Wall clock time and date at job start Mon Mar 30 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35638 * 117.00496 * 2 1 4 4 C 1.41357 * 120.25964 * 269.97704 * 3 2 1 5 5 C 1.41152 * 120.29471 * 0.04292 * 4 3 2 6 6 H 1.07998 * 119.99721 * 334.53774 * 5 4 3 7 7 C 1.39935 * 120.00490 * 154.54082 * 5 4 3 8 8 N 1.30867 * 119.99440 * 343.06614 * 7 5 4 9 9 Si 1.86793 * 120.00201 * 163.06336 * 7 5 4 10 10 H 1.48506 * 109.46928 * 90.00087 * 9 7 5 11 11 H 1.48501 * 109.46918 * 209.99853 * 9 7 5 12 12 H 1.48495 * 109.47341 * 329.99776 * 9 7 5 13 13 C 1.40698 * 119.41783 * 180.02562 * 4 3 2 14 14 C 1.36524 * 119.92835 * 0.02562 * 13 4 3 15 15 C 1.38784 * 120.53642 * 359.74565 * 14 13 4 16 16 C 1.38346 * 120.59331 * 0.51404 * 15 14 13 17 17 C 1.50694 * 119.97485 * 179.76744 * 16 15 14 18 18 N 1.46903 * 109.47159 * 259.72272 * 17 16 15 19 19 C 1.46900 * 110.99870 * 66.04431 * 18 17 16 20 20 C 1.46897 * 110.99995 * 190.00043 * 18 17 16 21 21 H 1.09006 * 109.47158 * 60.00288 * 1 2 3 22 22 H 1.08997 * 109.47505 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47045 * 300.00736 * 1 2 3 24 24 H 0.97001 * 119.99745 * 180.02562 * 8 7 5 25 25 H 1.07996 * 120.03510 * 179.97438 * 13 4 3 26 26 H 1.07999 * 119.73080 * 179.97438 * 14 13 4 27 27 H 1.08000 * 119.70003 * 180.27781 * 15 14 13 28 28 H 1.08996 * 109.47695 * 139.72180 * 17 16 15 29 29 H 1.09007 * 109.47122 * 19.72084 * 17 16 15 30 30 H 1.09005 * 109.47039 * 183.95741 * 19 18 17 31 31 H 1.08998 * 109.47049 * 303.95171 * 19 18 17 32 32 H 1.09002 * 109.47341 * 63.95497 * 19 18 17 33 33 H 1.08998 * 109.46965 * 299.99354 * 20 18 17 34 34 H 1.09000 * 109.47130 * 59.99803 * 20 18 17 35 35 H 1.09002 * 109.46996 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 2.3688 1.8429 -1.2210 5 6 2.0533 1.2249 -2.4502 6 1 1.9564 0.1506 -2.5052 7 6 1.8661 2.0039 -3.5974 8 7 1.6530 3.2904 -3.4870 9 14 1.9205 1.2077 -5.2862 10 1 0.5561 0.7626 -5.6678 11 1 2.4167 2.1917 -6.2817 12 1 2.8320 0.0358 -5.2519 13 6 3.0080 3.0961 -1.2003 14 6 3.3099 3.6872 -0.0072 15 6 2.9866 3.0643 1.1901 16 6 2.3626 1.8295 1.1953 17 6 2.0226 1.1633 2.5036 18 7 3.0319 0.1407 2.8093 19 6 4.3433 0.7536 3.0596 20 6 2.6129 -0.6891 3.9466 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 1.5229 3.8304 -4.2823 25 1 3.2604 3.5896 -2.1272 26 1 3.8010 4.6490 0.0049 27 1 3.2276 3.5461 2.1261 28 1 1.0415 0.6944 2.4284 29 1 2.0088 1.9093 3.2984 30 1 5.0865 -0.0287 3.2140 31 1 4.6295 1.3624 2.2020 32 1 4.2870 1.3819 3.9486 33 1 2.4767 -0.0589 4.8255 34 1 1.6730 -1.1864 3.7068 35 1 3.3779 -1.4381 4.1513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215218267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:12 Heat of formation + Delta-G solvation = -31.875656 kcal Electronic energy + Delta-G solvation = -16975.827322 eV Core-core repulsion = 14359.272700 eV Total energy + Delta-G solvation = -2616.554622 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48763 -38.06028 -37.48898 -35.50192 -32.10619 -31.07868 -28.39870 -28.22939 -27.06717 -26.57848 -23.21611 -22.48683 -21.52219 -18.87885 -18.02561 -17.23400 -16.57686 -16.40536 -16.04674 -15.75256 -15.61790 -15.19478 -14.61425 -14.33626 -13.84451 -13.36826 -13.29001 -13.12534 -12.82026 -12.78032 -12.59899 -12.54796 -12.48636 -12.19625 -12.04595 -11.70345 -11.36135 -11.04183 -10.31483 -9.31918 -9.14598 -9.00241 -8.62697 -6.30123 0.90353 0.98000 1.36896 1.47196 1.53411 2.20649 2.67238 3.25310 3.33581 3.85539 4.12349 4.23180 4.39901 4.51488 4.54490 4.61172 4.65118 4.72532 4.78145 4.80431 4.85626 4.91587 5.03578 5.11625 5.13776 5.31390 5.39646 5.58103 5.88121 6.07798 6.12084 6.18594 6.31360 6.39653 6.54758 6.86081 6.92185 7.37256 8.31817 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.032379 B = 0.007926 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.551335 B = 3531.638472 C = 3989.981367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.333 6.333 3 C -0.019 4.019 4 C 0.063 3.937 5 C -0.480 4.480 6 H 0.069 0.931 7 C 0.036 3.964 8 N -0.823 5.823 9 Si 0.978 3.022 10 H -0.261 1.261 11 H -0.263 1.263 12 H -0.263 1.263 13 C -0.179 4.179 14 C -0.112 4.112 15 C -0.220 4.220 16 C -0.075 4.075 17 C 0.118 3.882 18 N -0.556 5.556 19 C 0.030 3.970 20 C 0.030 3.970 21 H 0.020 0.980 22 H 0.102 0.898 23 H 0.037 0.963 24 H 0.288 0.712 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.066 0.934 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 -3.088 7.955 8.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.250 6.250 3 C -0.064 4.064 4 C 0.061 3.939 5 C -0.509 4.509 6 H 0.087 0.913 7 C -0.178 4.178 8 N -0.449 5.449 9 Si 0.798 3.202 10 H -0.186 1.186 11 H -0.187 1.187 12 H -0.187 1.187 13 C -0.199 4.199 14 C -0.130 4.130 15 C -0.239 4.239 16 C -0.076 4.076 17 C -0.009 4.009 18 N -0.280 5.280 19 C -0.118 4.118 20 C -0.118 4.118 21 H 0.038 0.962 22 H 0.120 0.880 23 H 0.056 0.944 24 H 0.099 0.901 25 H 0.120 0.880 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.106 -3.365 7.429 8.157 hybrid contribution -0.321 0.716 -0.336 0.854 sum -0.215 -2.649 7.094 7.575 Atomic orbital electron populations 1.22851 0.81368 1.02442 0.98953 1.85902 1.18831 1.26043 1.94194 1.18627 1.06075 0.90015 0.91732 1.18251 0.90443 0.92271 0.92968 1.19576 1.43239 0.94779 0.93347 0.91267 1.26718 0.91285 0.95017 1.04817 1.69881 1.34094 1.07736 1.33224 0.85273 0.79688 0.79117 0.76087 1.18606 1.18748 1.18686 1.20941 1.03586 0.98165 0.97190 1.20693 1.00296 0.99164 0.92853 1.20438 1.09834 0.96719 0.96942 1.19787 0.99933 0.94196 0.93679 1.20729 0.95140 0.92371 0.92690 1.61835 1.02980 1.23174 1.40054 1.22335 0.90754 0.98975 0.99742 1.22385 1.01824 0.97041 0.90546 0.96168 0.87978 0.94408 0.90091 0.87961 0.86950 0.86611 0.91208 0.94075 0.90658 0.92976 0.94883 0.94974 0.91526 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 10.84 113.37 1.23 2.76 16 2 O -0.33 -16.06 9.05 -89.52 -0.81 -16.87 16 3 C -0.02 -0.99 5.73 23.08 0.13 -0.86 16 4 C 0.06 3.53 5.58 -21.20 -0.12 3.41 16 5 C -0.48 -26.83 8.71 23.40 0.20 -26.62 16 6 H 0.07 3.91 7.66 -2.91 -0.02 3.89 16 7 C 0.04 1.88 5.15 85.25 0.44 2.31 16 8 N -0.82 -43.39 10.97 21.83 0.24 -43.15 16 9 Si 0.98 39.30 29.59 68.60 2.03 41.33 16 10 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 11 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 12 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 13 C -0.18 -9.57 8.63 22.47 0.19 -9.38 16 14 C -0.11 -5.19 9.97 22.00 0.22 -4.97 16 15 C -0.22 -9.45 8.64 22.43 0.19 -9.26 16 16 C -0.07 -3.34 4.58 -19.80 -0.09 -3.43 16 17 C 0.12 4.27 4.76 85.55 0.41 4.67 16 18 N -0.56 -18.75 5.01 -953.47 -4.78 -23.53 16 19 C 0.03 0.92 9.36 127.69 1.20 2.11 16 20 C 0.03 0.75 9.57 127.69 1.22 1.97 16 21 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 22 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 23 H 0.04 1.36 7.13 -2.39 -0.02 1.34 16 24 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 25 H 0.10 5.69 6.19 -2.91 -0.02 5.67 16 26 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 27 H 0.12 4.26 8.03 -2.91 -0.02 4.24 16 28 H 0.07 2.50 6.49 -2.39 -0.02 2.49 16 29 H 0.04 1.34 7.97 -2.38 -0.02 1.32 16 30 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.05 1.86 6.43 -2.39 -0.02 1.85 16 32 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 1.64 8.12 -2.39 -0.02 1.62 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -61.71 290.69 2.97 -58.74 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 1.06 Total: 20.75 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 5.23 Total: -37.28 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -4.54 Total: -66.68 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.81 Total: -16.87 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -61.71 2.97 -58.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215218267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.861 kcal (2) G-P(sol) polarization free energy of solvation -61.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds