Wall clock time and date at job start Mon Mar 30 2020 03:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35678 * 116.99689 * 2 1 4 4 C 1.39336 * 119.81679 * 359.72639 * 3 2 1 5 5 C 1.36416 * 120.18173 * 179.75272 * 4 3 2 6 6 C 1.40847 * 119.81314 * 0.54601 * 5 4 3 7 7 C 1.41216 * 120.18019 * 179.73739 * 6 5 4 8 8 H 1.08001 * 119.99743 * 150.14160 * 7 6 5 9 9 C 1.39888 * 120.00175 * 330.13454 * 7 6 5 10 10 N 1.30883 * 120.00233 * 161.72302 * 9 7 6 11 11 Si 1.86799 * 119.99899 * 341.72918 * 9 7 6 12 12 H 1.48508 * 109.47334 * 95.41091 * 11 9 7 13 13 H 1.48498 * 109.47393 * 215.41145 * 11 9 7 14 14 H 1.48501 * 109.47271 * 335.41495 * 11 9 7 15 15 C 1.40819 * 119.64021 * 359.70722 * 6 5 4 16 16 C 1.36452 * 119.81148 * 0.02562 * 15 6 5 17 17 C 1.50705 * 119.90565 * 180.02562 * 16 15 6 18 18 N 1.46902 * 109.46632 * 260.01744 * 17 16 15 19 19 C 1.46901 * 110.99911 * 170.00082 * 18 17 16 20 20 C 1.46907 * 110.99809 * 293.95398 * 18 17 16 21 21 H 1.09001 * 109.46942 * 299.99553 * 1 2 3 22 22 H 1.08995 * 109.47217 * 59.99535 * 1 2 3 23 23 H 1.08999 * 109.46779 * 179.97438 * 1 2 3 24 24 H 1.08000 * 119.90546 * 0.02562 * 4 3 2 25 25 H 1.07998 * 120.09384 * 180.23058 * 5 4 3 26 26 H 0.96997 * 119.99899 * 180.02562 * 10 9 7 27 27 H 1.08000 * 120.09368 * 180.02562 * 15 6 5 28 28 H 1.08997 * 109.47530 * 20.01346 * 17 16 15 29 29 H 1.09004 * 109.47136 * 140.01784 * 17 16 15 30 30 H 1.09005 * 109.47017 * 59.99831 * 19 18 17 31 31 H 1.09005 * 109.47218 * 179.97438 * 19 18 17 32 32 H 1.08998 * 109.47228 * 300.00222 * 19 18 17 33 33 H 1.08996 * 109.47301 * 60.00208 * 20 18 17 34 34 H 1.09006 * 109.46970 * 180.02562 * 20 18 17 35 35 H 1.09007 * 109.46962 * 300.00030 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2822 2.3750 -0.0058 5 6 1.8937 3.5945 -0.0007 6 6 3.3000 3.6727 -0.0013 7 6 3.9410 4.9309 -0.0017 8 1 4.9091 5.0439 0.4636 9 6 3.3223 6.0310 -0.6048 10 7 3.7142 7.2447 -0.3111 11 14 1.9364 5.7678 -1.8293 12 1 0.6307 5.8768 -1.1302 13 1 2.0148 6.7989 -2.8950 14 1 2.0617 4.4182 -2.4362 15 6 4.0633 2.4893 -0.0008 16 6 3.4361 1.2775 -0.0003 17 6 4.2509 0.0097 0.0007 18 7 4.3141 -0.5328 -1.3630 19 6 5.2881 -1.6292 -1.4488 20 6 2.9875 -0.9703 -1.8176 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2040 2.3132 -0.0098 25 1 1.3012 4.4974 -0.0015 26 1 3.2849 8.0075 -0.7290 27 1 5.1421 2.5407 -0.0008 28 1 5.2595 0.2262 0.3527 29 1 3.7846 -0.7213 0.6613 30 1 4.9960 -2.4287 -0.7677 31 1 5.3145 -2.0128 -2.4687 32 1 6.2759 -1.2601 -1.1733 33 1 2.3029 -0.1221 -1.8103 34 1 3.0631 -1.3679 -2.8297 35 1 2.6122 -1.7459 -1.1499 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215218337.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:14 Heat of formation + Delta-G solvation = -28.382689 kcal Electronic energy + Delta-G solvation = -16932.623090 eV Core-core repulsion = 14316.219934 eV Total energy + Delta-G solvation = -2616.403156 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.00327 -38.29499 -37.90574 -35.24430 -32.71847 -31.56854 -28.66263 -28.10556 -27.71330 -26.09267 -23.53119 -22.30103 -21.75827 -19.05366 -18.71440 -17.33082 -17.00913 -16.70271 -16.05557 -15.65157 -15.60177 -15.19737 -14.83042 -14.57371 -14.13161 -13.74852 -13.60325 -13.20509 -12.97321 -12.76535 -12.63484 -12.48382 -12.40142 -12.24952 -11.96461 -11.85968 -11.50886 -11.25443 -10.87969 -9.61603 -9.17819 -8.89402 -8.84477 -6.35451 0.74600 0.79167 1.25056 1.39644 1.49034 2.13812 2.56714 2.75074 3.22036 3.59190 4.02625 4.10203 4.30164 4.36391 4.49867 4.52069 4.56619 4.61249 4.71486 4.78028 4.80235 4.85535 4.94504 5.03093 5.03964 5.20287 5.27101 5.35799 5.68396 5.74485 5.90368 6.12474 6.18645 6.28439 6.35198 6.61651 6.83756 6.95485 8.24804 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.027701 B = 0.008473 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.557452 B = 3303.755980 C = 3831.074537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.325 6.325 3 C 0.024 3.976 4 C -0.162 4.162 5 C -0.216 4.216 6 C 0.048 3.952 7 C -0.485 4.485 8 H 0.055 0.945 9 C 0.047 3.953 10 N -0.857 5.857 11 Si 0.962 3.038 12 H -0.259 1.259 13 H -0.278 1.278 14 H -0.257 1.257 15 C -0.164 4.164 16 C -0.075 4.075 17 C 0.116 3.884 18 N -0.561 5.561 19 C 0.027 3.973 20 C 0.036 3.964 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.117 0.883 24 H 0.131 0.869 25 H 0.099 0.901 26 H 0.291 0.709 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 -14.812 -2.294 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.240 6.240 3 C -0.020 4.020 4 C -0.180 4.180 5 C -0.236 4.236 6 C 0.046 3.954 7 C -0.515 4.515 8 H 0.074 0.926 9 C -0.166 4.166 10 N -0.485 5.485 11 Si 0.786 3.214 12 H -0.184 1.184 13 H -0.205 1.205 14 H -0.181 1.181 15 C -0.184 4.184 16 C -0.076 4.076 17 C -0.012 4.012 18 N -0.286 5.286 19 C -0.121 4.121 20 C -0.112 4.112 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.136 0.864 24 H 0.149 0.851 25 H 0.116 0.884 26 H 0.101 0.899 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.974 -14.360 -2.610 15.420 hybrid contribution -0.735 0.284 0.281 0.837 sum -5.709 -14.076 -2.329 15.367 Atomic orbital electron populations 1.23098 0.78574 1.04491 1.01079 1.85998 1.21556 1.26231 1.90204 1.18442 0.91321 0.83955 1.08296 1.20782 0.99484 0.92057 1.05699 1.20714 0.94423 0.96720 1.11712 1.17811 0.92130 0.93258 0.92250 1.19333 1.05147 0.92656 1.34383 0.92629 1.26723 0.98753 0.93819 0.97294 1.69754 1.40830 1.00032 1.37858 0.85545 0.78465 0.79022 0.78408 1.18402 1.20511 1.18053 1.20674 0.98556 0.91048 1.08167 1.18758 0.90707 0.94964 1.03132 1.20766 0.98599 0.92490 0.89306 1.61989 1.09367 1.34019 1.23193 1.22415 0.95786 0.91809 1.02064 1.22441 0.89709 0.99821 0.99195 0.93182 0.93189 0.86447 0.85081 0.88351 0.89872 0.87408 0.90264 0.93961 0.95175 0.90416 0.91120 0.92014 0.91567 0.95080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.80 113.37 1.11 1.64 16 2 O -0.32 -10.55 6.50 -89.96 -0.59 -11.14 16 3 C 0.02 0.97 5.43 22.79 0.12 1.09 16 4 C -0.16 -6.67 8.96 22.11 0.20 -6.47 16 5 C -0.22 -10.38 7.12 22.48 0.16 -10.22 16 6 C 0.05 2.49 5.10 -21.28 -0.11 2.39 16 7 C -0.48 -27.91 9.56 23.40 0.22 -27.68 16 8 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 9 C 0.05 2.60 5.40 85.23 0.46 3.06 16 10 N -0.86 -48.33 13.93 21.82 0.30 -48.02 16 11 Si 0.96 44.07 24.52 68.60 1.68 45.76 16 12 H -0.26 -11.11 6.70 99.48 0.67 -10.44 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 14 H -0.26 -12.13 6.87 99.48 0.68 -11.45 16 15 C -0.16 -7.79 9.35 22.48 0.21 -7.58 16 16 C -0.07 -3.09 5.13 -20.03 -0.10 -3.19 16 17 C 0.12 3.95 4.98 85.56 0.43 4.37 16 18 N -0.56 -17.81 5.01 -953.41 -4.78 -22.59 16 19 C 0.03 0.64 9.57 127.69 1.22 1.86 16 20 C 0.04 1.07 8.04 127.69 1.03 2.10 16 21 H 0.05 1.15 7.66 -2.39 -0.02 1.13 16 22 H 0.05 1.15 7.63 -2.39 -0.02 1.13 16 23 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.13 4.51 6.27 -2.91 -0.02 4.49 16 25 H 0.10 4.72 4.73 -2.91 -0.01 4.71 16 26 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 27 H 0.11 4.97 8.02 -2.91 -0.02 4.95 16 28 H 0.08 2.56 7.90 -2.39 -0.02 2.54 16 29 H 0.04 1.39 7.82 -2.39 -0.02 1.37 16 30 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.08 1.61 8.12 -2.38 -0.02 1.59 16 32 H 0.07 1.58 8.12 -2.39 -0.02 1.56 16 33 H 0.06 2.12 5.00 -2.39 -0.01 2.11 16 34 H 0.07 1.70 8.12 -2.38 -0.02 1.68 16 35 H 0.03 0.86 7.70 -2.38 -0.02 0.84 16 Total: -1.00 -62.29 278.82 2.58 -59.70 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.01 Total: 14.93 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 4.95 Total: -38.64 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -4.47 Total: -70.61 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.59 Total: -11.14 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.68 Total: 45.76 kcal Total: -62.29 2.58 -59.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215218337.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.322 kcal (2) G-P(sol) polarization free energy of solvation -62.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds