Wall clock time and date at job start Mon Mar 30 2020 03:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 H 0.96994 * 126.03788 * 179.69613 * 4 3 2 6 6 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 7 7 C 1.35319 * 107.74352 * 359.97438 * 6 4 3 8 8 C 1.50706 * 126.03437 * 180.02562 * 7 6 4 9 9 H 1.09003 * 109.52049 * 180.15300 * 8 7 6 10 10 C 1.53117 * 109.52237 * 60.02689 * 8 7 6 11 11 C 1.53039 * 109.27636 * 182.43724 * 10 8 7 12 12 N 1.46842 * 109.52172 * 59.17953 * 11 10 8 13 13 C 1.46847 * 111.20079 * 298.25431 * 12 11 10 14 14 H 1.08997 * 109.46420 * 181.76020 * 13 12 11 15 15 C 1.50698 * 109.46217 * 301.74043 * 13 12 11 16 16 H 1.07999 * 120.00157 * 120.00019 * 15 13 12 17 17 C 1.37874 * 119.99922 * 299.99810 * 15 13 12 18 18 N 1.31515 * 119.99977 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99920 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47102 * 59.99492 * 19 17 15 21 21 H 1.48500 * 109.46824 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46631 * 299.99411 * 19 17 15 23 23 C 1.53040 * 109.51933 * 61.74236 * 13 12 11 24 24 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 25 25 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 26 26 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 27 27 H 1.07994 * 126.12639 * 180.02562 * 6 4 3 28 28 H 1.09005 * 109.50540 * 302.38100 * 10 8 7 29 29 H 1.09007 * 109.50362 * 62.45916 * 10 8 7 30 30 H 1.09003 * 109.46014 * 179.19554 * 11 10 8 31 31 H 1.08997 * 109.46126 * 299.16408 * 11 10 8 32 32 H 1.00905 * 111.00085 * 62.35852 * 12 11 10 33 33 H 0.97003 * 119.99636 * 180.02562 * 18 17 15 34 34 H 1.08994 * 109.50022 * 180.87916 * 23 13 12 35 35 H 1.09009 * 109.50235 * 60.76244 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 1 4.3908 1.2080 -0.0114 6 6 3.6143 -0.7153 -0.0031 7 6 2.3272 -1.1329 0.0048 8 6 1.8600 -2.5657 0.0109 9 1 0.7704 -2.5936 0.0141 10 6 2.3936 -3.2726 1.2600 11 6 1.9672 -4.7420 1.2300 12 7 2.4971 -5.3821 0.0193 13 6 1.9615 -4.7505 -1.1933 14 1 2.3478 -5.2662 -2.0724 15 6 0.4570 -4.8364 -1.1815 16 1 -0.1356 -3.9338 -1.2014 17 6 -0.1629 -6.0674 -1.1453 18 7 0.5587 -7.1666 -1.1217 19 14 -2.0279 -6.1740 -1.1314 20 1 -2.5693 -5.5354 -2.3578 21 1 -2.4419 -7.5995 -1.0920 22 1 -2.5548 -5.4717 0.0663 23 6 2.3877 -3.2813 -1.2356 24 1 -0.3634 0.0038 1.0276 25 1 -0.3633 0.8880 -0.5172 26 1 -0.3633 -0.8919 -0.5105 27 1 4.4892 -1.3484 -0.0059 28 1 3.4817 -3.2097 1.2769 29 1 1.9875 -2.7933 2.1508 30 1 2.3576 -5.2516 2.1109 31 1 0.8790 -4.8043 1.2270 32 1 3.5061 -5.3718 0.0170 33 1 0.1225 -8.0327 -1.0966 34 1 1.9770 -2.8088 -2.1278 35 1 3.4758 -3.2186 -1.2580 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259614462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:00 Heat of formation + Delta-G solvation = 63.294916 kcal Electronic energy + Delta-G solvation = -17093.109269 eV Core-core repulsion = 14512.974304 eV Total energy + Delta-G solvation = -2580.134965 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.05183 -37.74920 -33.09351 -32.40145 -31.46036 -29.69814 -28.14609 -27.48729 -25.08907 -22.81117 -21.54339 -20.51197 -19.21834 -18.62025 -17.54440 -15.83062 -14.80188 -14.65381 -14.47002 -14.03539 -13.37055 -13.27602 -12.97681 -12.59419 -12.52675 -12.11636 -11.89130 -11.84398 -11.32439 -11.07641 -10.79796 -10.62246 -10.35154 -10.15506 -10.09431 -9.52824 -9.41545 -9.12363 -8.77989 -8.30260 -7.99994 -6.66667 -5.78525 -3.89746 2.10860 3.03878 3.08399 3.38805 3.44206 3.46379 4.54414 4.94782 5.06857 5.41166 5.49209 5.55718 5.74191 5.83441 5.89605 5.97338 6.10439 6.20589 6.22883 6.31158 6.37159 6.48352 6.68549 6.71638 6.96052 7.02607 7.08402 7.14080 7.30612 7.48994 7.70724 7.91783 7.98048 8.31093 8.71715 8.99199 9.29617 9.76389 11.26461 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031332 B = 0.007946 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.438952 B = 3522.763082 C = 4034.699653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.079 3.921 3 N -0.307 5.307 4 N -0.487 5.487 5 H 0.434 0.566 6 C 0.049 3.951 7 C -0.207 4.207 8 C -0.003 4.003 9 H 0.086 0.914 10 C -0.138 4.138 11 C 0.075 3.925 12 N -0.650 5.650 13 C 0.216 3.784 14 H 0.037 0.963 15 C -0.525 4.525 16 H 0.053 0.947 17 C 0.082 3.918 18 N -0.850 5.850 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.130 4.130 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.169 0.831 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.296 0.704 33 H 0.254 0.746 34 H 0.050 0.950 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 10.703 3.345 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 N -0.132 5.132 4 N -0.195 5.195 5 H 0.277 0.723 6 C -0.096 4.096 7 C -0.218 4.218 8 C -0.022 4.022 9 H 0.104 0.896 10 C -0.178 4.178 11 C -0.056 4.056 12 N -0.276 5.276 13 C 0.109 3.891 14 H 0.055 0.945 15 C -0.564 4.564 16 H 0.071 0.929 17 C -0.124 4.124 18 N -0.485 5.485 19 Si 0.702 3.298 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.170 4.170 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.186 0.814 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.410 11.201 3.341 12.493 hybrid contribution 0.059 0.242 0.051 0.255 sum 4.468 11.444 3.392 12.745 Atomic orbital electron populations 1.20207 0.86902 1.03454 1.02855 1.22306 0.96954 0.90420 0.99045 1.77165 0.86847 1.22773 1.26419 1.46083 1.06990 1.05458 1.60941 0.72347 1.22267 0.99579 0.84809 1.02990 1.20428 0.91448 0.97221 1.12697 1.19490 1.01040 0.86396 0.95301 0.89616 1.22318 0.98928 0.99588 0.96990 1.21740 1.02047 0.89022 0.92774 1.60808 1.07915 1.56881 1.01992 1.19154 0.95322 0.85443 0.89196 0.94490 1.20855 0.90375 0.91859 1.53333 0.92891 1.24937 0.96700 0.96119 0.94648 1.70083 1.34120 0.97010 1.47302 0.86977 0.87470 0.76831 0.78476 1.20481 1.21522 1.20381 1.22338 0.97214 1.01006 0.96407 0.90720 0.91344 0.89696 0.81376 0.94000 0.93478 0.94021 0.90094 0.88908 0.93602 0.93141 0.95228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.11 36.01 0.36 -0.69 16 2 C 0.08 1.29 7.22 -82.40 -0.59 0.70 16 3 N -0.31 -4.93 12.70 33.67 0.43 -4.50 16 4 N -0.49 -6.42 7.36 30.45 0.22 -6.20 16 5 H 0.43 4.05 8.96 -182.61 -1.64 2.41 16 6 C 0.05 0.70 11.21 -17.22 -0.19 0.50 16 7 C -0.21 -3.41 4.85 -105.05 -0.51 -3.92 16 8 C 0.00 -0.05 2.32 -91.65 -0.21 -0.26 16 9 H 0.09 1.72 5.51 -51.93 -0.29 1.44 16 10 C -0.14 -2.43 5.26 -26.65 -0.14 -2.58 16 11 C 0.07 1.54 6.30 -3.84 -0.02 1.51 16 12 N -0.65 -14.78 5.98 -107.99 -0.65 -15.42 16 13 C 0.22 5.16 2.95 -68.87 -0.20 4.95 16 14 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 15 C -0.53 -13.74 6.47 -34.44 -0.22 -13.96 16 16 H 0.05 1.37 6.76 -52.49 -0.35 1.01 16 17 C 0.08 2.23 5.39 -17.82 -0.10 2.13 16 18 N -0.85 -24.34 12.77 55.43 0.71 -23.63 16 19 Si 0.87 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.13 -2.58 4.74 -26.65 -0.13 -2.71 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.22 7.24 -51.93 -0.38 0.84 16 27 H 0.17 1.96 8.06 -52.49 -0.42 1.53 16 28 H 0.04 0.68 7.94 -51.93 -0.41 0.27 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.89 6.99 -51.93 -0.36 1.53 16 32 H 0.30 6.10 8.86 -39.29 -0.35 5.75 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.03 0.54 7.94 -51.92 -0.41 0.12 16 LS Contribution 281.90 15.07 4.25 4.25 Total: -1.00 -30.11 281.90 -8.30 -38.41 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.28 Total: 5.54 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.96 Total: -14.32 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.71 Total: -49.75 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.11 -8.30 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259614462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.704 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds