Wall clock time and date at job start Mon Mar 30 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35638 * 117.00496 * 2 1 4 4 C 1.41357 * 120.25964 * 269.97704 * 3 2 1 5 5 C 1.41152 * 120.29471 * 0.04292 * 4 3 2 6 6 H 1.07998 * 119.99721 * 334.53774 * 5 4 3 7 7 C 1.39935 * 120.00490 * 154.54082 * 5 4 3 8 8 N 1.30867 * 119.99440 * 343.06614 * 7 5 4 9 9 Si 1.86793 * 120.00201 * 163.06336 * 7 5 4 10 10 H 1.48506 * 109.46928 * 90.00087 * 9 7 5 11 11 H 1.48501 * 109.46918 * 209.99853 * 9 7 5 12 12 H 1.48495 * 109.47341 * 329.99776 * 9 7 5 13 13 C 1.40698 * 119.41783 * 180.02562 * 4 3 2 14 14 C 1.36524 * 119.92835 * 0.02562 * 13 4 3 15 15 C 1.38784 * 120.53642 * 359.74565 * 14 13 4 16 16 C 1.38346 * 120.59331 * 0.51404 * 15 14 13 17 17 C 1.50694 * 119.97485 * 179.76744 * 16 15 14 18 18 N 1.46903 * 109.47159 * 259.72272 * 17 16 15 19 19 C 1.46900 * 110.99870 * 66.04431 * 18 17 16 20 20 C 1.46897 * 110.99995 * 190.00043 * 18 17 16 21 21 H 1.09006 * 109.47158 * 60.00288 * 1 2 3 22 22 H 1.08997 * 109.47505 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47045 * 300.00736 * 1 2 3 24 24 H 0.97001 * 119.99745 * 180.02562 * 8 7 5 25 25 H 1.07996 * 120.03510 * 179.97438 * 13 4 3 26 26 H 1.07999 * 119.73080 * 179.97438 * 14 13 4 27 27 H 1.08000 * 119.70003 * 180.27781 * 15 14 13 28 28 H 1.08996 * 109.47695 * 139.72180 * 17 16 15 29 29 H 1.09007 * 109.47122 * 19.72084 * 17 16 15 30 30 H 1.09005 * 109.47039 * 183.95741 * 19 18 17 31 31 H 1.08998 * 109.47049 * 303.95171 * 19 18 17 32 32 H 1.09002 * 109.47341 * 63.95497 * 19 18 17 33 33 H 1.08998 * 109.46965 * 299.99354 * 20 18 17 34 34 H 1.09000 * 109.47130 * 59.99803 * 20 18 17 35 35 H 1.09002 * 109.46996 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 2.3688 1.8429 -1.2210 5 6 2.0533 1.2249 -2.4502 6 1 1.9564 0.1506 -2.5052 7 6 1.8661 2.0039 -3.5974 8 7 1.6530 3.2904 -3.4870 9 14 1.9205 1.2077 -5.2862 10 1 0.5561 0.7626 -5.6678 11 1 2.4167 2.1917 -6.2817 12 1 2.8320 0.0358 -5.2519 13 6 3.0080 3.0961 -1.2003 14 6 3.3099 3.6872 -0.0072 15 6 2.9866 3.0643 1.1901 16 6 2.3626 1.8295 1.1953 17 6 2.0226 1.1633 2.5036 18 7 3.0319 0.1407 2.8093 19 6 4.3433 0.7536 3.0596 20 6 2.6129 -0.6891 3.9466 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 1.5229 3.8304 -4.2823 25 1 3.2604 3.5896 -2.1272 26 1 3.8010 4.6490 0.0049 27 1 3.2276 3.5461 2.1261 28 1 1.0415 0.6944 2.4284 29 1 2.0088 1.9093 3.2984 30 1 5.0865 -0.0287 3.2140 31 1 4.6295 1.3624 2.2020 32 1 4.2870 1.3819 3.9486 33 1 2.4767 -0.0589 4.8255 34 1 1.6730 -1.1864 3.7068 35 1 3.3779 -1.4381 4.1513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215218267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:12 Heat of formation + Delta-G solvation = -14.606389 kcal Electronic energy + Delta-G solvation = -16975.078471 eV Core-core repulsion = 14359.272700 eV Total energy + Delta-G solvation = -2615.805771 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.72197 -36.59602 -35.68150 -33.65864 -30.36334 -29.24054 -27.16736 -26.56267 -25.40404 -24.78823 -21.73899 -20.64134 -19.80091 -17.00554 -16.18558 -15.46925 -14.98346 -14.89752 -14.53009 -14.15774 -14.08652 -13.58500 -12.85838 -12.61163 -12.18237 -12.01766 -11.72901 -11.54741 -11.35498 -11.19576 -11.07084 -10.99129 -10.91937 -10.53238 -10.26713 -9.94135 -9.53871 -9.17748 -8.51115 -7.85252 -7.34528 -7.21143 -6.76286 -4.32546 2.72988 2.80538 3.07425 3.12016 3.20766 3.93701 4.44242 4.70550 5.10765 5.48955 5.55632 5.69398 5.72963 5.76269 5.95626 6.03833 6.10171 6.11905 6.24696 6.29643 6.41123 6.44145 6.51477 6.62602 7.04709 7.17243 7.26721 7.40039 7.51204 7.54984 7.79252 7.95675 8.09285 8.25719 8.47480 8.77881 8.86062 9.23197 10.16176 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.032379 B = 0.007926 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.551335 B = 3531.638472 C = 3989.981367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.317 6.317 3 C -0.005 4.005 4 C 0.097 3.903 5 C -0.445 4.445 6 H 0.084 0.916 7 C 0.074 3.926 8 N -0.794 5.794 9 Si 0.908 3.092 10 H -0.270 1.270 11 H -0.276 1.276 12 H -0.259 1.259 13 C -0.154 4.154 14 C -0.108 4.108 15 C -0.228 4.228 16 C -0.072 4.072 17 C 0.111 3.889 18 N -0.531 5.531 19 C 0.027 3.973 20 C 0.028 3.972 21 H 0.041 0.959 22 H 0.069 0.931 23 H 0.023 0.977 24 H 0.280 0.720 25 H 0.119 0.881 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.014 0.986 33 H 0.015 0.985 34 H 0.064 0.936 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -2.630 6.589 7.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.233 6.233 3 C -0.050 4.050 4 C 0.094 3.906 5 C -0.474 4.474 6 H 0.102 0.898 7 C -0.144 4.144 8 N -0.419 5.419 9 Si 0.732 3.268 10 H -0.195 1.195 11 H -0.201 1.201 12 H -0.183 1.183 13 C -0.173 4.173 14 C -0.127 4.127 15 C -0.248 4.248 16 C -0.073 4.073 17 C -0.016 4.016 18 N -0.254 5.254 19 C -0.121 4.121 20 C -0.120 4.120 21 H 0.060 0.940 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.091 0.909 25 H 0.137 0.863 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.083 0.917 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.140 -2.911 6.040 6.706 hybrid contribution -0.331 0.585 -0.071 0.676 sum -0.191 -2.326 5.969 6.409 Atomic orbital electron populations 1.22717 0.83394 1.00351 0.99325 1.85981 1.16893 1.26274 1.94130 1.18368 1.05625 0.89731 0.91311 1.17871 0.89501 0.91308 0.91903 1.19515 1.40730 0.95296 0.91896 0.89809 1.25965 0.92261 0.94592 1.01575 1.69844 1.33642 1.06607 1.31855 0.86309 0.79540 0.80159 0.80758 1.19507 1.20130 1.18302 1.20980 1.01853 0.97764 0.96731 1.20398 1.00773 0.98269 0.93249 1.20086 1.11460 0.96977 0.96242 1.19402 1.01114 0.94109 0.92690 1.20829 0.94776 0.91731 0.94271 1.61907 1.02765 1.23125 1.37616 1.22378 0.90997 0.98484 1.00273 1.22340 1.01235 0.97112 0.91357 0.94032 0.91285 0.95878 0.90868 0.86315 0.89386 0.89575 0.91188 0.95735 0.92302 0.90239 0.96705 0.96606 0.91713 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.84 101.05 1.10 1.84 16 2 O -0.32 -7.59 9.05 -18.61 -0.17 -7.76 16 3 C -0.01 -0.13 5.73 -38.34 -0.22 -0.35 16 4 C 0.10 2.62 5.58 -106.68 -0.59 2.02 16 5 C -0.45 -11.94 8.71 -37.84 -0.33 -12.27 16 6 H 0.08 2.25 7.66 -52.49 -0.40 1.85 16 7 C 0.07 1.85 5.15 -17.33 -0.09 1.76 16 8 N -0.79 -20.35 10.97 55.55 0.61 -19.75 16 9 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 10 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 11 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 13 C -0.15 -3.99 8.63 -39.27 -0.34 -4.33 16 14 C -0.11 -2.53 9.97 -40.00 -0.40 -2.93 16 15 C -0.23 -5.07 8.64 -39.34 -0.34 -5.41 16 16 C -0.07 -1.64 4.58 -104.52 -0.48 -2.12 16 17 C 0.11 2.13 4.76 -4.98 -0.02 2.11 16 18 N -0.53 -9.60 5.01 -252.72 -1.27 -10.86 16 19 C 0.03 0.45 9.36 60.06 0.56 1.01 16 20 C 0.03 0.40 9.57 60.06 0.57 0.98 16 21 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.02 0.43 7.13 -51.93 -0.37 0.06 16 24 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 25 H 0.12 3.16 6.19 -52.49 -0.33 2.83 16 26 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.09 1.72 8.03 -52.49 -0.42 1.30 16 28 H 0.07 1.33 6.49 -51.93 -0.34 0.99 16 29 H 0.02 0.44 7.97 -51.93 -0.41 0.03 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.48 6.43 -51.93 -0.33 1.15 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 290.69 15.07 4.38 4.38 Total: -1.00 -28.08 290.69 -7.17 -35.26 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.12 Total: 2.62 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -0.58 Total: -17.69 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: -0.66 Total: -30.61 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.17 Total: -7.76 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.08 -7.17 -35.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215218267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.651 kcal (2) G-P(sol) polarization free energy of solvation -28.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds