Wall clock time and date at job start Mon Mar 30 2020 03:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38115 * 120.40246 * 2 1 4 4 C 1.39625 * 118.33717 * 179.97438 * 3 2 1 5 5 N 1.38536 * 120.53451 * 179.72367 * 4 3 2 6 6 C 1.46502 * 120.00071 * 184.99681 * 5 4 3 7 7 C 1.46502 * 120.00271 * 5.00410 * 5 4 3 8 8 C 1.53004 * 109.47200 * 89.99239 * 7 5 4 9 9 C 1.50696 * 109.47099 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00141 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00103 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99764 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00289 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46519 * 89.99932 * 13 11 9 15 15 H 1.48495 * 109.47398 * 209.99694 * 13 11 9 16 16 H 1.48498 * 109.47120 * 330.00310 * 13 11 9 17 17 N 1.32995 * 118.93597 * 0.02562 * 4 3 2 18 18 C 1.31749 * 120.68414 * 359.97438 * 17 4 3 19 19 C 1.50704 * 119.08173 * 180.02562 * 18 17 4 20 20 N 1.31793 * 121.83541 * 0.02562 * 18 17 4 21 21 H 1.09000 * 109.47065 * 89.99670 * 1 2 3 22 22 H 1.09002 * 109.46841 * 209.99924 * 1 2 3 23 23 H 1.08999 * 109.47234 * 329.99964 * 1 2 3 24 24 H 1.07997 * 120.83191 * 359.95808 * 3 2 1 25 25 H 1.09001 * 109.46521 * 90.00466 * 6 5 4 26 26 H 1.09004 * 109.47521 * 210.00163 * 6 5 4 27 27 H 1.08997 * 109.47304 * 330.00685 * 6 5 4 28 28 H 1.08997 * 109.47454 * 209.99776 * 7 5 4 29 29 H 1.09000 * 109.46452 * 330.00305 * 7 5 4 30 30 H 1.08997 * 109.47356 * 300.00597 * 8 7 5 31 31 H 1.09004 * 109.46892 * 60.00449 * 8 7 5 32 32 H 0.97003 * 119.99976 * 180.02562 * 12 11 9 33 33 H 1.09004 * 109.47001 * 269.99672 * 19 18 17 34 34 H 1.08990 * 109.47017 * 30.00157 * 19 18 17 35 35 H 1.09002 * 109.47100 * 150.00560 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6013 1.1409 0.0005 5 7 4.3477 2.3080 -0.0052 6 6 5.8071 2.2436 -0.1151 7 6 3.6776 3.6066 0.0988 8 6 3.5498 3.9981 1.5724 9 6 2.8600 5.3336 1.6793 10 1 2.5439 5.8513 0.7857 11 6 2.6324 5.8948 2.9180 12 7 3.0178 5.2647 4.0062 13 14 1.7779 7.5506 3.0506 14 1 0.3107 7.3438 3.1501 15 1 2.2609 8.2613 4.2617 16 1 2.0827 8.3628 1.8454 17 7 4.2024 -0.0454 0.0005 18 6 3.4956 -1.1573 0.0005 19 6 4.2140 -2.4820 0.0011 20 7 2.1777 -1.1433 0.0000 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6862 2.1379 -0.0007 25 1 6.0938 2.2708 -1.1663 26 1 6.2486 3.0944 0.4040 27 1 6.1649 1.3177 0.3353 28 1 4.2624 4.3605 -0.4281 29 1 2.6850 3.5399 -0.3467 30 1 2.9650 3.2442 2.0992 31 1 4.5424 4.0648 2.0179 32 1 2.8573 5.6593 4.8777 33 1 4.3876 -2.8017 -1.0265 34 1 5.1693 -2.3770 0.5152 35 1 3.6047 -3.2256 0.5148 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259278066.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:04 Heat of formation + Delta-G solvation = 21.035116 kcal Electronic energy + Delta-G solvation = -16333.867714 eV Core-core repulsion = 13751.900226 eV Total energy + Delta-G solvation = -2581.967488 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.93448 -38.52072 -35.52516 -35.07627 -33.34538 -31.70662 -29.97371 -29.34911 -27.38048 -26.30491 -23.83809 -22.77056 -21.57180 -18.71128 -18.69380 -17.75492 -16.68814 -16.37003 -16.10841 -15.58427 -15.30693 -15.08739 -14.40685 -14.25140 -14.15957 -13.81789 -13.39947 -13.28896 -13.16508 -13.00146 -12.97458 -12.84014 -12.57109 -12.01596 -11.98218 -11.57309 -11.48084 -11.32060 -10.60726 -10.44674 -10.14343 -8.81219 -8.22583 -6.36291 0.13670 0.42496 1.41635 1.42615 1.53766 1.89519 2.40920 2.89594 3.11331 3.18500 3.33677 3.76437 4.18434 4.23492 4.38088 4.41313 4.47547 4.60130 4.73209 4.74399 4.75577 4.79845 4.83250 4.88597 4.96593 5.00676 5.19292 5.37146 5.45445 5.55321 5.68465 5.85048 6.12986 6.33201 6.47262 6.81255 7.34377 7.36556 8.88911 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029259 B = 0.006123 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.729431 B = 4571.911611 C = 5099.792612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.193 3.807 3 C -0.315 4.315 4 C 0.427 3.573 5 N -0.599 5.599 6 C 0.097 3.903 7 C 0.138 3.862 8 C 0.022 3.978 9 C -0.540 4.540 10 H 0.072 0.928 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.968 3.032 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.258 1.258 17 N -0.601 5.601 18 C 0.340 3.660 19 C -0.074 4.074 20 N -0.582 5.582 21 H 0.101 0.899 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.142 0.858 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.077 0.923 30 H -0.018 1.018 31 H -0.011 1.011 32 H 0.263 0.737 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.489 -9.826 -9.845 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.051 3.949 3 C -0.343 4.343 4 C 0.185 3.815 5 N -0.310 5.310 6 C -0.045 4.045 7 C 0.016 3.984 8 C -0.017 4.017 9 C -0.578 4.578 10 H 0.090 0.910 11 C -0.196 4.196 12 N -0.575 5.575 13 Si 0.792 3.208 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.181 1.181 17 N -0.328 5.328 18 C 0.071 3.929 19 C -0.132 4.132 20 N -0.304 5.304 21 H 0.120 0.880 22 H 0.106 0.894 23 H 0.102 0.898 24 H 0.159 0.841 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.001 0.999 31 H 0.008 0.992 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.101 -10.437 -9.683 14.237 hybrid contribution -0.566 1.805 0.704 2.018 sum -0.465 -8.632 -8.979 12.464 Atomic orbital electron populations 1.20802 0.85704 1.04397 1.04611 1.21897 0.98791 0.87118 0.87072 1.22194 0.93832 1.01563 1.16686 1.18829 0.88926 0.86936 0.86845 1.46816 1.07001 1.02900 1.74279 1.21662 0.78056 1.02947 1.01820 1.21700 0.97593 0.81352 0.97766 1.19268 0.95038 0.95233 0.92120 1.21533 1.38433 1.04715 0.93139 0.90974 1.25996 0.96334 1.01866 0.95433 1.70132 1.48192 1.40709 0.98460 0.85397 0.78598 0.78767 0.77994 1.19776 1.21196 1.18139 1.67803 1.41666 0.97580 1.25727 1.23719 0.87023 0.94679 0.87499 1.20606 0.99736 0.88110 1.04785 1.68172 1.09508 1.29992 1.22777 0.88029 0.89408 0.89772 0.84051 0.91519 0.91315 0.90991 0.89332 0.90459 0.99935 0.99245 0.92819 0.88152 0.89388 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.34 10.21 71.24 0.73 -1.61 16 2 C 0.19 6.36 6.81 42.42 0.29 6.65 16 3 C -0.31 -11.65 9.00 22.58 0.20 -11.45 16 4 C 0.43 16.62 7.39 133.16 0.98 17.60 16 5 N -0.60 -22.67 2.98 -728.26 -2.17 -24.84 16 6 C 0.10 3.08 10.51 127.77 1.34 4.42 16 7 C 0.14 5.50 5.21 86.38 0.45 5.96 16 8 C 0.02 1.12 5.30 29.85 0.16 1.28 16 9 C -0.54 -29.31 9.11 25.60 0.23 -29.07 16 10 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 11 C 0.00 0.10 5.46 84.65 0.46 0.56 16 12 N -0.94 -56.66 13.29 21.45 0.28 -56.37 16 13 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 16 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 17 N -0.60 -22.05 9.13 -185.44 -1.69 -23.74 16 18 C 0.34 11.13 7.64 138.77 1.06 12.19 16 19 C -0.07 -1.64 10.32 71.24 0.74 -0.90 16 20 N -0.58 -19.53 10.27 -176.28 -1.81 -21.34 16 21 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.08 1.93 8.09 -2.39 -0.02 1.91 16 24 H 0.14 5.18 6.16 -2.91 -0.02 5.16 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 27 H 0.07 2.30 7.34 -2.39 -0.02 2.28 16 28 H 0.09 3.22 8.07 -2.39 -0.02 3.20 16 29 H 0.08 2.94 6.05 -2.39 -0.01 2.93 16 30 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 31 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 32 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -68.15 298.46 4.35 -63.80 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.06 Total: 11.96 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 6.65 Total: 5.63 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -5.39 Total: -126.29 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -68.15 4.35 -63.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259278066.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.837 kcal (2) G-P(sol) polarization free energy of solvation -68.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds