Wall clock time and date at job start Mon Mar 30 2020 03:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35678 * 116.99689 * 2 1 4 4 C 1.39336 * 119.81679 * 359.72639 * 3 2 1 5 5 C 1.36416 * 120.18173 * 179.75272 * 4 3 2 6 6 C 1.40847 * 119.81314 * 0.54601 * 5 4 3 7 7 C 1.41216 * 120.18019 * 179.73739 * 6 5 4 8 8 H 1.08001 * 119.99743 * 150.14160 * 7 6 5 9 9 C 1.39888 * 120.00175 * 330.13454 * 7 6 5 10 10 N 1.30883 * 120.00233 * 161.72302 * 9 7 6 11 11 Si 1.86799 * 119.99899 * 341.72918 * 9 7 6 12 12 H 1.48508 * 109.47334 * 95.41091 * 11 9 7 13 13 H 1.48498 * 109.47393 * 215.41145 * 11 9 7 14 14 H 1.48501 * 109.47271 * 335.41495 * 11 9 7 15 15 C 1.40819 * 119.64021 * 359.70722 * 6 5 4 16 16 C 1.36452 * 119.81148 * 0.02562 * 15 6 5 17 17 C 1.50705 * 119.90565 * 180.02562 * 16 15 6 18 18 N 1.46902 * 109.46632 * 260.01744 * 17 16 15 19 19 C 1.46901 * 110.99911 * 170.00082 * 18 17 16 20 20 C 1.46907 * 110.99809 * 293.95398 * 18 17 16 21 21 H 1.09001 * 109.46942 * 299.99553 * 1 2 3 22 22 H 1.08995 * 109.47217 * 59.99535 * 1 2 3 23 23 H 1.08999 * 109.46779 * 179.97438 * 1 2 3 24 24 H 1.08000 * 119.90546 * 0.02562 * 4 3 2 25 25 H 1.07998 * 120.09384 * 180.23058 * 5 4 3 26 26 H 0.96997 * 119.99899 * 180.02562 * 10 9 7 27 27 H 1.08000 * 120.09368 * 180.02562 * 15 6 5 28 28 H 1.08997 * 109.47530 * 20.01346 * 17 16 15 29 29 H 1.09004 * 109.47136 * 140.01784 * 17 16 15 30 30 H 1.09005 * 109.47017 * 59.99831 * 19 18 17 31 31 H 1.09005 * 109.47218 * 179.97438 * 19 18 17 32 32 H 1.08998 * 109.47228 * 300.00222 * 19 18 17 33 33 H 1.08996 * 109.47301 * 60.00208 * 20 18 17 34 34 H 1.09006 * 109.46970 * 180.02562 * 20 18 17 35 35 H 1.09007 * 109.46962 * 300.00030 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2822 2.3750 -0.0058 5 6 1.8937 3.5945 -0.0007 6 6 3.3000 3.6727 -0.0013 7 6 3.9410 4.9309 -0.0017 8 1 4.9091 5.0439 0.4636 9 6 3.3223 6.0310 -0.6048 10 7 3.7142 7.2447 -0.3111 11 14 1.9364 5.7678 -1.8293 12 1 0.6307 5.8768 -1.1302 13 1 2.0148 6.7989 -2.8950 14 1 2.0617 4.4182 -2.4362 15 6 4.0633 2.4893 -0.0008 16 6 3.4361 1.2775 -0.0003 17 6 4.2509 0.0097 0.0007 18 7 4.3141 -0.5328 -1.3630 19 6 5.2881 -1.6292 -1.4488 20 6 2.9875 -0.9703 -1.8176 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2040 2.3132 -0.0098 25 1 1.3012 4.4974 -0.0015 26 1 3.2849 8.0075 -0.7290 27 1 5.1421 2.5407 -0.0008 28 1 5.2595 0.2262 0.3527 29 1 3.7846 -0.7213 0.6613 30 1 4.9960 -2.4287 -0.7677 31 1 5.3145 -2.0128 -2.4687 32 1 6.2759 -1.2601 -1.1733 33 1 2.3029 -0.1221 -1.8103 34 1 3.0631 -1.3679 -2.8297 35 1 2.6122 -1.7459 -1.1499 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215218337.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:14 Heat of formation + Delta-G solvation = -9.637912 kcal Electronic energy + Delta-G solvation = -16931.810255 eV Core-core repulsion = 14316.219934 eV Total energy + Delta-G solvation = -2615.590321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.38891 -36.80410 -36.37789 -33.34963 -31.05689 -29.74774 -27.37832 -26.90466 -26.15958 -24.32784 -22.07233 -20.58152 -20.10972 -17.25254 -17.02104 -15.71409 -15.57864 -15.01326 -14.63696 -14.34572 -14.25072 -13.48699 -13.21528 -12.80450 -12.49088 -12.12483 -12.02195 -11.94498 -11.57961 -11.41822 -11.13808 -11.03886 -10.85186 -10.67487 -10.25442 -10.03131 -9.83392 -9.49035 -9.03375 -7.98462 -7.72744 -7.12920 -6.88204 -4.34572 2.54717 2.60330 3.12455 3.23820 3.35639 4.02608 4.16703 4.34691 4.68519 5.37262 5.48821 5.52414 5.53735 5.59986 5.64939 5.71510 5.80742 5.96407 5.97625 6.02155 6.09893 6.16452 6.38934 6.57583 6.66978 6.81830 7.01968 7.17777 7.42504 7.46466 7.49224 7.60710 7.83385 7.96758 8.30101 8.42260 8.71597 8.86241 10.15039 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.027701 B = 0.008473 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.557452 B = 3303.755980 C = 3831.074537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.325 6.325 3 C -0.003 4.003 4 C -0.152 4.152 5 C -0.209 4.209 6 C 0.072 3.928 7 C -0.448 4.448 8 H 0.090 0.910 9 C 0.084 3.916 10 N -0.814 5.814 11 Si 0.908 3.092 12 H -0.273 1.273 13 H -0.291 1.291 14 H -0.244 1.244 15 C -0.157 4.157 16 C -0.065 4.065 17 C 0.109 3.891 18 N -0.540 5.540 19 C 0.026 3.974 20 C 0.031 3.969 21 H 0.043 0.957 22 H 0.043 0.957 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.283 0.717 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 -11.904 -1.567 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.240 6.240 3 C -0.047 4.047 4 C -0.171 4.171 5 C -0.228 4.228 6 C 0.069 3.931 7 C -0.477 4.477 8 H 0.108 0.892 9 C -0.134 4.134 10 N -0.439 5.439 11 Si 0.735 3.265 12 H -0.200 1.200 13 H -0.219 1.219 14 H -0.167 1.167 15 C -0.177 4.177 16 C -0.066 4.066 17 C -0.018 4.018 18 N -0.264 5.264 19 C -0.123 4.123 20 C -0.117 4.117 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.100 0.900 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.094 0.906 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.187 -11.433 -1.888 12.018 hybrid contribution -1.236 -0.294 0.008 1.271 sum -4.423 -11.727 -1.880 12.673 Atomic orbital electron populations 1.22719 0.81212 1.01777 1.00471 1.85972 1.18964 1.28177 1.90917 1.18275 0.91213 0.82954 1.12227 1.20467 0.97655 0.92842 1.06086 1.20627 0.95019 0.95622 1.11545 1.17693 0.91100 0.93379 0.90890 1.19358 1.05631 0.90807 1.31937 0.89216 1.26095 0.96710 0.94279 0.96276 1.69723 1.38817 0.99331 1.36068 0.86368 0.80322 0.79730 0.80115 1.19957 1.21884 1.16726 1.20546 0.98367 0.90590 1.08200 1.18399 0.89726 0.94280 1.04224 1.20846 0.98735 0.93963 0.88221 1.62038 1.08284 1.31958 1.24108 1.22358 0.96547 0.92631 1.00723 1.22517 0.90482 1.00740 0.97936 0.93861 0.93867 0.90010 0.88231 0.88052 0.90649 0.87337 0.91001 0.94628 0.96366 0.91955 0.91728 0.89567 0.93342 0.95836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.80 101.05 0.99 1.47 16 2 O -0.32 -5.89 6.50 -18.74 -0.12 -6.01 16 3 C 0.00 -0.07 5.43 -38.78 -0.21 -0.28 16 4 C -0.15 -3.30 8.96 -39.83 -0.36 -3.66 16 5 C -0.21 -5.06 7.12 -39.25 -0.28 -5.34 16 6 C 0.07 1.84 5.10 -106.80 -0.55 1.30 16 7 C -0.45 -12.23 9.56 -37.83 -0.36 -12.59 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 9 C 0.08 2.24 5.40 -17.34 -0.09 2.14 16 10 N -0.81 -22.03 13.93 55.54 0.77 -21.25 16 11 Si 0.91 21.16 24.52 -169.99 -4.17 16.99 16 12 H -0.27 -6.16 6.70 56.52 0.38 -5.78 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.24 -5.87 6.87 56.52 0.39 -5.49 16 15 C -0.16 -3.68 9.35 -39.25 -0.37 -4.04 16 16 C -0.07 -1.40 5.13 -104.87 -0.54 -1.94 16 17 C 0.11 1.99 4.98 -4.97 -0.02 1.97 16 18 N -0.54 -9.32 5.01 -252.70 -1.27 -10.59 16 19 C 0.03 0.35 9.57 60.07 0.57 0.93 16 20 C 0.03 0.51 8.04 60.07 0.48 1.00 16 21 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 22 H 0.04 0.59 7.63 -51.93 -0.40 0.20 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.10 1.90 6.27 -52.49 -0.33 1.57 16 25 H 0.10 2.46 4.73 -52.49 -0.25 2.21 16 26 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 27 H 0.11 2.42 8.02 -52.49 -0.42 2.00 16 28 H 0.07 1.22 7.90 -51.93 -0.41 0.81 16 29 H 0.04 0.64 7.82 -51.93 -0.41 0.23 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 32 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 33 H 0.09 1.61 5.00 -51.93 -0.26 1.35 16 34 H 0.05 0.71 8.12 -51.93 -0.42 0.28 16 35 H 0.02 0.37 7.70 -51.93 -0.40 -0.03 16 LS Contribution 278.82 15.07 4.20 4.20 Total: -1.00 -28.26 278.82 -6.28 -34.53 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.97 Total: 1.17 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -0.73 Total: -19.04 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: -0.49 Total: -31.84 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.12 Total: -6.01 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.17 Total: 16.99 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.26 -6.28 -34.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215218337.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.897 kcal (2) G-P(sol) polarization free energy of solvation -28.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds