Wall clock time and date at job start Mon Mar 30 2020 03:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30839 * 125.90371 * 2 1 4 4 N 1.40079 * 108.20743 * 180.25712 * 3 2 1 5 5 H 0.96996 * 126.03817 * 179.74179 * 4 3 2 6 6 C 1.34953 * 107.92582 * 359.71697 * 4 3 2 7 7 C 1.35309 * 107.74666 * 359.97438 * 6 4 3 8 8 C 1.50696 * 126.04151 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.52401 * 179.89988 * 8 7 6 10 10 C 1.53121 * 109.52407 * 59.70896 * 8 7 6 11 11 C 1.53041 * 109.27880 * 182.43979 * 10 8 7 12 12 N 1.46845 * 109.52170 * 59.18253 * 11 10 8 13 13 C 1.46846 * 111.19550 * 298.25499 * 12 11 10 14 14 H 1.09000 * 109.45477 * 301.73416 * 13 12 11 15 15 C 1.50704 * 109.46060 * 181.76097 * 13 12 11 16 16 H 1.08000 * 120.00024 * 265.91829 * 15 13 12 17 17 C 1.37876 * 119.99829 * 85.92146 * 15 13 12 18 18 N 1.31505 * 120.00417 * 353.45749 * 17 15 13 19 19 Si 1.86801 * 119.99645 * 173.45383 * 17 15 13 20 20 H 1.48497 * 109.47581 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47149 * 240.00234 * 19 17 15 22 22 H 1.48499 * 109.47466 * 120.00188 * 19 17 15 23 23 C 1.53038 * 109.52464 * 61.74405 * 13 12 11 24 24 H 1.09002 * 109.47120 * 270.21537 * 1 2 3 25 25 H 1.08997 * 109.47005 * 30.21627 * 1 2 3 26 26 H 1.09001 * 109.47266 * 150.21215 * 1 2 3 27 27 H 1.07996 * 126.12440 * 180.02562 * 6 4 3 28 28 H 1.08993 * 109.50203 * 302.38128 * 10 8 7 29 29 H 1.09003 * 109.50201 * 62.50122 * 10 8 7 30 30 H 1.08999 * 109.45638 * 179.19649 * 11 10 8 31 31 H 1.08994 * 109.46037 * 299.17195 * 11 10 8 32 32 H 1.00899 * 110.99888 * 174.15969 * 12 11 10 33 33 H 0.97006 * 119.99990 * 354.59741 * 18 17 15 34 34 H 1.08996 * 109.50209 * 60.76275 * 23 13 12 35 35 H 1.09004 * 109.50201 * 180.87916 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0060 5 1 4.3908 1.2078 -0.0108 6 6 3.6142 -0.7155 -0.0032 7 6 2.3271 -1.1331 0.0049 8 6 1.8599 -2.5658 0.0110 9 1 0.7702 -2.5935 0.0188 10 6 2.4000 -3.2749 1.2560 11 6 1.9732 -4.7443 1.2257 12 7 2.4968 -5.3824 0.0112 13 6 1.9547 -4.7486 -1.1975 14 1 0.8666 -4.8108 -1.1832 15 6 2.4824 -5.4596 -2.4170 16 1 3.3670 -5.0921 -2.9158 17 6 1.8357 -6.5792 -2.8959 18 7 0.8375 -7.1023 -2.2182 19 14 2.3776 -7.3529 -4.5074 20 1 3.5134 -6.5797 -5.0706 21 1 1.2455 -7.3394 -5.4684 22 1 2.8042 -8.7545 -4.2649 23 6 2.3809 -3.2793 -1.2395 24 1 -0.3633 0.0039 1.0277 25 1 -0.3633 0.8880 -0.5172 26 1 -0.3634 -0.8919 -0.5105 27 1 4.4890 -1.3487 -0.0060 28 1 3.4881 -3.2122 1.2672 29 1 1.9981 -2.7976 2.1498 30 1 2.3683 -5.2553 2.1037 31 1 0.8850 -4.8064 1.2283 32 1 2.3098 -6.3739 0.0144 33 1 0.6065 -6.7493 -1.3447 34 1 3.4687 -3.2167 -1.2676 35 1 1.9654 -2.8052 -2.1288 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259612766.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:55 Heat of formation + Delta-G solvation = 51.252401 kcal Electronic energy + Delta-G solvation = -16793.666008 eV Core-core repulsion = 14213.008840 eV Total energy + Delta-G solvation = -2580.657168 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.12686 -37.71812 -33.60516 -32.71586 -31.76354 -29.64610 -28.40371 -27.63015 -24.74149 -23.00460 -21.65136 -20.69779 -19.31771 -18.47629 -17.75699 -16.80056 -15.02143 -14.73774 -14.20388 -13.85488 -13.70243 -13.47083 -13.30716 -12.76464 -12.64207 -12.45038 -12.34985 -11.96355 -11.48556 -11.21060 -10.77641 -10.73855 -10.30599 -10.19898 -10.10384 -9.84451 -9.48193 -9.19853 -8.63005 -8.46743 -8.05973 -7.14971 -6.39128 -4.11943 2.05120 2.94277 3.02549 3.44477 3.47056 3.61681 4.51183 4.84860 5.00562 5.14943 5.31963 5.45211 5.57926 5.61111 5.70367 5.79876 5.91444 6.04092 6.06355 6.13475 6.25607 6.30037 6.39905 6.58374 6.67760 6.81071 6.87333 6.91510 7.03515 7.36129 7.43129 7.84059 8.00352 8.41757 8.53726 8.69817 8.86227 9.60733 10.97514 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032120 B = 0.006494 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.527604 B = 4310.404509 C = 4551.108748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.077 3.923 3 N -0.306 5.306 4 N -0.484 5.484 5 H 0.435 0.565 6 C 0.059 3.941 7 C -0.209 4.209 8 C -0.017 4.017 9 H 0.066 0.934 10 C -0.097 4.097 11 C 0.051 3.949 12 N -0.687 5.687 13 C 0.196 3.804 14 H -0.001 1.001 15 C -0.578 4.578 16 H 0.053 0.947 17 C 0.020 3.980 18 N -0.913 5.913 19 Si 1.073 2.927 20 H -0.289 1.289 21 H -0.287 1.287 22 H -0.288 1.288 23 C -0.082 4.082 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.174 0.826 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.013 0.987 32 H 0.336 0.664 33 H 0.266 0.734 34 H 0.053 0.947 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 11.032 5.803 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 N -0.130 5.130 4 N -0.192 5.192 5 H 0.279 0.721 6 C -0.088 4.088 7 C -0.220 4.220 8 C -0.036 4.036 9 H 0.085 0.915 10 C -0.135 4.135 11 C -0.079 4.079 12 N -0.320 5.320 13 C 0.089 3.911 14 H 0.017 0.983 15 C -0.617 4.617 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.549 5.549 19 Si 0.902 3.098 20 H -0.215 1.215 21 H -0.213 1.213 22 H -0.215 1.215 23 C -0.121 4.121 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.191 0.809 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.154 0.846 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.930 11.480 4.712 12.750 hybrid contribution 0.041 0.261 1.173 1.202 sum 2.971 11.741 5.885 13.465 Atomic orbital electron populations 1.20181 0.87011 1.03341 1.02745 1.22274 0.96884 0.90442 0.99325 1.77166 0.86889 1.22688 1.26280 1.46096 1.07003 1.05505 1.60614 0.72147 1.22334 0.99678 0.84790 1.01952 1.20149 0.91667 0.96403 1.13817 1.19692 0.99370 0.87923 0.96664 0.91538 1.21539 1.00745 0.94844 0.96376 1.21878 0.96207 0.94940 0.94905 1.61067 1.62502 1.07254 1.01215 1.19273 0.92981 0.90648 0.88186 0.98310 1.22010 1.14675 1.13815 1.11201 0.92910 1.25906 0.94110 0.94595 1.03799 1.70785 1.27939 1.42112 1.14097 0.83485 0.75635 0.75762 0.74912 1.21476 1.21344 1.21459 1.21562 1.00022 0.96065 0.94425 0.90738 0.91152 0.90131 0.80915 0.91997 0.93153 0.92766 0.96852 0.84603 0.92287 0.92817 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.11 36.00 0.36 -0.57 16 2 C 0.08 1.20 7.22 -82.40 -0.59 0.60 16 3 N -0.31 -4.73 12.70 33.67 0.43 -4.30 16 4 N -0.48 -6.25 7.36 30.44 0.22 -6.02 16 5 H 0.44 3.97 8.96 -182.62 -1.64 2.33 16 6 C 0.06 0.82 11.21 -17.22 -0.19 0.63 16 7 C -0.21 -3.34 4.85 -105.05 -0.51 -3.85 16 8 C -0.02 -0.29 2.57 -91.65 -0.24 -0.53 16 9 H 0.07 1.19 6.92 -51.93 -0.36 0.83 16 10 C -0.10 -1.63 5.28 -26.65 -0.14 -1.77 16 11 C 0.05 0.95 6.55 -3.83 -0.03 0.93 16 12 N -0.69 -15.56 6.49 -107.99 -0.70 -16.26 16 13 C 0.20 4.80 1.96 -68.87 -0.14 4.67 16 14 H 0.00 -0.02 7.11 -51.93 -0.37 -0.39 16 15 C -0.58 -15.91 8.55 -34.44 -0.29 -16.20 16 16 H 0.05 1.48 7.82 -52.49 -0.41 1.07 16 17 C 0.02 0.57 5.45 -17.82 -0.10 0.47 16 18 N -0.91 -26.75 13.56 55.43 0.75 -26.00 16 19 Si 1.07 24.94 29.91 -169.99 -5.08 19.85 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.08 -1.73 4.54 -26.65 -0.12 -1.85 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.02 7.24 -51.93 -0.38 0.64 16 27 H 0.17 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.06 1.03 7.94 -51.93 -0.41 0.62 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.34 8.09 8.17 -39.29 -0.32 7.77 16 33 H 0.27 7.73 6.36 -40.82 -0.26 7.47 16 34 H 0.05 1.14 7.94 -51.93 -0.41 0.72 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 284.99 15.07 4.29 4.29 Total: -1.00 -31.04 284.99 -8.38 -39.42 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.31 Total: 6.48 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -1.98 Total: -17.47 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.70 Total: -52.58 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.04 -8.38 -39.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259612766.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.676 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds