Wall clock time and date at job start Mon Mar 30 2020 03:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35252 * 126.07437 * 2 1 4 4 C 1.40428 * 107.86448 * 179.97438 * 3 2 1 5 5 N 1.39985 * 125.97093 * 180.02562 * 4 3 2 6 6 C 1.47851 * 110.99722 * 205.75973 * 5 4 3 7 7 C 1.54903 * 104.79736 * 213.63698 * 6 5 4 8 8 C 1.55143 * 101.65290 * 37.06908 * 7 6 5 9 9 C 1.47441 * 111.00028 * 84.92259 * 5 4 3 10 10 H 1.09002 * 109.88504 * 242.82105 * 9 5 4 11 11 C 1.50692 * 109.89071 * 3.84566 * 9 5 4 12 12 H 1.08000 * 120.00272 * 64.91659 * 11 9 5 13 13 C 1.37878 * 120.00060 * 244.92190 * 11 9 5 14 14 N 1.31511 * 120.00016 * 184.79780 * 13 11 9 15 15 Si 1.86797 * 120.00131 * 4.79172 * 13 11 9 16 16 H 1.48506 * 109.47092 * 84.64048 * 15 13 11 17 17 H 1.48495 * 109.47422 * 204.64019 * 15 13 11 18 18 H 1.48495 * 109.47233 * 324.64327 * 15 13 11 19 19 N 1.31223 * 108.04967 * 0.02562 * 4 3 2 20 20 N 1.34969 * 126.06709 * 179.68652 * 2 1 3 21 21 C 1.46495 * 125.96936 * 0.02562 * 20 2 1 22 22 H 1.08995 * 109.47103 * 90.02721 * 1 2 3 23 23 H 1.08999 * 109.47075 * 330.02849 * 1 2 3 24 24 H 1.09005 * 109.47421 * 210.02616 * 1 2 3 25 25 H 1.08000 * 126.05960 * 359.97438 * 3 2 1 26 26 H 1.08995 * 110.37620 * 332.47054 * 6 5 4 27 27 H 1.09003 * 110.37135 * 94.80883 * 6 5 4 28 28 H 1.09008 * 110.99190 * 278.97860 * 7 6 5 29 29 H 1.09003 * 110.99331 * 155.16282 * 7 6 5 30 30 H 1.09003 * 110.70621 * 205.95961 * 8 7 6 31 31 H 1.09003 * 110.70043 * 82.73261 * 8 7 6 32 32 H 0.97006 * 120.00632 * 180.02562 * 14 13 11 33 33 H 1.09000 * 109.47130 * 89.99757 * 21 20 2 34 34 H 1.09002 * 109.47159 * 209.99813 * 21 20 2 35 35 H 1.09000 * 109.47293 * 329.99546 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3034 1.0932 0.0000 4 6 3.6373 0.6543 0.0006 5 7 4.7724 1.4736 0.0013 6 6 5.9298 0.7757 -0.5981 7 6 7.1585 1.3040 0.1834 8 6 6.5848 1.4332 1.6190 9 6 5.1289 1.8814 1.3726 10 1 5.0502 2.9642 1.4697 11 6 4.2114 1.2102 2.3619 12 1 4.2301 0.1361 2.4731 13 6 3.3481 1.9674 3.1251 14 7 2.6156 1.3931 4.0541 15 14 3.2190 3.8089 2.8395 16 1 2.2606 4.0727 1.7361 17 1 2.7398 4.4698 4.0799 18 1 4.5538 4.3481 2.4752 19 7 3.6336 -0.6579 0.0004 20 7 2.3016 -1.0910 0.0060 21 6 1.8497 -2.4845 0.0131 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 0.8902 0.5134 24 1 -0.3634 -0.8898 0.5143 25 1 1.9720 2.1211 -0.0004 26 1 5.8321 -0.3021 -0.4681 27 1 6.0170 1.0248 -1.6557 28 1 7.4767 2.2740 -0.1987 29 1 7.9783 0.5863 0.1536 30 1 7.1300 2.1883 2.1854 31 1 6.6106 0.4719 2.1323 32 1 2.0079 1.9257 4.5908 33 1 1.7380 -2.8355 -1.0128 34 1 2.5841 -3.1019 0.5304 35 1 0.8909 -2.5530 0.5270 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259726576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:52 Heat of formation + Delta-G solvation = 69.209619 kcal Electronic energy + Delta-G solvation = -17469.922285 eV Core-core repulsion = 14890.043800 eV Total energy + Delta-G solvation = -2579.878485 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.03464 -39.53544 -34.64724 -34.33437 -32.67755 -31.29832 -30.78620 -27.70944 -26.66233 -26.09857 -22.66516 -21.94389 -20.76857 -19.95030 -19.09222 -17.52389 -16.82589 -16.51408 -16.12049 -15.82155 -14.84546 -14.70972 -14.24592 -14.16480 -14.02869 -13.84841 -13.78266 -13.20923 -13.10442 -12.84262 -12.68578 -12.52662 -12.05903 -11.92954 -11.77495 -11.53885 -11.40363 -11.08910 -10.77546 -9.93498 -9.23785 -8.84599 -8.26783 -6.28812 1.17766 1.34726 1.39023 1.45797 1.88593 2.15681 2.36272 2.96564 3.53089 3.87439 3.96501 4.03805 4.13322 4.30500 4.38695 4.46154 4.62808 4.64095 4.67231 4.79226 4.83221 4.94753 5.04883 5.06605 5.10191 5.17536 5.21632 5.33972 5.47792 5.54786 5.67367 6.20754 6.30335 6.47889 6.66127 6.82518 7.15292 7.36065 8.89858 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.013839 C = 0.009560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.992023 B = 2022.766740 C = 2928.165736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.081 3.919 3 C -0.278 4.278 4 C 0.301 3.699 5 N -0.476 5.476 6 C 0.039 3.961 7 C -0.116 4.116 8 C -0.128 4.128 9 C 0.160 3.840 10 H 0.060 0.940 11 C -0.503 4.503 12 H 0.021 0.979 13 C 0.038 3.962 14 N -0.938 5.938 15 Si 0.933 3.067 16 H -0.264 1.264 17 H -0.289 1.289 18 H -0.246 1.246 19 N -0.373 5.373 20 N -0.383 5.383 21 C 0.103 3.897 22 H 0.103 0.897 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.123 0.877 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 -2.052 -9.661 9.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 C -0.309 4.309 4 C 0.045 3.955 5 N -0.200 5.200 6 C -0.088 4.088 7 C -0.154 4.154 8 C -0.167 4.167 9 C 0.054 3.946 10 H 0.078 0.922 11 C -0.542 4.542 12 H 0.039 0.961 13 C -0.162 4.162 14 N -0.578 5.578 15 Si 0.758 3.242 16 H -0.189 1.189 17 H -0.215 1.215 18 H -0.170 1.170 19 N -0.200 5.200 20 N -0.168 5.168 21 C -0.038 4.038 22 H 0.121 0.879 23 H 0.096 0.904 24 H 0.103 0.897 25 H 0.141 0.859 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.976 -2.787 -9.827 10.261 hybrid contribution -0.559 0.607 1.018 1.310 sum -1.535 -2.180 -8.810 9.204 Atomic orbital electron populations 1.20480 0.84717 1.04193 1.04366 1.21389 0.96077 0.86600 1.00567 1.20842 0.91941 0.98647 1.19448 1.20341 0.92795 0.88454 0.93903 1.61939 1.02235 1.34490 1.21362 1.23010 0.89705 0.96863 0.99223 1.22691 0.96442 1.02325 0.93899 1.22795 0.96040 1.00576 0.97334 1.20632 0.93372 0.96730 0.83820 0.92242 1.21089 1.19966 0.92979 1.20185 0.96083 1.25716 0.94139 1.02652 0.93674 1.70051 1.27049 1.38063 1.22590 0.85973 0.79918 0.80739 0.77583 1.18934 1.21488 1.16991 1.77164 0.98190 1.13135 1.31490 1.48178 1.02837 1.06755 1.59000 1.21969 1.01239 0.76485 1.04096 0.87867 0.90436 0.89738 0.85858 0.94147 0.89674 0.89257 0.89378 0.90512 0.94072 0.92700 0.88993 0.90706 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.18 10.11 71.23 0.72 -1.46 16 2 C 0.08 3.26 6.92 41.39 0.29 3.55 16 3 C -0.28 -13.09 10.24 22.11 0.23 -12.86 16 4 C 0.30 14.81 4.32 133.39 0.58 15.38 16 5 N -0.48 -22.23 5.28 -670.89 -3.55 -25.78 16 6 C 0.04 1.54 6.65 86.77 0.58 2.12 16 7 C -0.12 -3.88 7.08 31.98 0.23 -3.65 16 8 C -0.13 -5.38 6.46 31.78 0.21 -5.17 16 9 C 0.16 7.86 3.29 44.51 0.15 8.01 16 10 H 0.06 2.93 4.53 -2.39 -0.01 2.92 16 11 C -0.50 -29.32 6.30 25.60 0.16 -29.16 16 12 H 0.02 1.43 7.80 -2.91 -0.02 1.40 16 13 C 0.04 2.20 5.47 84.66 0.46 2.66 16 14 N -0.94 -58.38 13.96 21.45 0.30 -58.08 16 15 Si 0.93 44.90 27.40 68.60 1.88 46.78 16 16 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 18 H -0.25 -10.99 6.19 99.48 0.62 -10.38 16 19 N -0.37 -18.02 11.03 -54.55 -0.60 -18.62 16 20 N -0.38 -15.60 4.01 -356.08 -1.43 -17.03 16 21 C 0.10 2.85 11.27 127.77 1.44 4.29 16 22 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.08 1.96 7.06 -2.38 -0.02 1.95 16 25 H 0.12 5.77 8.06 -2.91 -0.02 5.75 16 26 H 0.04 1.72 6.82 -2.39 -0.02 1.71 16 27 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.04 1.89 7.84 -2.39 -0.02 1.87 16 32 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 35 H 0.10 2.31 7.03 -2.39 -0.02 2.29 16 Total: -1.00 -74.79 282.77 2.61 -72.18 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.98 Total: 16.85 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 5.03 Total: -16.30 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -5.28 Total: -119.51 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -74.79 2.61 -72.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259726576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.394 kcal (2) G-P(sol) polarization free energy of solvation -74.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds