Wall clock time and date at job start Mon Mar 30 2020 03:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30320 * 125.97403 * 2 1 4 4 N 1.39882 * 109.22950 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.67727 * 179.97438 * 4 3 2 6 6 H 1.08992 * 110.29136 * 179.32405 * 5 4 3 7 7 C 1.54262 * 110.31872 * 301.45219 * 5 4 3 8 8 C 1.54385 * 105.06118 * 118.89799 * 7 5 4 9 9 N 1.48558 * 104.59379 * 23.84590 * 8 7 5 10 10 C 1.48724 * 104.29128 * 320.57665 * 9 8 7 11 11 C 1.34502 * 108.64669 * 0.23915 * 4 3 2 12 12 C 1.50704 * 126.40262 * 179.71856 * 11 4 3 13 13 C 1.39280 * 107.18848 * 359.62552 * 11 4 3 14 14 C 1.41596 * 126.55442 * 180.14520 * 13 11 4 15 15 H 1.07996 * 120.00089 * 314.45723 * 14 13 11 16 16 C 1.39690 * 120.00122 * 134.46393 * 14 13 11 17 17 N 1.31027 * 120.00239 * 153.23466 * 16 14 13 18 18 Si 1.86798 * 119.99970 * 333.23980 * 16 14 13 19 19 H 1.48498 * 109.47561 * 95.47315 * 18 16 14 20 20 H 1.48507 * 109.47473 * 215.47319 * 18 16 14 21 21 H 1.48501 * 109.47258 * 335.47277 * 18 16 14 22 22 H 1.09002 * 109.47212 * 83.88503 * 1 2 3 23 23 H 1.09001 * 109.47233 * 203.87942 * 1 2 3 24 24 H 1.08996 * 109.47525 * 323.88295 * 1 2 3 25 25 H 1.09008 * 110.32069 * 237.78968 * 7 5 4 26 26 H 1.08998 * 110.32682 * 359.89583 * 7 5 4 27 27 H 1.08996 * 110.41100 * 142.62854 * 8 7 5 28 28 H 1.09002 * 110.40518 * 265.06877 * 8 7 5 29 29 H 1.00903 * 110.99979 * 80.07541 * 9 8 7 30 30 H 1.08997 * 110.38539 * 280.64115 * 10 9 8 31 31 H 1.08994 * 110.50502 * 158.14419 * 10 9 8 32 32 H 1.08998 * 109.46903 * 90.00656 * 12 11 4 33 33 H 1.09001 * 109.46907 * 210.00103 * 12 11 4 34 34 H 1.08998 * 109.47369 * 330.00362 * 12 11 4 35 35 H 0.97000 * 120.00535 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2725 1.0547 0.0000 4 7 3.6120 0.6517 0.0006 5 6 4.7731 1.5451 0.0002 6 1 5.6960 0.9655 0.0129 7 6 4.7375 2.4691 -1.2345 8 6 4.6641 3.9010 -0.6620 9 7 5.2414 3.7888 0.7022 10 6 4.7193 2.4945 1.2164 11 6 3.6566 -0.6926 -0.0044 12 6 4.8986 -1.5462 -0.0116 13 6 2.3405 -1.1482 0.0006 14 6 1.9156 -2.4989 0.0008 15 1 2.3756 -3.2098 -0.6695 16 6 0.9012 -2.9119 0.8679 17 7 0.1498 -3.9387 0.5554 18 14 0.6159 -2.0000 2.4731 19 1 -0.4563 -0.9900 2.2850 20 1 0.2074 -2.9654 3.5251 21 1 1.8699 -1.3197 2.8856 22 1 -0.3634 0.1095 -1.0218 23 1 -0.3634 -0.9397 0.4160 24 1 -0.3634 0.8301 0.6057 25 1 5.6440 2.3443 -1.8269 26 1 3.8573 2.2567 -1.8412 27 1 5.2564 4.5845 -1.2704 28 1 3.6285 4.2369 -0.6101 29 1 6.2498 3.7827 0.6688 30 1 3.6926 2.6102 1.5634 31 1 5.3531 2.1193 2.0198 32 1 5.2014 -1.7557 1.0144 33 1 4.6922 -2.4836 -0.5281 34 1 5.7005 -1.0167 -0.5261 35 1 -0.5548 -4.2253 1.1573 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257869945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:35 Heat of formation + Delta-G solvation = 74.193172 kcal Electronic energy + Delta-G solvation = -17078.604362 eV Core-core repulsion = 14498.941980 eV Total energy + Delta-G solvation = -2579.662382 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.09716 -38.05655 -33.52736 -32.46015 -30.90515 -29.41567 -28.78295 -27.47319 -25.76675 -23.71178 -21.96608 -20.60919 -19.16836 -17.93356 -16.97903 -16.64017 -15.51522 -14.72341 -14.46847 -13.88774 -13.65733 -13.04883 -12.76898 -12.72836 -12.41128 -12.27213 -12.06011 -11.88080 -11.78660 -11.40370 -11.27118 -10.86398 -10.76851 -10.72814 -10.49898 -10.09713 -9.94678 -9.12316 -8.88828 -8.69514 -7.86694 -6.97438 -6.46616 -4.00000 2.88241 3.26683 3.34218 3.40451 3.46423 3.99187 4.27424 4.30312 4.72283 4.85823 5.01972 5.20691 5.26972 5.36095 5.50490 5.81845 5.84826 5.91225 6.01217 6.01427 6.14860 6.17059 6.29970 6.35143 6.52785 6.53913 6.67772 6.78096 7.17747 7.26391 7.42627 7.54006 7.84810 8.29652 8.65994 8.96692 9.04021 9.30140 10.61004 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035850 B = 0.008133 C = 0.007718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.854892 B = 3441.971281 C = 3626.780780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.028 3.972 3 N -0.314 5.314 4 N -0.372 5.372 5 C 0.140 3.860 6 H 0.094 0.906 7 C -0.165 4.165 8 C 0.045 3.955 9 N -0.666 5.666 10 C 0.034 3.966 11 C -0.047 4.047 12 C -0.055 4.055 13 C -0.027 4.027 14 C -0.467 4.467 15 H 0.079 0.921 16 C 0.097 3.903 17 N -0.844 5.844 18 Si 0.871 3.129 19 H -0.263 1.263 20 H -0.290 1.290 21 H -0.262 1.262 22 H 0.062 0.938 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.333 0.667 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.404 9.828 -0.427 12.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.138 4.138 3 N -0.137 5.137 4 N -0.159 5.159 5 C 0.034 3.966 6 H 0.112 0.888 7 C -0.205 4.205 8 C -0.085 4.085 9 N -0.292 5.292 10 C -0.096 4.096 11 C -0.169 4.169 12 C -0.113 4.113 13 C -0.037 4.037 14 C -0.502 4.502 15 H 0.097 0.903 16 C -0.114 4.114 17 N -0.474 5.474 18 Si 0.697 3.303 19 H -0.188 1.188 20 H -0.216 1.216 21 H -0.186 1.186 22 H 0.081 0.919 23 H 0.099 0.901 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.147 0.853 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.902 11.438 -0.012 13.902 hybrid contribution 0.410 -1.323 0.202 1.399 sum 8.311 10.115 0.190 13.093 Atomic orbital electron populations 1.20211 0.88445 1.02284 1.01469 1.22590 0.95837 0.91886 1.03495 1.76419 0.86551 1.23856 1.26914 1.47402 1.03452 1.03513 1.61517 1.22310 0.86823 0.91405 0.96030 0.88793 1.23244 1.03192 0.96104 0.97962 1.22964 1.01505 0.95316 0.88666 1.63365 1.12391 1.32843 1.20592 1.23450 1.03032 0.87169 0.95997 1.21463 0.97249 0.83124 1.15102 1.19930 0.92020 0.98407 1.00985 1.17867 0.88098 0.94032 1.03733 1.18154 1.18380 0.92309 1.21316 0.90278 1.25504 0.93208 0.94280 0.98414 1.69882 1.15533 1.26432 1.35560 0.87111 0.80103 0.79941 0.83191 1.18818 1.21641 1.18609 0.91896 0.90070 0.93007 0.91348 0.89638 0.90960 0.89832 0.85258 0.88642 0.90614 0.92589 0.90534 0.94177 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.03 36.00 0.33 -1.13 16 2 C 0.03 0.69 6.25 -81.84 -0.51 0.18 16 3 N -0.31 -7.26 11.89 33.99 0.40 -6.85 16 4 N -0.37 -7.77 3.23 -48.45 -0.16 -7.93 16 5 C 0.14 2.22 3.81 -66.54 -0.25 1.97 16 6 H 0.09 1.32 6.72 -51.93 -0.35 0.97 16 7 C -0.17 -2.28 6.73 -25.35 -0.17 -2.45 16 8 C 0.05 0.56 7.47 -2.18 -0.02 0.54 16 9 N -0.67 -8.31 7.63 -109.53 -0.84 -9.14 16 10 C 0.03 0.50 7.17 -2.09 -0.01 0.49 16 11 C -0.05 -1.07 7.06 -81.03 -0.57 -1.65 16 12 C -0.05 -1.02 9.77 36.01 0.35 -0.67 16 13 C -0.03 -0.70 4.62 -106.84 -0.49 -1.19 16 14 C -0.47 -13.01 9.30 -37.76 -0.35 -13.37 16 15 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 16 C 0.10 2.67 4.45 -17.35 -0.08 2.59 16 17 N -0.84 -23.74 13.94 55.54 0.77 -22.97 16 18 Si 0.87 21.37 24.94 -169.99 -4.24 17.13 16 19 H -0.26 -6.13 5.99 56.52 0.34 -5.79 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.26 -6.73 7.11 56.52 0.40 -6.33 16 22 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 23 H 0.08 1.92 3.97 -51.93 -0.21 1.71 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 26 H 0.08 1.41 7.86 -51.93 -0.41 1.00 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.33 3.32 8.92 -39.29 -0.35 2.96 16 30 H 0.10 1.71 7.70 -51.93 -0.40 1.31 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.46 7.98 -51.93 -0.41 1.05 16 34 H 0.04 0.62 7.12 -51.93 -0.37 0.25 16 35 H 0.27 7.08 8.30 -40.82 -0.34 6.74 16 LS Contribution 281.10 15.07 4.24 4.24 Total: -1.00 -30.27 281.10 -6.68 -36.95 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.08 Total: 3.28 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -1.78 Total: -14.70 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.19 Total: -46.89 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.24 Total: 17.13 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.27 -6.68 -36.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257869945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.139 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds