Wall clock time and date at job start Mon Mar 30 2020 03:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35252 * 126.07437 * 2 1 4 4 C 1.40428 * 107.86448 * 179.97438 * 3 2 1 5 5 N 1.39985 * 125.97093 * 180.02562 * 4 3 2 6 6 C 1.47851 * 110.99722 * 205.75973 * 5 4 3 7 7 C 1.54903 * 104.79736 * 213.63698 * 6 5 4 8 8 C 1.55143 * 101.65290 * 37.06908 * 7 6 5 9 9 C 1.47441 * 111.00028 * 84.92259 * 5 4 3 10 10 H 1.09002 * 109.88504 * 242.82105 * 9 5 4 11 11 C 1.50692 * 109.89071 * 3.84566 * 9 5 4 12 12 H 1.08000 * 120.00272 * 64.91659 * 11 9 5 13 13 C 1.37878 * 120.00060 * 244.92190 * 11 9 5 14 14 N 1.31511 * 120.00016 * 184.79780 * 13 11 9 15 15 Si 1.86797 * 120.00131 * 4.79172 * 13 11 9 16 16 H 1.48506 * 109.47092 * 84.64048 * 15 13 11 17 17 H 1.48495 * 109.47422 * 204.64019 * 15 13 11 18 18 H 1.48495 * 109.47233 * 324.64327 * 15 13 11 19 19 N 1.31223 * 108.04967 * 0.02562 * 4 3 2 20 20 N 1.34969 * 126.06709 * 179.68652 * 2 1 3 21 21 C 1.46495 * 125.96936 * 0.02562 * 20 2 1 22 22 H 1.08995 * 109.47103 * 90.02721 * 1 2 3 23 23 H 1.08999 * 109.47075 * 330.02849 * 1 2 3 24 24 H 1.09005 * 109.47421 * 210.02616 * 1 2 3 25 25 H 1.08000 * 126.05960 * 359.97438 * 3 2 1 26 26 H 1.08995 * 110.37620 * 332.47054 * 6 5 4 27 27 H 1.09003 * 110.37135 * 94.80883 * 6 5 4 28 28 H 1.09008 * 110.99190 * 278.97860 * 7 6 5 29 29 H 1.09003 * 110.99331 * 155.16282 * 7 6 5 30 30 H 1.09003 * 110.70621 * 205.95961 * 8 7 6 31 31 H 1.09003 * 110.70043 * 82.73261 * 8 7 6 32 32 H 0.97006 * 120.00632 * 180.02562 * 14 13 11 33 33 H 1.09000 * 109.47130 * 89.99757 * 21 20 2 34 34 H 1.09002 * 109.47159 * 209.99813 * 21 20 2 35 35 H 1.09000 * 109.47293 * 329.99546 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3034 1.0932 0.0000 4 6 3.6373 0.6543 0.0006 5 7 4.7724 1.4736 0.0013 6 6 5.9298 0.7757 -0.5981 7 6 7.1585 1.3040 0.1834 8 6 6.5848 1.4332 1.6190 9 6 5.1289 1.8814 1.3726 10 1 5.0502 2.9642 1.4697 11 6 4.2114 1.2102 2.3619 12 1 4.2301 0.1361 2.4731 13 6 3.3481 1.9674 3.1251 14 7 2.6156 1.3931 4.0541 15 14 3.2190 3.8089 2.8395 16 1 2.2606 4.0727 1.7361 17 1 2.7398 4.4698 4.0799 18 1 4.5538 4.3481 2.4752 19 7 3.6336 -0.6579 0.0004 20 7 2.3016 -1.0910 0.0060 21 6 1.8497 -2.4845 0.0131 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 0.8902 0.5134 24 1 -0.3634 -0.8898 0.5143 25 1 1.9720 2.1211 -0.0004 26 1 5.8321 -0.3021 -0.4681 27 1 6.0170 1.0248 -1.6557 28 1 7.4767 2.2740 -0.1987 29 1 7.9783 0.5863 0.1536 30 1 7.1300 2.1883 2.1854 31 1 6.6106 0.4719 2.1323 32 1 2.0079 1.9257 4.5908 33 1 1.7380 -2.8355 -1.0128 34 1 2.5841 -3.1019 0.5304 35 1 0.8909 -2.5530 0.5270 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259726576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:52 Heat of formation + Delta-G solvation = 92.247959 kcal Electronic energy + Delta-G solvation = -17468.923268 eV Core-core repulsion = 14890.043800 eV Total energy + Delta-G solvation = -2578.879467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.37671 -37.82194 -32.78353 -32.50759 -31.22288 -29.70932 -28.88999 -26.20994 -25.19492 -24.12154 -20.97810 -20.27209 -19.09282 -18.17482 -17.06170 -15.88502 -15.12827 -14.82926 -14.62167 -13.87985 -13.38010 -12.83286 -12.79109 -12.52805 -12.42177 -12.25424 -12.17493 -11.82916 -11.69220 -11.28678 -10.94441 -10.77699 -10.42405 -10.29209 -9.85503 -9.65574 -9.55283 -9.20959 -8.65739 -8.19407 -7.52264 -7.11178 -6.07456 -4.06362 2.79707 3.31071 3.36560 3.39158 3.42222 3.91487 4.43748 4.85228 5.19816 5.31485 5.46629 5.53803 5.59752 5.63430 5.71527 5.78787 5.88002 5.90758 6.21387 6.21709 6.35515 6.41799 6.51689 6.68010 6.78613 6.83241 6.87840 7.09955 7.16382 7.31750 7.64933 7.94828 8.02674 8.40022 8.64304 8.86199 9.01263 9.56168 11.05095 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.013839 C = 0.009560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.992023 B = 2022.766740 C = 2928.165736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.072 3.928 3 C -0.233 4.233 4 C 0.322 3.678 5 N -0.470 5.470 6 C 0.042 3.958 7 C -0.133 4.133 8 C -0.127 4.127 9 C 0.163 3.837 10 H 0.062 0.938 11 C -0.514 4.514 12 H 0.076 0.924 13 C 0.087 3.913 14 N -0.891 5.891 15 Si 0.876 3.124 16 H -0.270 1.270 17 H -0.292 1.292 18 H -0.264 1.264 19 N -0.341 5.341 20 N -0.381 5.381 21 C 0.114 3.886 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.131 0.869 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.263 0.737 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 -2.624 -8.177 8.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.263 4.263 4 C 0.065 3.935 5 N -0.195 5.195 6 C -0.086 4.086 7 C -0.171 4.171 8 C -0.166 4.166 9 C 0.059 3.941 10 H 0.080 0.920 11 C -0.552 4.552 12 H 0.094 0.906 13 C -0.117 4.117 14 N -0.528 5.528 15 Si 0.704 3.296 16 H -0.196 1.196 17 H -0.219 1.219 18 H -0.190 1.190 19 N -0.167 5.167 20 N -0.165 5.165 21 C -0.028 4.028 22 H 0.087 0.913 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.149 0.851 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.954 -3.334 -8.324 9.017 hybrid contribution -0.525 0.971 0.591 1.252 sum -1.478 -2.363 -7.732 8.219 Atomic orbital electron populations 1.20306 0.88679 1.03242 1.01867 1.20645 0.93717 0.87427 1.03551 1.20674 0.91494 0.97960 1.16201 1.20114 0.92211 0.88056 0.93105 1.62038 1.01287 1.33661 1.22505 1.22882 0.89839 0.98039 0.97795 1.22712 0.96850 1.00323 0.97219 1.22878 0.97513 1.01418 0.94815 1.20646 0.92350 0.97268 0.83885 0.92045 1.21179 1.19090 0.95552 1.19423 0.90641 1.25007 0.94573 0.98098 0.94047 1.69917 1.25607 1.36221 1.21021 0.86898 0.78964 0.86237 0.77535 1.19551 1.21878 1.18951 1.77280 0.95871 1.13076 1.30464 1.47699 1.03699 1.04702 1.60441 1.21526 1.00307 0.79362 1.01623 0.91315 0.90256 0.91870 0.85104 0.92272 0.91946 0.91742 0.92103 0.92360 0.91656 0.92760 0.92237 0.90203 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.11 36.00 0.36 -0.87 16 2 C 0.07 1.47 6.92 -82.28 -0.57 0.90 16 3 C -0.23 -5.40 10.24 -39.82 -0.41 -5.81 16 4 C 0.32 7.79 4.32 -154.55 -0.67 7.12 16 5 N -0.47 -11.01 5.28 -163.40 -0.86 -11.88 16 6 C 0.04 0.85 6.65 -2.30 -0.02 0.84 16 7 C -0.13 -2.40 7.08 -24.59 -0.17 -2.57 16 8 C -0.13 -2.72 6.46 -24.91 -0.16 -2.88 16 9 C 0.16 4.01 3.29 -67.88 -0.22 3.79 16 10 H 0.06 1.55 4.53 -51.93 -0.24 1.32 16 11 C -0.51 -14.50 6.30 -34.44 -0.22 -14.72 16 12 H 0.08 2.43 7.80 -52.49 -0.41 2.02 16 13 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 14 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 15 Si 0.88 21.72 27.40 -169.99 -4.66 17.06 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.26 -6.31 6.19 56.52 0.35 -5.96 16 19 N -0.34 -8.08 11.03 31.41 0.35 -7.73 16 20 N -0.38 -7.83 4.01 -63.90 -0.26 -8.09 16 21 C 0.11 1.69 11.27 59.84 0.67 2.37 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.06 0.84 7.06 -51.93 -0.37 0.47 16 25 H 0.13 3.00 8.06 -52.49 -0.42 2.57 16 26 H 0.06 1.26 6.82 -51.93 -0.35 0.91 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.48 7.84 -51.93 -0.41 1.07 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 0.96 7.03 -51.93 -0.37 0.59 16 LS Contribution 282.77 15.07 4.26 4.26 Total: -1.00 -32.91 282.77 -7.02 -39.93 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.13 Total: 2.03 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.49 Total: -9.46 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.00 Total: -53.82 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.66 Total: 17.06 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.91 -7.02 -39.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259726576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.175 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds