Wall clock time and date at job start Mon Mar 30 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 116.99927 * 2 1 4 4 C 1.38141 * 119.93672 * 0.02562 * 3 2 1 5 5 C 1.40599 * 119.69562 * 179.97438 * 4 3 2 6 6 C 1.41405 * 120.21681 * 179.97438 * 5 4 3 7 7 H 1.08003 * 119.99947 * 24.44307 * 6 5 4 8 8 C 1.39932 * 120.00050 * 204.44523 * 6 5 4 9 9 N 1.30831 * 120.00282 * 17.89514 * 8 6 5 10 10 Si 1.86799 * 119.99920 * 197.89390 * 8 6 5 11 11 H 1.48497 * 109.47076 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47066 * 119.99670 * 10 8 6 13 13 H 1.48494 * 109.47702 * 239.99833 * 10 8 6 14 14 C 1.40759 * 119.56755 * 359.97438 * 5 4 3 15 15 C 1.37631 * 119.85782 * 359.97438 * 14 5 4 16 16 C 1.50697 * 119.84724 * 180.02562 * 15 14 5 17 17 N 1.46906 * 109.47337 * 89.99933 * 16 15 14 18 18 C 1.46892 * 111.00364 * 169.99758 * 17 16 15 19 19 C 1.46898 * 110.99983 * 293.95484 * 17 16 15 20 20 C 1.38562 * 120.30261 * 359.97438 * 15 14 5 21 21 H 1.09002 * 109.46850 * 299.99684 * 1 2 3 22 22 H 1.09000 * 109.47033 * 59.99488 * 1 2 3 23 23 H 1.08995 * 109.47222 * 179.97438 * 1 2 3 24 24 H 1.08003 * 120.14570 * 0.26479 * 4 3 2 25 25 H 0.96993 * 120.00145 * 179.97438 * 9 8 6 26 26 H 1.08005 * 120.07401 * 179.97438 * 14 5 4 27 27 H 1.09001 * 109.47334 * 209.99364 * 16 15 14 28 28 H 1.08998 * 109.47496 * 330.00036 * 16 15 14 29 29 H 1.09003 * 109.47255 * 59.99964 * 18 17 16 30 30 H 1.09001 * 109.47339 * 180.02562 * 18 17 16 31 31 H 1.09003 * 109.47348 * 300.00316 * 18 17 16 32 32 H 1.09005 * 109.47336 * 59.99294 * 19 17 16 33 33 H 1.08997 * 109.47657 * 179.97438 * 19 17 16 34 34 H 1.09001 * 109.47138 * 299.99851 * 19 17 16 35 35 H 1.08002 * 119.77548 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2923 2.3686 0.0005 5 6 1.9359 3.6186 0.0011 6 6 1.1752 4.8107 0.0011 7 1 0.1668 4.8077 0.3877 8 6 1.7290 5.9940 -0.4999 9 7 2.7827 5.9468 -1.2740 10 14 0.9639 7.6413 -0.0635 11 1 -0.2094 7.4234 0.8203 12 1 1.9652 8.4808 0.6420 13 1 0.5279 8.3292 -1.3051 14 6 3.3423 3.6758 0.0016 15 6 4.0754 2.5110 0.0021 16 6 5.5811 2.5724 0.0033 17 7 6.0694 2.5924 1.3887 18 6 7.5266 2.4135 1.4360 19 6 5.6686 3.8304 2.0704 20 6 3.4353 1.2820 0.0027 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 0.2137 2.3136 0.0053 25 1 3.1663 6.7671 -1.6216 26 1 3.8451 4.6316 0.0016 27 1 5.9809 1.6980 -0.5101 28 1 5.9083 3.4765 -0.5102 29 1 8.0098 3.2194 0.8836 30 1 7.8615 2.4318 2.4731 31 1 7.7900 1.4561 0.9864 32 1 4.5810 3.9031 2.0819 33 1 6.0425 3.8189 3.0941 34 1 6.0843 4.6876 1.5409 35 1 4.0190 0.3733 0.0035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215218132.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:10 Heat of formation + Delta-G solvation = -19.426214 kcal Electronic energy + Delta-G solvation = -16644.745670 eV Core-core repulsion = 14028.730896 eV Total energy + Delta-G solvation = -2616.014774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.81571 -37.34935 -35.73640 -33.46559 -30.53527 -29.08075 -27.13473 -26.63190 -25.88042 -24.95023 -21.66957 -20.86138 -19.51638 -17.46191 -15.83956 -15.40985 -14.93372 -14.87891 -14.71579 -14.52807 -14.28731 -14.15748 -12.95903 -12.72895 -12.08769 -11.89557 -11.69771 -11.57066 -11.30561 -11.23002 -11.12032 -11.05383 -11.00684 -10.55370 -10.44601 -9.92774 -9.76870 -9.35232 -9.06864 -7.87582 -7.42609 -6.84747 -6.74597 -4.39510 2.72982 2.96922 3.05429 3.10533 3.24040 3.90667 4.28351 4.44776 4.75088 5.49825 5.59944 5.70611 5.72530 5.77405 5.82129 5.91136 5.98418 6.06302 6.09876 6.16986 6.31933 6.53457 6.58347 6.77277 6.94238 7.01511 7.20059 7.35970 7.51596 7.54005 7.75119 7.95994 8.09143 8.20858 8.40351 8.65740 8.88114 9.00225 10.15724 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.010703 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.319704 B = 2615.485596 C = 4176.868043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.335 6.335 3 C 0.135 3.865 4 C -0.303 4.303 5 C 0.134 3.866 6 C -0.462 4.462 7 H 0.077 0.923 8 C 0.078 3.922 9 N -0.791 5.791 10 Si 0.905 3.095 11 H -0.260 1.260 12 H -0.272 1.272 13 H -0.275 1.275 14 C -0.176 4.176 15 C -0.041 4.041 16 C 0.104 3.896 17 N -0.540 5.540 18 C 0.026 3.974 19 C 0.023 3.977 20 C -0.240 4.240 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.082 0.918 24 H 0.098 0.902 25 H 0.279 0.721 26 H 0.119 0.881 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.019 0.981 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.859 -2.411 2.607 4.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.250 6.250 3 C 0.092 3.908 4 C -0.324 4.324 5 C 0.131 3.869 6 C -0.492 4.492 7 H 0.095 0.905 8 C -0.140 4.140 9 N -0.416 5.416 10 Si 0.729 3.271 11 H -0.184 1.184 12 H -0.197 1.197 13 H -0.200 1.200 14 C -0.196 4.196 15 C -0.042 4.042 16 C -0.022 4.022 17 N -0.263 5.263 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.260 4.260 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.100 0.900 24 H 0.116 0.884 25 H 0.090 0.910 26 H 0.137 0.863 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.900 -2.834 2.710 4.877 hybrid contribution -0.216 1.665 -0.359 1.717 sum 2.684 -1.169 2.350 3.754 Atomic orbital electron populations 1.22759 0.80369 1.01702 1.01007 1.85909 1.19886 1.29243 1.89974 1.18714 0.91980 0.82754 0.97389 1.21033 0.97634 0.92290 1.21408 1.17332 0.91935 0.91313 0.86284 1.19564 1.00733 0.92585 1.36323 0.90512 1.25887 0.94347 1.01206 0.92539 1.69850 1.19313 1.30130 1.22305 0.86317 0.80211 0.81245 0.79305 1.18390 1.19685 1.20003 1.21139 0.93837 0.96281 1.08340 1.18980 0.92485 0.93032 0.99688 1.20968 0.93451 0.99992 0.87838 1.61998 1.10904 1.36843 1.16588 1.22358 0.88388 1.00367 1.01180 1.22441 1.03295 0.89320 0.97421 1.19398 0.90234 0.96377 1.20011 0.93483 0.93409 0.89975 0.88389 0.90994 0.86348 0.91275 0.94571 0.96258 0.91935 0.91805 0.89765 0.92490 0.96140 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.81 101.05 0.99 1.62 16 2 O -0.34 -7.25 10.49 -19.42 -0.20 -7.46 16 3 C 0.14 3.26 6.68 -39.29 -0.26 3.00 16 4 C -0.30 -7.61 8.78 -38.73 -0.34 -7.95 16 5 C 0.13 3.58 5.57 -106.85 -0.60 2.98 16 6 C -0.46 -12.21 9.05 -37.74 -0.34 -12.55 16 7 H 0.08 1.96 7.91 -52.48 -0.42 1.55 16 8 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 9 N -0.79 -20.15 10.96 55.55 0.61 -19.54 16 10 Si 0.90 18.48 29.60 -169.99 -5.03 13.45 16 11 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 14 C -0.18 -4.50 6.59 -38.85 -0.26 -4.75 16 15 C -0.04 -0.96 4.88 -104.73 -0.51 -1.47 16 16 C 0.10 2.06 5.11 -4.97 -0.03 2.04 16 17 N -0.54 -9.79 5.01 -252.72 -1.27 -11.06 16 18 C 0.03 0.36 9.57 60.06 0.57 0.94 16 19 C 0.02 0.42 9.13 60.06 0.55 0.96 16 20 C -0.24 -5.72 9.64 -39.14 -0.38 -6.10 16 21 H 0.05 0.77 7.65 -51.93 -0.40 0.37 16 22 H 0.05 0.79 7.66 -51.93 -0.40 0.39 16 23 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.10 2.30 6.28 -52.48 -0.33 1.97 16 25 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 26 H 0.12 3.11 6.12 -52.48 -0.32 2.79 16 27 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 28 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.06 0.84 8.12 -51.93 -0.42 0.41 16 32 H 0.08 1.73 6.16 -51.93 -0.32 1.41 16 33 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 290.30 15.07 4.37 4.37 Total: -1.00 -28.27 290.30 -7.31 -35.57 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.11 Total: 4.09 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -0.68 Total: -19.43 kcal Atomic # 7 Polarization: -29.94 SS G_CDS: -0.66 Total: -30.60 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.20 Total: -7.46 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.27 -7.31 -35.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215218132.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.148 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds