Wall clock time and date at job start Mon Mar 30 2020 03:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 H 0.96994 * 126.03788 * 179.69613 * 4 3 2 6 6 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 7 7 C 1.35319 * 107.74352 * 359.97438 * 6 4 3 8 8 C 1.50706 * 126.03437 * 180.02562 * 7 6 4 9 9 H 1.09003 * 109.52049 * 180.15300 * 8 7 6 10 10 C 1.53117 * 109.52237 * 60.02689 * 8 7 6 11 11 C 1.53039 * 109.27636 * 182.43724 * 10 8 7 12 12 N 1.46842 * 109.52172 * 59.17953 * 11 10 8 13 13 C 1.46847 * 111.20079 * 298.25431 * 12 11 10 14 14 H 1.08997 * 109.46420 * 181.76020 * 13 12 11 15 15 C 1.50698 * 109.46217 * 301.74043 * 13 12 11 16 16 H 1.07999 * 120.00157 * 120.00019 * 15 13 12 17 17 C 1.37874 * 119.99922 * 299.99810 * 15 13 12 18 18 N 1.31515 * 119.99977 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99920 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47102 * 59.99492 * 19 17 15 21 21 H 1.48500 * 109.46824 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46631 * 299.99411 * 19 17 15 23 23 C 1.53040 * 109.51933 * 61.74236 * 13 12 11 24 24 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 25 25 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 26 26 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 27 27 H 1.07994 * 126.12639 * 180.02562 * 6 4 3 28 28 H 1.09005 * 109.50540 * 302.38100 * 10 8 7 29 29 H 1.09007 * 109.50362 * 62.45916 * 10 8 7 30 30 H 1.09003 * 109.46014 * 179.19554 * 11 10 8 31 31 H 1.08997 * 109.46126 * 299.16408 * 11 10 8 32 32 H 1.00905 * 111.00085 * 62.35852 * 12 11 10 33 33 H 0.97003 * 119.99636 * 180.02562 * 18 17 15 34 34 H 1.08994 * 109.50022 * 180.87916 * 23 13 12 35 35 H 1.09009 * 109.50235 * 60.76244 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 1 4.3908 1.2080 -0.0114 6 6 3.6143 -0.7153 -0.0031 7 6 2.3272 -1.1329 0.0048 8 6 1.8600 -2.5657 0.0109 9 1 0.7704 -2.5936 0.0141 10 6 2.3936 -3.2726 1.2600 11 6 1.9672 -4.7420 1.2300 12 7 2.4971 -5.3821 0.0193 13 6 1.9615 -4.7505 -1.1933 14 1 2.3478 -5.2662 -2.0724 15 6 0.4570 -4.8364 -1.1815 16 1 -0.1356 -3.9338 -1.2014 17 6 -0.1629 -6.0674 -1.1453 18 7 0.5587 -7.1666 -1.1217 19 14 -2.0279 -6.1740 -1.1314 20 1 -2.5693 -5.5354 -2.3578 21 1 -2.4419 -7.5995 -1.0920 22 1 -2.5548 -5.4717 0.0663 23 6 2.3877 -3.2813 -1.2356 24 1 -0.3634 0.0038 1.0276 25 1 -0.3633 0.8880 -0.5172 26 1 -0.3633 -0.8919 -0.5105 27 1 4.4892 -1.3484 -0.0059 28 1 3.4817 -3.2097 1.2769 29 1 1.9875 -2.7933 2.1508 30 1 2.3576 -5.2516 2.1109 31 1 0.8790 -4.8043 1.2270 32 1 3.5061 -5.3718 0.0170 33 1 0.1225 -8.0327 -1.0966 34 1 1.9770 -2.8088 -2.1278 35 1 3.4758 -3.2186 -1.2580 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259614462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:00 Heat of formation + Delta-G solvation = 42.625733 kcal Electronic energy + Delta-G solvation = -17094.005552 eV Core-core repulsion = 14512.974304 eV Total energy + Delta-G solvation = -2581.031249 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.21938 -39.38882 -34.68672 -33.89655 -33.00495 -31.43594 -29.44609 -28.64981 -27.07514 -24.26893 -23.15159 -21.96745 -20.53479 -20.11695 -18.71365 -17.82766 -16.44268 -16.41995 -15.78561 -15.22647 -14.94455 -14.87447 -14.63315 -13.85576 -13.76797 -13.61850 -13.55908 -12.98965 -12.96214 -12.69805 -12.65738 -12.46249 -12.06401 -11.74137 -11.52001 -11.25573 -11.06199 -10.69622 -10.34631 -10.25057 -9.24647 -8.40225 -7.85981 -6.01988 0.98603 1.47367 1.48212 1.54137 1.82545 2.08931 2.54007 3.36824 3.80434 3.95499 4.12738 4.16220 4.39986 4.47081 4.53945 4.71629 4.78006 4.84793 4.87205 4.93142 4.99967 5.10329 5.16507 5.23584 5.40735 5.44513 5.51403 5.68985 5.79166 5.84442 5.92582 6.34241 6.51939 6.79202 6.82533 7.11757 7.47504 7.67091 9.17499 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031332 B = 0.007946 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.438952 B = 3522.763082 C = 4034.699653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.065 3.935 3 N -0.328 5.328 4 N -0.471 5.471 5 H 0.451 0.549 6 C 0.069 3.931 7 C -0.237 4.237 8 C 0.010 3.990 9 H 0.060 0.940 10 C -0.126 4.126 11 C 0.079 3.921 12 N -0.669 5.669 13 C 0.216 3.784 14 H 0.000 1.000 15 C -0.527 4.527 16 H 0.050 0.950 17 C 0.035 3.965 18 N -0.884 5.884 19 Si 0.930 3.070 20 H -0.275 1.275 21 H -0.291 1.291 22 H -0.273 1.273 23 C -0.117 4.117 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.200 0.800 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.310 0.690 33 H 0.251 0.749 34 H 0.037 0.963 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 12.201 4.136 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 N -0.154 5.154 4 N -0.180 5.180 5 H 0.298 0.702 6 C -0.079 4.079 7 C -0.248 4.248 8 C -0.010 4.010 9 H 0.078 0.922 10 C -0.166 4.166 11 C -0.052 4.052 12 N -0.297 5.297 13 C 0.108 3.892 14 H 0.018 0.982 15 C -0.566 4.566 16 H 0.068 0.932 17 C -0.168 4.168 18 N -0.521 5.521 19 Si 0.757 3.243 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.198 1.198 23 C -0.157 4.157 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.216 0.784 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.346 12.745 4.136 14.426 hybrid contribution -0.156 -0.193 -0.208 0.324 sum 5.190 12.552 3.928 14.139 Atomic orbital electron populations 1.20233 0.86158 1.03414 1.03579 1.22590 0.97865 0.90499 0.99091 1.77129 0.87962 1.22992 1.27281 1.46117 1.06916 1.05622 1.59388 0.70206 1.22638 0.99596 0.85247 1.00409 1.20268 0.92745 0.96048 1.15731 1.19202 0.99449 0.87779 0.94534 0.92180 1.22171 1.00243 0.97034 0.97118 1.21644 0.99881 0.91362 0.92266 1.60574 1.08952 1.57954 1.02205 1.18966 0.94023 0.87683 0.88491 0.98169 1.21167 0.91960 0.91577 1.51910 0.93204 1.25574 1.00444 0.96012 0.94758 1.70214 1.35523 0.97220 1.49124 0.86073 0.83030 0.76550 0.78618 1.20054 1.21698 1.19787 1.22135 0.98446 0.98188 0.96955 0.89632 0.90206 0.90835 0.78372 0.91717 0.92336 0.92607 0.93543 0.87389 0.94033 0.94457 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.03 10.11 71.24 0.72 -1.31 16 2 C 0.07 2.02 7.22 43.10 0.31 2.33 16 3 N -0.33 -9.76 12.70 -47.38 -0.60 -10.37 16 4 N -0.47 -10.83 7.36 -57.59 -0.42 -11.25 16 5 H 0.45 6.77 8.96 -213.34 -1.91 4.85 16 6 C 0.07 1.68 11.21 83.54 0.94 2.61 16 7 C -0.24 -7.26 4.85 -20.14 -0.10 -7.36 16 8 C 0.01 0.36 2.32 -11.46 -0.03 0.33 16 9 H 0.06 2.41 5.51 -2.39 -0.01 2.40 16 10 C -0.13 -4.14 5.26 30.65 0.16 -3.98 16 11 C 0.08 3.16 6.30 86.33 0.54 3.71 16 12 N -0.67 -30.25 5.98 -495.57 -2.96 -33.21 16 13 C 0.22 10.42 2.95 44.19 0.13 10.55 16 14 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 15 C -0.53 -28.04 6.47 25.60 0.17 -27.87 16 16 H 0.05 2.62 6.76 -2.91 -0.02 2.60 16 17 C 0.03 1.91 5.39 84.65 0.46 2.37 16 18 N -0.88 -51.64 12.77 21.45 0.27 -51.37 16 19 Si 0.93 43.51 29.54 68.60 2.03 45.54 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 23 C -0.12 -4.57 4.74 30.65 0.15 -4.42 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 2.12 7.24 -2.39 -0.02 2.10 16 27 H 0.20 3.58 8.06 -2.91 -0.02 3.55 16 28 H 0.06 1.85 7.94 -2.38 -0.02 1.84 16 29 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 2.18 6.99 -2.39 -0.02 2.16 16 32 H 0.31 12.41 8.86 -89.69 -0.79 11.62 16 33 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.75 7.94 -2.38 -0.02 1.74 16 Total: -1.00 -64.77 281.90 0.16 -64.62 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -1.60 Total: 19.10 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 3.45 Total: -23.05 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -3.71 Total: -106.20 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -64.77 0.16 -64.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259614462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.242 kcal (2) G-P(sol) polarization free energy of solvation -64.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds