34 H 1.09002 * 109.47255 * 210.00366 * 21 20 19 35 35 H 1.09000 * 109.47032 * 329.99448 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1664 1.1467 0.0000 4 6 3.4856 1.1508 0.0005 5 6 4.1838 -0.0550 0.0005 6 7 5.5738 -0.0555 0.0067 7 6 6.3069 -1.2990 -0.2430 8 6 6.3057 1.1874 0.2632 9 1 5.5997 1.9804 0.5104 10 6 7.2695 0.9797 1.4331 11 6 7.0851 1.5744 -0.9671 12 1 7.0402 0.9561 -1.8516 13 6 7.8564 2.7172 -0.9635 14 7 8.5362 3.0551 -2.0374 15 14 7.9348 3.7863 0.5663 16 1 9.0505 3.3290 1.4330 17 1 8.1619 5.1997 0.1714 18 1 6.6541 3.6799 1.3107 19 7 3.5182 -1.2024 -0.0005 20 6 2.1957 -1.1977 -0.0010 21 6 1.4388 -2.5008 -0.0016 22 1 -0.3633 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 4.0235 2.0874 0.0009 26 1 6.4934 -1.4025 -1.3119 27 1 7.2570 -1.2741 0.2908 28 1 5.7159 -2.1457 0.1063 29 1 7.8136 1.9047 1.6241 30 1 6.7056 0.6999 2.3230 31 1 7.9754 0.1869 1.1860 32 1 9.0786 3.8593 -2.0349 33 1 1.2558 -2.8152 1.0258 34 1 0.4869 -2.3678 -0.5158 35 1 2.0260 -3.2618 -0.5155 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164604594.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:56 Heat of formation + Delta-G solvation = 40.284100 kcal Electronic energy + Delta-G solvation = -16755.125587 eV Core-core repulsion = 14173.992797 eV Total energy + Delta-G solvation = -2581.132789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.03944 -38.74201 -35.56127 -35.04028 -33.93542 -31.90666 -29.46618 -29.13036 -27.21945 -26.07386 -24.02000 -23.56996 -21.24809 -19.12815 -18.56611 -18.12877 -16.98293 -16.45469 -16.25470 -15.43178 -15.20086 -14.84619 -14.55732 -14.08194 -13.79184 -13.77324 -13.71862 -13.49677 -13.37307 -13.07157 -13.01418 -12.50641 -12.45303 -12.15380 -12.08621 -11.83203 -11.53440 -11.43471 -10.81956 -10.48488 -9.93256 -8.38899 -8.34568 -6.43306 0.07376 0.39954 1.28895 1.35612 1.44634 2.01847 2.26021 2.83460 2.97891 3.39457 3.42971 3.64391 4.11425 4.14700 4.25865 4.41841 4.54097 4.59150 4.62365 4.68430 4.72777 4.79423 4.88173 4.92216 4.94171 5.11618 5.12560 5.15795 5.28519 5.44249 5.64284 5.88024 6.22685 6.44596 6.60893 6.73061 7.07261 7.23866 8.80579 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035464 B = 0.007119 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.334683 B = 3932.155021 C = 4261.889269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.022 4.022 3 N -0.421 5.421 4 C -0.041 4.041 5 C 0.350 3.650 6 N -0.584 5.584 7 C 0.109 3.891 8 C 0.245 3.755 9 H 0.048 0.952 10 C -0.158 4.158 11 C -0.531 4.531 12 H 0.033 0.967 13 C 0.022 3.978 14 N -0.941 5.941 15 Si 0.944 3.056 16 H -0.257 1.257 17 H -0.296 1.296 18 H -0.246 1.246 19 N -0.523 5.523 20 C 0.127 3.873 21 C -0.096 4.096 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.154 0.846 26 H 0.027 0.973 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.269 0.731 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.260 -8.994 7.986 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.165 4.165 3 N -0.135 5.135 4 C -0.209 4.209 5 C 0.112 3.888 6 N -0.293 5.293 7 C -0.034 4.034 8 C 0.141 3.859 9 H 0.065 0.935 10 C -0.216 4.216 11 C -0.570 4.570 12 H 0.051 0.949 13 C -0.177 4.177 14 N -0.580 5.580 15 Si 0.770 3.230 16 H -0.183 1.183 17 H -0.223 1.223 18 H -0.170 1.170 19 N -0.248 5.248 20 C -0.016 4.016 21 C -0.153 4.153 22 H 0.105 0.895 23 H 0.085 0.915 24 H 0.122 0.878 25 H 0.171 0.829 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.894 -8.868 7.904 17.532 hybrid contribution 0.997 0.976 -0.070 1.397 sum -11.897 -7.892 7.834 16.285 Atomic orbital electron populations 1.20654 0.85238 1.04272 1.03832 1.22352 0.99893 0.88446 1.05787 1.68024 1.07616 1.30778 1.07070 1.23057 0.90781 0.98018 1.09020 1.19482 0.86652 0.90801 0.91867 1.46612 1.00193 1.10474 1.72068 1.21445 0.96819 0.85519 0.99628 1.19163 0.90847 0.82278 0.93573 0.93469 1.22383 0.99957 1.01530 0.97738 1.21364 1.27935 1.09118 0.98585 0.94867 1.25740 0.94200 0.98395 0.99321 1.70022 1.30878 1.26340 1.30767 0.85936 0.80511 0.77052 0.79518 1.18307 1.22325 1.16956 1.67851 1.09566 1.27401 1.19939 1.22569 0.88751 0.98412 0.91909 1.20906 0.99661 0.90061 1.04715 0.89513 0.91468 0.87773 0.82922 0.95413 0.90623 0.90017 0.93214 0.92095 0.91607 0.92169 0.88250 0.87153 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 9.78 71.23 0.70 -0.88 16 2 C -0.02 -0.67 6.78 42.47 0.29 -0.38 16 3 N -0.42 -15.86 10.41 -182.75 -1.90 -17.76 16 4 C -0.04 -1.71 10.39 84.95 0.88 -0.83 16 5 C 0.35 14.45 7.33 133.04 0.97 15.43 16 6 N -0.58 -24.85 2.87 -708.44 -2.03 -26.88 16 7 C 0.11 4.09 10.03 127.77 1.28 5.37 16 8 C 0.24 11.17 2.09 44.24 0.09 11.26 16 9 H 0.05 2.19 4.59 -2.38 -0.01 2.18 16 10 C -0.16 -6.27 8.55 71.98 0.62 -5.66 16 11 C -0.53 -29.49 9.03 25.60 0.23 -29.26 16 12 H 0.03 2.10 8.04 -2.91 -0.02 2.08 16 13 C 0.02 1.26 5.45 84.65 0.46 1.72 16 14 N -0.94 -57.39 13.96 21.45 0.30 -57.09 16 15 Si 0.94 42.56 24.37 68.60 1.67 44.23 16 16 H -0.26 -10.83 6.87 99.48 0.68 -10.14 16 17 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 18 H -0.25 -10.23 6.53 99.48 0.65 -9.58 16 19 N -0.52 -19.13 9.18 -180.75 -1.66 -20.79 16 20 C 0.13 3.75 6.78 42.48 0.29 4.03 16 21 C -0.10 -1.70 9.78 71.23 0.70 -1.01 16 22 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 23 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 24 H 0.10 1.31 5.93 -2.39 -0.01 1.30 16 25 H 0.15 6.59 6.00 -2.91 -0.02 6.58 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 2.65 6.18 -2.39 -0.01 2.63 16 28 H 0.08 2.75 7.26 -2.39 -0.02 2.73 16 29 H 0.05 2.00 3.27 -2.39 -0.01 1.99 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 2.51 6.52 -2.39 -0.02 2.50 16 32 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 1.28 5.93 -2.39 -0.01 1.27 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -68.40 278.16 3.90 -64.50 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 1.02 Total: 14.00 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 6.51 Total: -0.21 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -5.29 Total: -122.52 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.67 Total: 44.23 kcal Total: -68.40 3.90 -64.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164604594.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.783 kcal (2) G-P(sol) polarization free energy of solvation -68.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds