Wall clock time and date at job start Mon Mar 30 2020 03:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99869 * 2 1 4 4 H 1.48509 * 109.46635 * 269.99617 * 3 2 1 5 5 H 1.48495 * 109.47091 * 29.98942 * 3 2 1 6 6 H 1.48496 * 109.47237 * 149.99489 * 3 2 1 7 7 C 1.37882 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00185 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99612 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46826 * 180.02562 * 9 7 2 11 11 N 1.40402 * 126.21917 * 90.02494 * 10 9 7 12 12 C 1.31185 * 108.23234 * 179.97438 * 11 10 9 13 13 C 1.39343 * 107.82451 * 359.97438 * 12 11 10 14 14 C 1.34374 * 126.22271 * 270.00041 * 10 9 7 15 15 C 1.51944 * 127.28512 * 0.06414 * 14 10 9 16 16 C 1.53616 * 107.01941 * 245.25196 * 15 14 10 17 17 C 1.50848 * 111.08221 * 280.14730 * 16 15 14 18 18 C 1.50843 * 116.70651 * 73.01945 * 17 16 15 19 19 C 1.51955 * 127.16820 * 179.97438 * 13 12 11 20 20 H 1.09007 * 109.94851 * 234.27111 * 19 13 12 21 21 N 1.46906 * 109.94438 * 355.43091 * 19 13 12 22 22 H 0.97002 * 120.00278 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47600 * 60.00229 * 9 7 2 24 24 H 1.09010 * 109.47201 * 299.99914 * 9 7 2 25 25 H 1.07997 * 126.08825 * 180.02562 * 12 11 10 26 26 H 1.09009 * 109.94448 * 4.62786 * 15 14 10 27 27 H 1.08994 * 109.94346 * 125.78661 * 15 14 10 28 28 H 1.09000 * 109.15837 * 40.56709 * 16 15 14 29 29 H 1.09000 * 109.15175 * 159.74256 * 16 15 14 30 30 H 1.09000 * 108.00411 * 194.85363 * 17 16 15 31 31 H 1.08999 * 108.01160 * 311.25440 * 17 16 15 32 32 H 1.08997 * 109.15361 * 166.53026 * 18 17 16 33 33 H 1.09003 * 109.12626 * 47.38041 * 18 17 16 34 34 H 1.00897 * 110.99706 * 299.99878 * 21 19 13 35 35 H 1.00899 * 110.99484 * 63.95835 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4464 2.6527 0.6998 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 7 4.2774 -3.3569 -1.1318 12 6 4.6935 -4.5332 -0.7268 13 6 4.6920 -4.5297 0.6666 14 6 4.2642 -3.3240 1.0850 15 6 4.1185 -2.9181 2.5419 16 6 5.5296 -2.9080 3.1491 17 6 5.9788 -4.3043 3.5013 18 6 6.3459 -5.2087 2.3512 19 6 5.0944 -5.6691 1.5880 20 1 4.2876 -5.8830 2.2892 21 7 5.4017 -6.8684 0.7972 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 4.9861 -5.3573 -1.3605 26 1 3.6780 -1.9233 2.6085 27 1 3.4914 -3.6381 3.0675 28 1 6.2260 -2.4792 2.4284 29 1 5.5266 -2.2952 4.0505 30 1 6.8459 -4.2239 4.1569 31 1 5.1779 -4.7842 4.0638 32 1 6.8712 -6.0824 2.7369 33 1 7.0032 -4.6698 1.6688 34 1 4.6005 -7.1611 0.2583 35 1 6.2013 -6.7136 0.2016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230185727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:50 Heat of formation + Delta-G solvation = 58.886238 kcal Electronic energy + Delta-G solvation = -16973.295583 eV Core-core repulsion = 14392.969443 eV Total energy + Delta-G solvation = -2580.326140 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.93317 -36.98841 -34.59247 -33.34827 -31.56566 -30.55117 -28.65498 -27.46459 -24.47050 -23.15983 -22.43302 -20.50276 -19.48491 -18.46214 -17.15196 -16.31640 -15.56718 -14.84420 -14.58798 -14.35045 -14.11841 -13.68729 -13.44071 -13.32699 -12.62985 -12.42898 -12.05651 -11.78061 -11.58532 -11.14612 -11.07798 -10.85338 -10.74487 -10.51749 -10.49953 -10.28101 -9.80515 -9.74628 -8.83147 -8.64655 -8.46047 -7.59444 -6.31066 -4.34704 2.66697 3.11471 3.17221 3.18870 3.34997 3.43798 4.16957 4.69763 4.85621 4.96411 4.96485 5.16039 5.28673 5.40388 5.53372 5.62389 5.66827 5.84058 5.90603 6.01812 6.15462 6.19504 6.23907 6.33072 6.33771 6.44522 6.50837 6.65958 6.80076 7.23161 7.28054 7.36089 7.59052 7.80273 8.26113 8.48540 8.73539 9.23931 10.81405 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033481 B = 0.007486 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.103229 B = 3739.557896 C = 4148.311085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.080 3.920 3 Si 0.873 3.127 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.229 3.771 10 N -0.320 5.320 11 N -0.296 5.296 12 C 0.025 3.975 13 C -0.301 4.301 14 C 0.103 3.897 15 C -0.057 4.057 16 C -0.110 4.110 17 C -0.113 4.113 18 C -0.106 4.106 19 C 0.177 3.823 20 H 0.080 0.920 21 N -0.840 5.840 22 H 0.269 0.731 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.165 0.835 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.341 0.659 35 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.767 -7.259 6.122 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.109 3.891 10 N -0.099 5.099 11 N -0.119 5.119 12 C -0.159 4.159 13 C -0.315 4.315 14 C -0.029 4.029 15 C -0.096 4.096 16 C -0.148 4.148 17 C -0.151 4.151 18 C -0.144 4.144 19 C 0.064 3.936 20 H 0.098 0.902 21 N -0.367 5.367 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.182 0.818 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.402 -6.590 5.786 14.384 hybrid contribution 0.120 1.117 -0.401 1.193 sum 11.521 -5.473 5.385 13.845 Atomic orbital electron populations 1.69867 1.06165 1.27456 1.48705 1.24809 0.94835 0.98830 0.93994 0.86896 0.80261 0.83718 0.79188 1.19576 1.20431 1.18924 1.21150 0.87930 0.95534 1.53443 0.90176 1.19989 0.96628 0.73929 0.98523 1.48815 1.46207 1.12687 1.02224 1.77523 1.21292 1.03710 1.09338 1.23228 1.02345 0.96419 0.93907 1.20612 1.18569 0.98013 0.94301 1.20728 0.99239 0.91968 0.91004 1.20691 0.97266 1.03140 0.88458 1.21199 0.96087 0.96985 1.00533 1.20652 1.01078 0.95320 0.98041 1.21271 0.97369 0.98654 0.97155 1.20040 0.96200 0.84654 0.92695 0.90247 1.59056 1.10409 1.34396 1.32791 0.92055 0.93477 0.93714 0.81783 0.89769 0.89644 0.92103 0.91429 0.92637 0.92295 0.91440 0.92404 0.84617 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 20.16 27.47 -169.99 -4.67 15.49 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 7 C -0.54 -15.21 9.94 -34.44 -0.34 -15.55 16 8 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.23 5.50 4.96 -5.19 -0.03 5.48 16 10 N -0.32 -7.26 3.59 -58.18 -0.21 -7.47 16 11 N -0.30 -6.63 12.61 30.57 0.39 -6.24 16 12 C 0.02 0.45 11.25 -17.42 -0.20 0.26 16 13 C -0.30 -5.15 5.12 -104.88 -0.54 -5.69 16 14 C 0.10 1.98 6.03 -82.15 -0.50 1.49 16 15 C -0.06 -0.91 5.85 -26.95 -0.16 -1.07 16 16 C -0.11 -1.42 5.62 -27.49 -0.15 -1.58 16 17 C -0.11 -1.28 5.07 -28.89 -0.15 -1.43 16 18 C -0.11 -1.29 5.18 -27.48 -0.14 -1.43 16 19 C 0.18 2.40 3.29 -67.91 -0.22 2.18 16 20 H 0.08 1.12 7.88 -51.92 -0.41 0.71 16 21 N -0.84 -9.83 8.85 -4.83 -0.04 -9.87 16 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.05 1.06 6.32 -51.93 -0.33 0.73 16 24 H 0.04 1.08 7.57 -51.92 -0.39 0.69 16 25 H 0.17 2.36 7.96 -52.49 -0.42 1.95 16 26 H 0.08 1.46 7.04 -51.92 -0.37 1.09 16 27 H 0.09 1.27 7.87 -51.93 -0.41 0.86 16 28 H 0.06 0.85 7.90 -51.93 -0.41 0.44 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 32 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.06 0.75 7.90 -51.93 -0.41 0.34 16 34 H 0.34 3.86 8.92 -39.29 -0.35 3.51 16 35 H 0.34 3.60 8.84 -39.29 -0.35 3.25 16 LS Contribution 281.65 15.07 4.24 4.24 Total: -1.00 -30.72 281.65 -7.13 -37.85 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.10 Total: 6.69 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.52 Total: -15.21 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.91 Total: -49.07 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.72 -7.13 -37.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230185727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.740 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds