Wall clock time and date at job start Mon Mar 30 2020 03:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99869 * 2 1 4 4 H 1.48509 * 109.46635 * 269.99617 * 3 2 1 5 5 H 1.48495 * 109.47091 * 29.98942 * 3 2 1 6 6 H 1.48496 * 109.47237 * 149.99489 * 3 2 1 7 7 C 1.37882 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00185 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99612 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46826 * 180.02562 * 9 7 2 11 11 N 1.40402 * 126.21917 * 90.02494 * 10 9 7 12 12 C 1.31185 * 108.23234 * 179.97438 * 11 10 9 13 13 C 1.39343 * 107.82451 * 359.97438 * 12 11 10 14 14 C 1.34374 * 126.22271 * 270.00041 * 10 9 7 15 15 C 1.51944 * 127.28512 * 0.06414 * 14 10 9 16 16 C 1.53616 * 107.01941 * 245.25196 * 15 14 10 17 17 C 1.50848 * 111.08221 * 280.14730 * 16 15 14 18 18 C 1.50843 * 116.70651 * 73.01945 * 17 16 15 19 19 C 1.51955 * 127.16820 * 179.97438 * 13 12 11 20 20 H 1.09007 * 109.94851 * 234.27111 * 19 13 12 21 21 N 1.46906 * 109.94438 * 355.43091 * 19 13 12 22 22 H 0.97002 * 120.00278 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47600 * 60.00229 * 9 7 2 24 24 H 1.09010 * 109.47201 * 299.99914 * 9 7 2 25 25 H 1.07997 * 126.08825 * 180.02562 * 12 11 10 26 26 H 1.09009 * 109.94448 * 4.62786 * 15 14 10 27 27 H 1.08994 * 109.94346 * 125.78661 * 15 14 10 28 28 H 1.09000 * 109.15837 * 40.56709 * 16 15 14 29 29 H 1.09000 * 109.15175 * 159.74256 * 16 15 14 30 30 H 1.09000 * 108.00411 * 194.85363 * 17 16 15 31 31 H 1.08999 * 108.01160 * 311.25440 * 17 16 15 32 32 H 1.08997 * 109.15361 * 166.53026 * 18 17 16 33 33 H 1.09003 * 109.12626 * 47.38041 * 18 17 16 34 34 H 1.00897 * 110.99706 * 299.99878 * 21 19 13 35 35 H 1.00899 * 110.99484 * 63.95835 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4464 2.6527 0.6998 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 7 4.2774 -3.3569 -1.1318 12 6 4.6935 -4.5332 -0.7268 13 6 4.6920 -4.5297 0.6666 14 6 4.2642 -3.3240 1.0850 15 6 4.1185 -2.9181 2.5419 16 6 5.5296 -2.9080 3.1491 17 6 5.9788 -4.3043 3.5013 18 6 6.3459 -5.2087 2.3512 19 6 5.0944 -5.6691 1.5880 20 1 4.2876 -5.8830 2.2892 21 7 5.4017 -6.8684 0.7972 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 4.9861 -5.3573 -1.3605 26 1 3.6780 -1.9233 2.6085 27 1 3.4914 -3.6381 3.0675 28 1 6.2260 -2.4792 2.4284 29 1 5.5266 -2.2952 4.0505 30 1 6.8459 -4.2239 4.1569 31 1 5.1779 -4.7842 4.0638 32 1 6.8712 -6.0824 2.7369 33 1 7.0032 -4.6698 1.6688 34 1 4.6005 -7.1611 0.2583 35 1 6.2013 -6.7136 0.2016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230185727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:50 Heat of formation + Delta-G solvation = 36.748432 kcal Electronic energy + Delta-G solvation = -16974.255550 eV Core-core repulsion = 14392.969443 eV Total energy + Delta-G solvation = -2581.286107 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.39803 -38.12669 -36.02189 -35.08647 -33.30773 -31.83138 -29.83566 -29.27420 -25.68170 -24.93820 -23.75817 -21.67661 -20.86864 -19.90333 -19.28216 -17.78447 -16.56637 -16.42862 -15.93088 -15.84185 -15.43742 -15.08938 -14.74456 -14.56209 -14.47136 -13.86726 -13.60805 -13.25228 -12.84844 -12.66721 -12.63134 -12.22522 -12.18761 -11.88440 -11.80135 -11.57731 -11.45702 -11.15485 -10.95875 -10.09754 -9.67392 -9.06554 -8.46562 -6.58079 1.13241 1.28965 1.31696 1.41124 1.83951 1.94813 2.20750 2.85596 3.64402 3.74902 3.84680 3.93326 4.09220 4.23518 4.39425 4.43901 4.46144 4.49441 4.61564 4.72178 4.81989 4.99879 5.10467 5.17227 5.24270 5.27099 5.30843 5.36046 5.43246 5.56840 5.82011 5.96882 6.30984 6.37741 6.46260 6.68646 6.95432 7.06413 8.70166 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033481 B = 0.007486 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.103229 B = 3739.557896 C = 4148.311085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.237 1.237 7 C -0.552 4.552 8 H 0.022 0.978 9 C 0.240 3.760 10 N -0.351 5.351 11 N -0.349 5.349 12 C 0.033 3.967 13 C -0.293 4.293 14 C 0.086 3.914 15 C -0.058 4.058 16 C -0.101 4.101 17 C -0.114 4.114 18 C -0.100 4.100 19 C 0.182 3.818 20 H 0.077 0.923 21 N -0.832 5.832 22 H 0.275 0.725 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.200 0.800 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.345 0.655 35 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.196 -7.485 7.482 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.160 1.160 7 C -0.591 4.591 8 H 0.041 0.959 9 C 0.120 3.880 10 N -0.131 5.131 11 N -0.172 5.172 12 C -0.151 4.151 13 C -0.307 4.307 14 C -0.045 4.045 15 C -0.097 4.097 16 C -0.139 4.139 17 C -0.151 4.151 18 C -0.138 4.138 19 C 0.069 3.931 20 H 0.095 0.905 21 N -0.360 5.360 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.217 0.783 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.157 0.843 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.854 -6.857 7.156 17.034 hybrid contribution -0.694 0.999 -0.851 1.484 sum 13.160 -5.858 6.305 15.725 Atomic orbital electron populations 1.70023 1.08363 1.29004 1.49939 1.25836 0.95720 1.03279 0.92916 0.85689 0.79787 0.77688 0.79730 1.19057 1.19466 1.16033 1.21233 0.90285 0.93594 1.53945 0.95914 1.19669 0.93666 0.75735 0.98951 1.48709 1.48398 1.12654 1.03348 1.77439 1.23720 1.05531 1.10464 1.23876 1.00188 0.95911 0.95104 1.21136 1.16808 0.98297 0.94411 1.21471 0.98809 0.92480 0.91729 1.20842 0.99664 1.02190 0.87027 1.21172 0.93311 0.98647 1.00772 1.20657 1.02375 0.94010 0.98107 1.21227 0.96235 0.99325 0.97026 1.20114 0.97005 0.83803 0.92204 0.90465 1.59053 1.10863 1.32964 1.33107 0.91612 0.91627 0.94009 0.78337 0.91663 0.88705 0.93361 0.89194 0.90240 0.91467 0.89743 0.93364 0.84277 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 2 C 0.02 1.29 5.47 84.66 0.46 1.75 16 3 Si 0.95 41.54 27.47 68.60 1.88 43.42 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.24 -9.26 6.54 99.48 0.65 -8.60 16 7 C -0.55 -32.34 9.94 25.60 0.25 -32.09 16 8 H 0.02 1.54 8.06 -2.92 -0.02 1.51 16 9 C 0.24 11.76 4.96 85.63 0.43 12.19 16 10 N -0.35 -16.26 3.59 -337.98 -1.21 -17.47 16 11 N -0.35 -15.90 12.61 -57.19 -0.72 -16.62 16 12 C 0.03 1.18 11.25 85.06 0.96 2.13 16 13 C -0.29 -9.72 5.12 -20.03 -0.10 -9.82 16 14 C 0.09 3.30 6.03 41.73 0.25 3.55 16 15 C -0.06 -1.83 5.85 30.45 0.18 -1.66 16 16 C -0.10 -2.37 5.62 30.10 0.17 -2.20 16 17 C -0.11 -2.19 5.07 29.19 0.15 -2.04 16 18 C -0.10 -2.10 5.18 30.11 0.16 -1.94 16 19 C 0.18 4.51 3.29 44.79 0.15 4.65 16 20 H 0.08 2.00 7.88 -2.38 -0.02 1.98 16 21 N -0.83 -17.18 8.85 -169.19 -1.50 -18.67 16 22 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 23 H 0.07 2.92 6.32 -2.39 -0.02 2.91 16 24 H 0.04 2.04 7.57 -2.38 -0.02 2.02 16 25 H 0.20 5.34 7.96 -2.91 -0.02 5.31 16 26 H 0.06 2.27 7.04 -2.38 -0.02 2.25 16 27 H 0.09 2.75 7.87 -2.39 -0.02 2.73 16 28 H 0.05 1.26 7.90 -2.39 -0.02 1.24 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.22 7.65 -2.39 -0.02 1.20 16 32 H 0.08 1.53 8.13 -2.39 -0.02 1.51 16 33 H 0.05 1.12 7.90 -2.39 -0.02 1.10 16 34 H 0.34 6.93 8.92 -89.70 -0.80 6.13 16 35 H 0.34 6.32 8.84 -89.69 -0.79 5.53 16 Total: -1.00 -70.04 281.65 1.25 -68.79 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -0.55 Total: 23.13 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 3.05 Total: -25.48 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -3.13 Total: -109.86 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.88 Total: 43.42 kcal Total: -70.04 1.25 -68.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230185727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.539 kcal (2) G-P(sol) polarization free energy of solvation -70.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds