Wall clock time and date at job start Mon Mar 30 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 N 1.46904 * 109.46930 * 180.02562 * 9 8 7 11 11 C 1.46902 * 110.99819 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46924 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99684 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99890 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00027 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99804 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47310 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47115 * 120.00049 * 16 14 12 19 19 H 1.48507 * 109.47447 * 239.99763 * 16 14 12 20 20 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 21 21 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 22 22 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 23 23 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 25 25 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 26 26 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 27 27 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 28 28 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 29 29 H 1.08995 * 109.47455 * 299.99525 * 9 8 7 30 30 H 1.08993 * 109.47459 * 60.00249 * 9 8 7 31 31 H 1.00903 * 111.00138 * 56.04534 * 10 9 8 32 32 H 1.08996 * 109.47171 * 299.99806 * 11 10 9 33 33 H 1.08999 * 109.46995 * 60.00403 * 11 10 9 34 34 H 0.97005 * 119.99834 * 180.02562 * 15 14 12 35 35 H 1.08006 * 120.02917 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 7 7.5358 2.7042 -1.4449 11 6 8.0605 2.7319 -2.8168 12 6 9.5649 2.8117 -2.7776 13 1 10.0797 2.8395 -1.8286 14 6 10.2840 2.8503 -3.9534 15 7 9.6571 2.8169 -5.1090 16 14 12.1487 2.9499 -3.9049 17 1 12.6066 2.9736 -2.4925 18 1 12.7257 1.7666 -4.5920 19 1 12.5964 4.1882 -4.5918 20 6 3.4311 1.2849 -0.0001 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.2128 2.3203 -0.0106 25 1 1.3339 4.5114 0.0011 26 1 3.7922 4.6381 0.0002 27 1 5.8760 3.5065 0.5126 28 1 5.9718 1.7291 0.5125 29 1 5.7537 1.7175 -1.9574 30 1 5.6579 3.4948 -1.9574 31 1 7.9391 1.9431 -0.9192 32 1 7.7587 1.8244 -3.3396 33 1 7.6637 3.6018 -3.3400 34 1 10.1631 2.8437 -5.9362 35 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225685586.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:10 Heat of formation + Delta-G solvation = -25.364541 kcal Electronic energy + Delta-G solvation = -15494.059713 eV Core-core repulsion = 12877.787434 eV Total energy + Delta-G solvation = -2616.272279 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19274 -37.85255 -35.57160 -33.04867 -31.76683 -30.53480 -28.36774 -27.39716 -25.74190 -22.77273 -22.41688 -21.25066 -20.63811 -17.77172 -16.39593 -16.32493 -16.00922 -15.87111 -14.92932 -14.58873 -14.34066 -13.81444 -13.53004 -13.28804 -12.69453 -12.68914 -12.14711 -11.99396 -11.85038 -11.48086 -11.23666 -10.99298 -10.91639 -10.72939 -10.55605 -10.47516 -9.89312 -9.17416 -8.75602 -8.46422 -8.22149 -7.27665 -6.01038 -4.03013 1.30985 1.44247 3.14273 3.32766 3.39757 3.45145 3.74571 4.44976 4.69203 4.76064 4.91566 4.92915 5.03523 5.22545 5.30587 5.34096 5.34994 5.49446 5.53481 5.69219 5.89440 5.95364 6.08483 6.25318 6.34640 6.42341 6.53557 6.72622 6.77737 7.28419 7.32149 7.45142 7.80874 8.14964 8.41686 8.63836 9.06673 9.61866 11.10182 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.049609 B = 0.003711 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.274306 B = 7542.665066 C = 7730.661767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.124 3.876 4 C -0.218 4.218 5 C -0.081 4.081 6 C -0.152 4.152 7 C -0.031 4.031 8 C -0.081 4.081 9 C 0.066 3.934 10 N -0.691 5.691 11 C 0.193 3.807 12 C -0.513 4.513 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.149 4.149 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.098 0.902 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.019 0.981 30 H 0.065 0.935 31 H 0.328 0.672 32 H -0.014 1.014 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.384 -2.343 11.015 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.080 3.920 4 C -0.237 4.237 5 C -0.099 4.099 6 C -0.170 4.170 7 C -0.032 4.032 8 C -0.119 4.119 9 C -0.064 4.064 10 N -0.322 5.322 11 C 0.066 3.934 12 C -0.552 4.552 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.168 4.168 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.116 0.884 24 H 0.141 0.859 25 H 0.141 0.859 26 H 0.144 0.856 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.144 0.856 32 H 0.004 0.996 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.253 -1.843 10.875 21.327 hybrid contribution 0.464 -0.720 -0.504 0.994 sum -17.788 -2.563 10.372 20.750 Atomic orbital electron populations 1.23017 0.78684 1.03726 1.01223 1.86074 1.21154 1.27166 1.88889 1.19005 0.92306 0.84020 0.96719 1.21153 0.99690 0.92512 1.10347 1.20908 0.94637 0.96818 0.97513 1.21042 0.93585 0.98395 1.03980 1.19803 0.96225 0.91974 0.95158 1.20683 0.89091 1.03437 0.98658 1.21826 0.90857 0.99893 0.93818 1.60686 1.02727 1.50137 1.18623 1.19564 0.95027 0.95760 0.83040 1.21239 0.91229 1.50017 0.92711 0.91862 1.25007 0.98917 0.95391 0.95382 1.69980 1.35529 1.50989 0.97277 0.86419 0.85216 0.77512 0.78122 1.19623 1.21108 1.20999 1.20352 0.91174 0.98478 1.06802 0.92813 0.92735 0.88410 0.85865 0.85938 0.85622 0.89921 0.91112 0.96235 0.91656 0.85563 0.99572 0.95413 0.92977 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.87 10.50 -19.44 -0.20 -4.07 16 3 C 0.12 1.61 6.69 -39.22 -0.26 1.35 16 4 C -0.22 -2.47 9.04 -39.43 -0.36 -2.82 16 5 C -0.08 -0.91 10.04 -39.60 -0.40 -1.30 16 6 C -0.15 -1.92 9.70 -39.56 -0.38 -2.30 16 7 C -0.03 -0.43 5.13 -104.65 -0.54 -0.96 16 8 C -0.08 -1.19 5.60 -27.88 -0.16 -1.34 16 9 C 0.07 1.21 5.67 -3.82 -0.02 1.19 16 10 N -0.69 -15.20 6.49 -115.06 -0.75 -15.95 16 11 C 0.19 5.20 5.44 -4.97 -0.03 5.18 16 12 C -0.51 -14.84 9.32 -34.44 -0.32 -15.16 16 13 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 16 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C -0.15 -2.07 9.64 -39.44 -0.38 -2.45 16 21 H 0.05 0.34 7.67 -51.93 -0.40 -0.05 16 22 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 23 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.12 1.08 6.30 -52.49 -0.33 0.75 16 25 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 26 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 27 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 28 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.33 6.81 8.72 -39.29 -0.34 6.47 16 32 H -0.01 -0.39 8.14 -51.93 -0.42 -0.81 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 300.19 15.07 4.52 4.52 Total: -1.00 -31.83 300.19 -7.90 -39.73 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.24 Total: 1.36 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.95 Total: -15.94 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.01 Total: -42.52 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.20 Total: -4.07 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.83 -7.90 -39.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225685586.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.367 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds