Wall clock time and date at job start Mon Mar 30 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 N 1.46904 * 109.46930 * 180.02562 * 9 8 7 11 11 C 1.46902 * 110.99819 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46924 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99684 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99890 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00027 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99804 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47310 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47115 * 120.00049 * 16 14 12 19 19 H 1.48507 * 109.47447 * 239.99763 * 16 14 12 20 20 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 21 21 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 22 22 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 23 23 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 25 25 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 26 26 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 27 27 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 28 28 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 29 29 H 1.08995 * 109.47455 * 299.99525 * 9 8 7 30 30 H 1.08993 * 109.47459 * 60.00249 * 9 8 7 31 31 H 1.00903 * 111.00138 * 56.04534 * 10 9 8 32 32 H 1.08996 * 109.47171 * 299.99806 * 11 10 9 33 33 H 1.08999 * 109.46995 * 60.00403 * 11 10 9 34 34 H 0.97005 * 119.99834 * 180.02562 * 15 14 12 35 35 H 1.08006 * 120.02917 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 7 7.5358 2.7042 -1.4449 11 6 8.0605 2.7319 -2.8168 12 6 9.5649 2.8117 -2.7776 13 1 10.0797 2.8395 -1.8286 14 6 10.2840 2.8503 -3.9534 15 7 9.6571 2.8169 -5.1090 16 14 12.1487 2.9499 -3.9049 17 1 12.6066 2.9736 -2.4925 18 1 12.7257 1.7666 -4.5920 19 1 12.5964 4.1882 -4.5918 20 6 3.4311 1.2849 -0.0001 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.2128 2.3203 -0.0106 25 1 1.3339 4.5114 0.0011 26 1 3.7922 4.6381 0.0002 27 1 5.8760 3.5065 0.5126 28 1 5.9718 1.7291 0.5125 29 1 5.7537 1.7175 -1.9574 30 1 5.6579 3.4948 -1.9574 31 1 7.9391 1.9431 -0.9192 32 1 7.7587 1.8244 -3.3396 33 1 7.6637 3.6018 -3.3400 34 1 10.1631 2.8437 -5.9362 35 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225685586.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:10 Heat of formation + Delta-G solvation = -46.245048 kcal Electronic energy + Delta-G solvation = -15494.965160 eV Core-core repulsion = 12877.787434 eV Total energy + Delta-G solvation = -2617.177726 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.09157 -38.83312 -37.23258 -34.91038 -33.30128 -31.47735 -29.87163 -28.19741 -27.44718 -24.30396 -23.45929 -23.11651 -21.70766 -18.73376 -18.50168 -17.28710 -16.97226 -16.74324 -16.63804 -16.31622 -15.61670 -15.06728 -14.83074 -14.50545 -14.01834 -13.95526 -13.81445 -13.43857 -12.91070 -12.83985 -12.65258 -12.55109 -12.36547 -12.12242 -11.93953 -11.81700 -11.67115 -11.27349 -10.67690 -9.77527 -9.19560 -9.12872 -8.23207 -6.35035 0.34577 0.49183 1.41946 1.42791 1.57146 2.36827 2.40553 2.77730 3.10035 3.51777 3.87694 3.99641 4.10807 4.24081 4.30037 4.38042 4.39703 4.45332 4.54645 4.63581 4.69675 4.74113 4.94943 5.06941 5.08746 5.18675 5.26369 5.33830 5.49246 5.61036 5.71367 5.83709 6.00097 6.41044 6.46926 6.70209 6.87891 7.36166 8.88916 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.049609 B = 0.003711 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.274306 B = 7542.665066 C = 7730.661767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.113 3.887 4 C -0.215 4.215 5 C -0.079 4.079 6 C -0.163 4.163 7 C -0.046 4.046 8 C -0.066 4.066 9 C 0.070 3.930 10 N -0.688 5.688 11 C 0.206 3.794 12 C -0.536 4.536 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.977 3.023 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.170 4.170 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.117 0.883 24 H 0.152 0.848 25 H 0.153 0.847 26 H 0.134 0.866 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.011 0.989 30 H 0.056 0.944 31 H 0.337 0.663 32 H -0.041 1.041 33 H -0.001 1.001 34 H 0.266 0.734 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.949 -1.980 12.068 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.068 3.932 4 C -0.233 4.233 5 C -0.097 4.097 6 C -0.181 4.181 7 C -0.047 4.047 8 C -0.104 4.104 9 C -0.060 4.060 10 N -0.318 5.318 11 C 0.078 3.922 12 C -0.574 4.574 13 H 0.085 0.915 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.801 3.199 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.189 4.189 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.135 0.865 24 H 0.170 0.830 25 H 0.171 0.829 26 H 0.152 0.848 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.029 0.971 30 H 0.075 0.925 31 H 0.154 0.846 32 H -0.023 1.023 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.842 -1.488 11.954 22.364 hybrid contribution 0.487 -0.863 -0.830 1.293 sum -18.356 -2.351 11.124 21.592 Atomic orbital electron populations 1.23338 0.76396 1.05502 1.02325 1.86048 1.23593 1.27010 1.88798 1.19161 0.92228 0.85046 0.96744 1.21504 1.01133 0.91839 1.08832 1.21278 0.94243 0.98066 0.96071 1.21261 0.94537 0.98283 1.04044 1.19714 0.95505 0.92642 0.96790 1.20492 0.90087 1.04091 0.95713 1.21844 0.88511 0.99004 0.96595 1.60566 1.04950 1.50613 1.15694 1.19230 0.94748 0.93105 0.85110 1.21588 0.92172 1.50478 0.93174 0.91463 1.26020 1.04627 0.94527 0.94795 1.70110 1.37857 1.51498 0.98127 0.85217 0.78206 0.77767 0.78684 1.18454 1.20280 1.20311 1.20442 0.92153 0.98349 1.07980 0.91368 0.91830 0.86507 0.83048 0.82936 0.84779 0.89338 0.90342 0.97113 0.92519 0.84599 1.02334 0.98245 0.92573 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.92 10.50 -92.48 -0.97 -8.89 16 3 C 0.11 2.84 6.69 22.50 0.15 2.99 16 4 C -0.21 -4.36 9.04 22.37 0.20 -4.15 16 5 C -0.08 -1.58 10.04 22.26 0.22 -1.36 16 6 C -0.16 -3.93 9.70 22.28 0.22 -3.71 16 7 C -0.05 -1.26 5.13 -19.88 -0.10 -1.36 16 8 C -0.07 -1.93 5.60 29.85 0.17 -1.76 16 9 C 0.07 2.63 5.67 86.30 0.49 3.12 16 10 N -0.69 -30.77 6.49 -517.94 -3.36 -34.14 16 11 C 0.21 11.50 5.44 85.56 0.47 11.97 16 12 C -0.54 -31.34 9.32 25.60 0.24 -31.10 16 13 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 14 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 15 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 16 Si 0.98 44.85 29.54 68.60 2.03 46.88 16 17 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 20 C -0.17 -4.74 9.64 22.36 0.22 -4.53 16 21 H 0.07 0.69 7.67 -2.39 -0.02 0.67 16 22 H 0.06 0.71 7.65 -2.39 -0.02 0.69 16 23 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.15 2.13 6.30 -2.91 -0.02 2.11 16 25 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 26 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 27 H 0.09 2.47 8.09 -2.39 -0.02 2.45 16 28 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 29 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.34 14.08 8.72 -89.69 -0.78 13.30 16 32 H -0.04 -2.47 8.14 -2.39 -0.02 -2.49 16 33 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 34 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 35 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -68.85 300.19 2.10 -66.75 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.28 Total: 15.02 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 3.84 Total: -28.18 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -3.08 Total: -91.58 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.97 Total: -8.89 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -68.85 2.10 -66.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225685586.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.501 kcal (2) G-P(sol) polarization free energy of solvation -68.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds