Wall clock time and date at job start Mon Mar 30 2020 03:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38185 * 120.39801 * 2 1 4 4 C 1.39663 * 118.31641 * 179.97438 * 3 2 1 5 5 N 1.38521 * 120.53427 * 179.97438 * 4 3 2 6 6 C 1.36933 * 120.00057 * 4.99971 * 5 4 3 7 7 H 1.07996 * 120.00023 * 329.55871 * 6 5 4 8 8 C 1.38851 * 119.99907 * 149.28445 * 6 5 4 9 9 N 1.31526 * 120.00201 * 343.06349 * 8 6 5 10 10 Si 1.86803 * 119.99908 * 163.06386 * 8 6 5 11 11 H 1.48496 * 109.47178 * 60.00073 * 10 8 6 12 12 H 1.48503 * 109.46968 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47007 * 299.99569 * 10 8 6 14 14 C 1.46505 * 120.00352 * 185.00666 * 5 4 3 15 15 C 1.53009 * 109.46435 * 297.24787 * 14 5 4 16 16 C 1.52998 * 109.46972 * 57.24243 * 14 5 4 17 17 N 1.33064 * 118.92827 * 0.25576 * 4 3 2 18 18 C 1.31698 * 120.68574 * 359.48623 * 17 4 3 19 19 C 1.50705 * 119.07658 * 180.24434 * 18 17 4 20 20 N 1.31826 * 121.84907 * 0.52528 * 18 17 4 21 21 H 1.08998 * 109.47021 * 90.00417 * 1 2 3 22 22 H 1.09003 * 109.46785 * 209.99804 * 1 2 3 23 23 H 1.08997 * 109.47345 * 329.99481 * 1 2 3 24 24 H 1.08000 * 120.83821 * 359.95794 * 3 2 1 25 25 H 0.97001 * 120.00540 * 179.97438 * 9 8 6 26 26 H 1.08996 * 109.47400 * 177.24869 * 14 5 4 27 27 H 1.08996 * 109.47260 * 59.99997 * 15 14 5 28 28 H 1.09001 * 109.46565 * 180.02562 * 15 14 5 29 29 H 1.09000 * 109.46802 * 299.99328 * 15 14 5 30 30 H 1.08997 * 109.47397 * 60.00522 * 16 14 5 31 31 H 1.09005 * 109.46838 * 180.02562 * 16 14 5 32 32 H 1.09002 * 109.47527 * 300.00081 * 16 14 5 33 33 H 1.09002 * 109.46618 * 270.27329 * 19 18 17 34 34 H 1.08999 * 109.47076 * 30.27504 * 19 18 17 35 35 H 1.08996 * 109.47093 * 150.27700 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1919 0.0000 4 6 3.6020 1.1412 0.0005 5 7 4.3486 2.3079 0.0000 6 6 3.7225 3.5215 0.1023 7 1 2.7263 3.6503 -0.2943 8 6 4.3663 4.5848 0.7211 9 7 5.4088 4.3638 1.4921 10 14 3.7518 6.3292 0.4585 11 1 2.3480 6.4359 0.9308 12 1 4.6049 7.2747 1.2225 13 1 3.8147 6.6639 -0.9870 14 6 5.8081 2.2437 -0.1101 15 6 6.3787 1.5027 1.1009 16 6 6.1906 1.4987 -1.3905 17 7 4.2029 -0.0461 -0.0041 18 6 3.4959 -1.1572 0.0009 19 6 4.2141 -2.4822 0.0009 20 7 2.1777 -1.1430 0.0005 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 1.6865 2.1386 -0.0007 25 1 5.8588 5.1067 1.9240 26 1 6.2149 3.2544 -0.1424 27 1 5.9719 0.4920 1.1333 28 1 7.4646 1.4553 1.0192 29 1 6.1062 2.0335 2.0131 30 1 5.7841 2.0264 -2.2532 31 1 7.2765 1.4505 -1.4722 32 1 5.7838 0.4879 -1.3581 33 1 4.3875 -2.8013 -1.0268 34 1 5.1694 -2.3776 0.5151 35 1 3.6046 -3.2257 0.5144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259407267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:28 Heat of formation + Delta-G solvation = 37.143763 kcal Electronic energy + Delta-G solvation = -17184.178578 eV Core-core repulsion = 14602.909613 eV Total energy + Delta-G solvation = -2581.268965 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.53606 -38.81746 -35.05186 -34.29623 -33.79059 -31.58627 -29.76059 -28.19247 -27.81573 -26.73646 -23.50282 -22.75534 -21.38616 -19.21625 -17.96898 -17.49127 -16.30703 -15.97565 -15.84901 -15.50738 -14.97260 -14.65353 -14.47137 -14.06693 -13.66772 -13.50445 -13.32579 -13.12187 -13.02337 -12.89839 -12.84874 -12.69259 -12.43181 -12.18225 -12.06439 -11.64332 -11.29135 -11.10015 -10.70017 -10.11530 -9.57233 -8.86576 -8.35298 -5.93816 0.53860 0.82658 1.41909 1.47271 1.52015 2.20414 2.86249 2.88169 3.33546 3.50580 3.72850 4.21847 4.39128 4.53893 4.55854 4.72804 4.77929 4.81743 4.84201 4.88407 4.90582 4.92479 4.98691 5.11441 5.14975 5.25341 5.28413 5.34647 5.36391 5.62779 5.72165 5.91621 6.19797 6.45211 6.78462 7.31708 7.51715 7.94831 8.63705 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024894 B = 0.009738 C = 0.007533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.483476 B = 2874.536813 C = 3716.119375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.180 3.820 3 C -0.331 4.331 4 C 0.377 3.623 5 N -0.417 5.417 6 C -0.343 4.343 7 H 0.092 0.908 8 C -0.001 4.001 9 N -0.880 5.880 10 Si 0.992 3.008 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.268 1.268 14 C 0.161 3.839 15 C -0.134 4.134 16 C -0.155 4.155 17 N -0.600 5.600 18 C 0.327 3.673 19 C -0.068 4.068 20 N -0.611 5.611 21 H 0.089 0.911 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.124 0.876 25 H 0.273 0.727 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -5.056 -2.863 6.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 C -0.362 4.362 4 C 0.132 3.868 5 N -0.109 5.109 6 C -0.471 4.471 7 H 0.109 0.891 8 C -0.205 4.205 9 N -0.515 5.515 10 Si 0.815 3.185 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.193 1.193 14 C 0.057 3.943 15 C -0.192 4.192 16 C -0.214 4.214 17 N -0.329 5.329 18 C 0.056 3.944 19 C -0.127 4.127 20 N -0.338 5.338 21 H 0.108 0.892 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.141 0.859 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.563 -5.463 -2.735 6.306 hybrid contribution -0.464 1.998 0.119 2.054 sum -2.027 -3.466 -2.616 4.792 Atomic orbital electron populations 1.20665 0.86443 1.03770 1.03746 1.21709 0.98194 0.87483 0.88543 1.21788 0.94046 1.00151 1.20191 1.19135 0.89224 0.86962 0.91450 1.42808 1.04990 1.01351 1.61782 1.19721 1.03361 0.86427 1.37636 0.89076 1.26218 0.96898 1.03902 0.93472 1.70148 1.21485 1.33584 1.26241 0.85015 0.78443 0.76464 0.78618 1.19149 1.20364 1.19286 1.20795 0.79686 0.99414 0.94377 1.21860 0.99192 1.00245 0.97877 1.22171 1.01309 1.01683 0.96201 1.67861 1.40609 0.97351 1.27097 1.23540 0.87328 0.94759 0.88760 1.20470 0.99409 0.88791 1.03986 1.68051 1.09412 1.29678 1.26641 0.89211 0.89848 0.90037 0.85850 0.91732 0.90624 0.92003 0.92462 0.94669 0.94871 0.90831 0.91096 0.89091 0.90018 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.58 10.21 71.24 0.73 -1.85 16 2 C 0.18 7.24 6.82 42.44 0.29 7.53 16 3 C -0.33 -15.19 9.05 22.60 0.20 -14.99 16 4 C 0.38 18.61 6.76 133.16 0.90 19.51 16 5 N -0.42 -21.36 2.60 -494.82 -1.29 -22.65 16 6 C -0.34 -17.87 8.88 84.04 0.75 -17.13 16 7 H 0.09 4.64 6.38 -2.91 -0.02 4.62 16 8 C 0.00 -0.03 4.87 84.89 0.41 0.39 16 9 N -0.88 -45.80 10.25 21.65 0.22 -45.58 16 10 Si 0.99 39.65 29.59 68.60 2.03 41.68 16 11 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 12 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 13 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 14 C 0.16 7.62 2.28 44.99 0.10 7.72 16 15 C -0.13 -6.05 8.99 71.99 0.65 -5.40 16 16 C -0.16 -6.35 9.09 71.98 0.65 -5.69 16 17 N -0.60 -27.15 5.61 -185.38 -1.04 -28.19 16 18 C 0.33 13.23 7.64 138.77 1.06 14.29 16 19 C -0.07 -1.99 10.32 71.24 0.73 -1.25 16 20 N -0.61 -24.93 10.27 -176.25 -1.81 -26.74 16 21 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 22 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 24 H 0.12 5.61 6.35 -2.91 -0.02 5.59 16 25 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 26 H 0.08 3.88 5.96 -2.39 -0.01 3.87 16 27 H 0.06 2.81 6.03 -2.39 -0.01 2.79 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.03 1.77 7.24 -2.39 -0.02 1.75 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 32 H 0.07 2.97 5.95 -2.39 -0.01 2.96 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -59.92 284.00 5.68 -54.24 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 1.08 Total: 24.12 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 6.48 Total: 3.12 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -3.91 Total: -123.16 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -59.92 5.68 -54.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259407267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.386 kcal (2) G-P(sol) polarization free energy of solvation -59.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds