Wall clock time and date at job start Mon Mar 30 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 116.99927 * 2 1 4 4 C 1.38141 * 119.93672 * 0.02562 * 3 2 1 5 5 C 1.40599 * 119.69562 * 179.97438 * 4 3 2 6 6 C 1.41405 * 120.21681 * 179.97438 * 5 4 3 7 7 H 1.08003 * 119.99947 * 24.44307 * 6 5 4 8 8 C 1.39932 * 120.00050 * 204.44523 * 6 5 4 9 9 N 1.30831 * 120.00282 * 17.89514 * 8 6 5 10 10 Si 1.86799 * 119.99920 * 197.89390 * 8 6 5 11 11 H 1.48497 * 109.47076 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47066 * 119.99670 * 10 8 6 13 13 H 1.48494 * 109.47702 * 239.99833 * 10 8 6 14 14 C 1.40759 * 119.56755 * 359.97438 * 5 4 3 15 15 C 1.37631 * 119.85782 * 359.97438 * 14 5 4 16 16 C 1.50697 * 119.84724 * 180.02562 * 15 14 5 17 17 N 1.46906 * 109.47337 * 89.99933 * 16 15 14 18 18 C 1.46892 * 111.00364 * 169.99758 * 17 16 15 19 19 C 1.46898 * 110.99983 * 293.95484 * 17 16 15 20 20 C 1.38562 * 120.30261 * 359.97438 * 15 14 5 21 21 H 1.09002 * 109.46850 * 299.99684 * 1 2 3 22 22 H 1.09000 * 109.47033 * 59.99488 * 1 2 3 23 23 H 1.08995 * 109.47222 * 179.97438 * 1 2 3 24 24 H 1.08003 * 120.14570 * 0.26479 * 4 3 2 25 25 H 0.96993 * 120.00145 * 179.97438 * 9 8 6 26 26 H 1.08005 * 120.07401 * 179.97438 * 14 5 4 27 27 H 1.09001 * 109.47334 * 209.99364 * 16 15 14 28 28 H 1.08998 * 109.47496 * 330.00036 * 16 15 14 29 29 H 1.09003 * 109.47255 * 59.99964 * 18 17 16 30 30 H 1.09001 * 109.47339 * 180.02562 * 18 17 16 31 31 H 1.09003 * 109.47348 * 300.00316 * 18 17 16 32 32 H 1.09005 * 109.47336 * 59.99294 * 19 17 16 33 33 H 1.08997 * 109.47657 * 179.97438 * 19 17 16 34 34 H 1.09001 * 109.47138 * 299.99851 * 19 17 16 35 35 H 1.08002 * 119.77548 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2923 2.3686 0.0005 5 6 1.9359 3.6186 0.0011 6 6 1.1752 4.8107 0.0011 7 1 0.1668 4.8077 0.3877 8 6 1.7290 5.9940 -0.4999 9 7 2.7827 5.9468 -1.2740 10 14 0.9639 7.6413 -0.0635 11 1 -0.2094 7.4234 0.8203 12 1 1.9652 8.4808 0.6420 13 1 0.5279 8.3292 -1.3051 14 6 3.3423 3.6758 0.0016 15 6 4.0754 2.5110 0.0021 16 6 5.5811 2.5724 0.0033 17 7 6.0694 2.5924 1.3887 18 6 7.5266 2.4135 1.4360 19 6 5.6686 3.8304 2.0704 20 6 3.4353 1.2820 0.0027 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 0.2137 2.3136 0.0053 25 1 3.1663 6.7671 -1.6216 26 1 3.8451 4.6316 0.0016 27 1 5.9809 1.6980 -0.5101 28 1 5.9083 3.4765 -0.5102 29 1 8.0098 3.2194 0.8836 30 1 7.8615 2.4318 2.4731 31 1 7.7900 1.4561 0.9864 32 1 4.5810 3.9031 2.0819 33 1 6.0425 3.8189 3.0941 34 1 6.0843 4.6876 1.5409 35 1 4.0190 0.3733 0.0035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215218132.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:10 Heat of formation + Delta-G solvation = -36.962084 kcal Electronic energy + Delta-G solvation = -16645.506083 eV Core-core repulsion = 14028.730896 eV Total energy + Delta-G solvation = -2616.775186 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.58099 -38.92208 -37.40462 -35.31413 -32.34858 -30.83903 -28.49599 -28.24953 -27.48104 -26.72901 -23.17774 -22.71194 -21.25817 -19.29343 -17.66553 -17.13990 -16.52482 -16.47886 -16.36926 -16.17859 -15.78174 -15.60889 -14.70018 -14.36290 -13.68884 -13.40317 -13.22593 -13.05657 -12.90028 -12.86242 -12.75358 -12.53819 -12.47592 -12.23139 -12.10141 -11.76274 -11.53426 -11.17605 -10.91571 -9.41367 -9.21884 -8.71759 -8.61820 -6.37978 0.90784 1.13047 1.37460 1.50058 1.52717 2.19416 2.65934 2.69979 3.20997 3.76616 4.14877 4.27554 4.39625 4.44718 4.45323 4.51813 4.58088 4.70086 4.72563 4.76343 4.79499 4.93353 5.01592 5.07240 5.11165 5.14183 5.26374 5.51130 5.85042 5.99313 6.04999 6.18645 6.23040 6.32147 6.52791 6.75955 6.92801 7.10351 8.31076 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.010703 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.319704 B = 2615.485596 C = 4176.868043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.343 6.343 3 C 0.134 3.866 4 C -0.321 4.321 5 C 0.104 3.896 6 C -0.497 4.497 7 H 0.073 0.927 8 C 0.040 3.960 9 N -0.818 5.818 10 Si 0.979 3.021 11 H -0.259 1.259 12 H -0.263 1.263 13 H -0.265 1.265 14 C -0.193 4.193 15 C -0.038 4.038 16 C 0.110 3.890 17 N -0.552 5.552 18 C 0.025 3.975 19 C 0.028 3.972 20 C -0.253 4.253 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.125 0.875 24 H 0.105 0.895 25 H 0.288 0.712 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.029 0.971 29 H 0.026 0.974 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.019 0.981 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 -2.562 3.073 5.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.258 6.258 3 C 0.090 3.910 4 C -0.342 4.342 5 C 0.102 3.898 6 C -0.526 4.526 7 H 0.091 0.909 8 C -0.176 4.176 9 N -0.444 5.444 10 Si 0.799 3.201 11 H -0.183 1.183 12 H -0.187 1.187 13 H -0.190 1.190 14 C -0.213 4.213 15 C -0.039 4.039 16 C -0.017 4.017 17 N -0.275 5.275 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.273 4.273 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.143 0.857 24 H 0.123 0.877 25 H 0.099 0.901 26 H 0.123 0.877 27 H 0.105 0.895 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.038 0.962 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.455 -3.010 3.175 5.575 hybrid contribution -0.388 1.592 -0.508 1.715 sum 3.068 -1.418 2.668 4.306 Atomic orbital electron populations 1.23099 0.77826 1.04554 1.01057 1.85893 1.22476 1.27835 1.89573 1.18865 0.92406 0.83372 0.96375 1.21166 0.98186 0.92389 1.22419 1.17738 0.92879 0.92224 0.86952 1.19795 1.01035 0.93838 1.37938 0.90860 1.26708 0.94712 1.04433 0.91724 1.69893 1.20295 1.31620 1.22587 0.85211 0.79323 0.76292 0.79231 1.18264 1.18739 1.18987 1.21047 0.93636 0.96475 1.10180 1.19342 0.94633 0.92242 0.97635 1.20889 0.91067 1.00453 0.89286 1.61962 1.13626 1.36796 1.15165 1.22459 0.85616 1.01314 1.02819 1.22361 1.01191 0.89455 0.98986 1.19693 0.90540 0.97003 1.20035 0.93301 0.93494 0.85728 0.87723 0.90115 0.87735 0.89528 0.95251 0.95550 0.89967 0.90473 0.93160 0.89842 0.96211 0.87245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.81 113.37 1.11 2.06 16 2 O -0.34 -14.52 10.49 -92.40 -0.97 -15.49 16 3 C 0.13 6.51 6.68 22.46 0.15 6.66 16 4 C -0.32 -16.52 8.78 22.82 0.20 -16.32 16 5 C 0.10 5.78 5.57 -21.31 -0.12 5.66 16 6 C -0.50 -27.06 9.05 23.46 0.21 -26.84 16 7 H 0.07 3.88 7.91 -2.91 -0.02 3.85 16 8 C 0.04 2.00 5.14 85.25 0.44 2.44 16 9 N -0.82 -42.49 10.96 21.82 0.24 -42.25 16 10 Si 0.98 38.01 29.60 68.60 2.03 40.04 16 11 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 12 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 13 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 14 C -0.19 -10.20 6.59 22.74 0.15 -10.05 16 15 C -0.04 -1.79 4.88 -19.93 -0.10 -1.88 16 16 C 0.11 4.28 5.11 85.55 0.44 4.72 16 17 N -0.55 -19.21 5.01 -953.48 -4.78 -23.99 16 18 C 0.03 0.65 9.57 127.69 1.22 1.88 16 19 C 0.03 0.99 9.13 127.69 1.17 2.16 16 20 C -0.25 -12.03 9.64 22.56 0.22 -11.81 16 21 H 0.05 1.55 7.65 -2.39 -0.02 1.53 16 22 H 0.05 1.51 7.66 -2.39 -0.02 1.50 16 23 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 24 H 0.10 5.05 6.28 -2.91 -0.02 5.03 16 25 H 0.29 13.44 8.30 -92.71 -0.77 12.68 16 26 H 0.10 5.72 6.12 -2.91 -0.02 5.70 16 27 H 0.09 3.02 8.01 -2.39 -0.02 3.00 16 28 H 0.03 1.17 8.06 -2.39 -0.02 1.15 16 29 H 0.03 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.08 1.80 8.12 -2.39 -0.02 1.78 16 31 H 0.08 1.78 8.12 -2.39 -0.02 1.76 16 32 H 0.05 2.10 6.16 -2.38 -0.01 2.09 16 33 H 0.08 2.42 8.12 -2.39 -0.02 2.40 16 34 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -61.64 290.30 2.68 -58.96 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 1.06 Total: 24.06 kcal Atomic # 6 Polarization: -46.43 SS G_CDS: 5.09 Total: -41.34 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -4.54 Total: -66.24 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.97 Total: -15.49 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -61.64 2.68 -58.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215218132.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.001 kcal (2) G-P(sol) polarization free energy of solvation -61.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds