Wall clock time and date at job start Mon Mar 30 2020 03:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30767 * 1 3 3 Si 1.86799 * 119.99932 * 2 1 4 4 H 1.48504 * 109.47149 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47287 * 119.99732 * 3 2 1 6 6 H 1.48500 * 109.47038 * 240.00240 * 3 2 1 7 7 C 1.40141 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00058 * 155.51961 * 7 2 1 9 9 C 1.40374 * 120.00207 * 335.51406 * 7 2 1 10 10 C 1.39871 * 127.47305 * 343.50557 * 9 7 2 11 11 N 1.33062 * 105.94361 * 179.84753 * 10 9 7 12 12 N 1.28389 * 109.79260 * 0.43172 * 11 10 9 13 13 N 1.28655 * 111.33062 * 359.72289 * 12 11 10 14 14 C 1.46507 * 126.05850 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.46985 * 269.99692 * 14 13 12 16 16 C 1.52995 * 109.47318 * 295.00219 * 15 14 13 17 17 C 1.53002 * 109.47275 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47335 * 60.00012 * 17 16 15 19 19 C 1.53004 * 109.46589 * 299.99937 * 18 17 16 20 20 C 1.53001 * 109.47284 * 60.00386 * 19 18 17 21 21 H 0.97003 * 120.00049 * 174.20893 * 1 2 3 22 22 H 1.07994 * 127.02946 * 359.97438 * 10 9 7 23 23 H 1.08996 * 109.47087 * 29.99781 * 14 13 12 24 24 H 1.09002 * 109.46574 * 149.99631 * 14 13 12 25 25 H 1.09001 * 109.47468 * 55.00123 * 15 14 13 26 26 H 1.09002 * 109.47466 * 300.00054 * 16 15 14 27 27 H 1.09004 * 109.47461 * 59.99876 * 16 15 14 28 28 H 1.09001 * 109.47230 * 299.99732 * 17 16 15 29 29 H 1.09001 * 109.47484 * 180.02562 * 17 16 15 30 30 H 1.09003 * 109.47023 * 180.02562 * 18 17 16 31 31 H 1.08996 * 109.47372 * 60.00152 * 18 17 16 32 32 H 1.09001 * 109.47157 * 299.99779 * 19 18 17 33 33 H 1.09000 * 109.46666 * 180.02562 * 19 18 17 34 34 H 1.08997 * 109.47165 * 179.97438 * 20 19 18 35 35 H 1.08996 * 109.47055 * 59.99553 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 1.2766 2.7465 -0.0006 5 1 3.0953 1.6965 1.2125 6 1 3.0953 1.6964 -1.2125 7 6 2.0083 -1.2137 0.0005 8 1 3.0155 -1.2560 -0.3870 9 6 1.4011 -2.3745 0.5049 10 6 0.2658 -2.4565 1.3178 11 7 0.0659 -3.7537 1.5367 12 7 0.9738 -4.4398 0.9422 13 7 1.7977 -3.6791 0.3116 14 6 2.9531 -4.1221 -0.4727 15 6 4.1845 -4.1982 0.4319 16 6 4.5434 -2.7947 0.9240 17 6 5.7754 -2.8707 1.8281 18 6 6.9514 -3.4510 1.0401 19 6 6.5924 -4.8547 0.5482 20 6 5.3606 -4.7787 -0.3561 21 1 -0.4850 -0.8358 -0.0848 22 1 -0.3284 -1.6350 1.6899 23 1 2.7503 -5.1067 -0.8939 24 1 3.1380 -3.4129 -1.2794 25 1 3.9683 -4.8387 1.2870 26 1 4.7598 -2.1541 0.0689 27 1 3.7055 -2.3809 1.4850 28 1 5.5595 -3.5112 2.6832 29 1 6.0308 -1.8708 2.1791 30 1 7.8289 -3.5056 1.6844 31 1 7.1673 -2.8105 0.1851 32 1 6.3766 -5.4952 1.4033 33 1 7.4304 -5.2683 -0.0129 34 1 5.1051 -5.7785 -0.7069 35 1 5.5765 -4.1381 -1.2111 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214555184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:32 Heat of formation + Delta-G solvation = 44.172212 kcal Electronic energy + Delta-G solvation = -17171.863570 eV Core-core repulsion = 14590.899382 eV Total energy + Delta-G solvation = -2580.964188 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05865 -38.39744 -34.24275 -33.76122 -30.72944 -30.25933 -29.10727 -26.07743 -25.04496 -22.43812 -21.55385 -20.77641 -19.88978 -19.43417 -17.73777 -15.56713 -15.53134 -14.51427 -14.27562 -14.11901 -13.96867 -13.74563 -13.53754 -12.85742 -12.45990 -12.06290 -11.96155 -11.65797 -11.36512 -11.20542 -10.94445 -10.79970 -10.48054 -10.46886 -10.22051 -10.02374 -9.83215 -9.79102 -9.16381 -9.10692 -8.52567 -7.71545 -7.29977 -4.60104 2.94257 3.11653 3.30772 3.44218 3.84162 4.03132 4.22121 4.82042 4.87903 4.94136 4.99137 5.26378 5.42361 5.54664 5.61430 5.68272 5.71019 5.77183 5.81071 5.99369 6.06825 6.15990 6.29767 6.30883 6.34742 6.46686 6.49667 6.73025 6.84049 6.89907 7.34046 7.41057 7.80173 7.88378 8.13508 8.53871 8.79907 10.00752 10.42099 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021301 B = 0.009989 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.179282 B = 2802.339501 C = 3758.371098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.048 3.952 3 Si 1.070 2.930 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.083 0.917 9 C 0.183 3.817 10 C -0.204 4.204 11 N -0.267 5.267 12 N -0.198 5.198 13 N -0.368 5.368 14 C 0.148 3.852 15 C -0.100 4.100 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.111 4.111 21 H 0.303 0.697 22 H 0.160 0.840 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.716 -1.718 -1.812 12.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.176 4.176 3 Si 0.893 3.107 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.101 0.899 9 C 0.060 3.940 10 C -0.366 4.366 11 N -0.133 5.133 12 N -0.173 5.173 13 N -0.164 5.164 14 C 0.024 3.976 15 C -0.120 4.120 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.149 4.149 21 H 0.117 0.883 22 H 0.178 0.822 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.074 -1.668 -1.401 12.269 hybrid contribution 0.528 -0.556 -0.405 0.867 sum 12.602 -2.224 -1.805 12.924 Atomic orbital electron populations 1.70388 1.08275 1.34761 1.28457 1.26925 0.95575 1.03762 0.91372 0.83558 0.75544 0.73640 0.77954 1.19728 1.19869 1.20169 1.19591 1.02723 0.92050 1.40548 0.89933 1.19835 0.94060 0.84488 0.95587 1.23345 1.05898 0.93948 1.13425 1.73947 1.17420 1.04945 1.17029 1.77494 1.02231 1.20247 1.17357 1.46964 1.23219 1.04924 1.41299 1.21397 0.82688 1.00551 0.92930 1.21556 0.93702 0.98057 0.98639 1.21735 0.98032 0.95758 0.99806 1.21536 0.95229 1.00512 0.98318 1.21544 0.97756 0.96473 0.99816 1.21491 0.97339 0.97160 0.99347 1.21514 0.94516 1.00632 0.98232 0.88304 0.82240 0.90290 0.89736 0.90975 0.91765 0.90150 0.92547 0.92159 0.92601 0.92078 0.92207 0.92333 0.92071 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.56 12.68 55.56 0.70 -19.85 16 2 C 0.05 1.16 5.28 -17.29 -0.09 1.07 16 3 Si 1.07 20.48 30.00 -169.99 -5.10 15.38 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.28 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.51 -12.56 7.68 -38.06 -0.29 -12.86 16 8 H 0.08 1.89 5.86 -52.48 -0.31 1.58 16 9 C 0.18 4.75 5.28 -83.81 -0.44 4.31 16 10 C -0.20 -5.62 10.18 -16.41 -0.17 -5.79 16 11 N -0.27 -7.46 12.31 31.00 0.38 -7.08 16 12 N -0.20 -5.26 13.09 60.35 0.79 -4.47 16 13 N -0.37 -8.90 3.22 -58.49 -0.19 -9.09 16 14 C 0.15 2.78 5.62 -4.04 -0.02 2.76 16 15 C -0.10 -1.63 2.40 -90.63 -0.22 -1.84 16 16 C -0.12 -1.97 3.85 -26.73 -0.10 -2.07 16 17 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 18 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 19 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 20 C -0.11 -1.40 5.20 -26.73 -0.14 -1.54 16 21 H 0.30 8.19 6.24 -40.82 -0.25 7.93 16 22 H 0.16 4.36 6.89 -52.49 -0.36 4.00 16 23 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 24 H 0.08 1.53 7.72 -51.93 -0.40 1.13 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.06 1.08 7.16 -51.93 -0.37 0.70 16 27 H 0.08 1.69 5.93 -51.93 -0.31 1.38 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 277.10 15.07 4.18 4.18 Total: -1.00 -28.76 277.10 -6.21 -34.97 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.03 Total: 6.79 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -1.95 Total: -20.83 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 1.69 Total: -40.49 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.10 Total: 15.38 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.76 -6.21 -34.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214555184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.147 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds