Wall clock time and date at job start Mon Mar 30 2020 03:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32294 * 120.39903 * 2 1 4 4 C 1.32486 * 120.73605 * 180.27570 * 3 2 1 5 5 N 1.38403 * 119.21247 * 179.71623 * 4 3 2 6 6 C 1.46506 * 119.99857 * 179.73439 * 5 4 3 7 7 C 1.46499 * 120.00149 * 359.45666 * 5 4 3 8 8 N 1.32507 * 121.56476 * 359.44139 * 4 3 2 9 9 C 1.32261 * 120.74082 * 0.27461 * 8 4 3 10 10 C 1.38585 * 120.40109 * 179.72354 * 2 1 3 11 11 C 1.50694 * 120.71989 * 359.97438 * 10 2 1 12 12 H 1.09006 * 109.47489 * 0.02562 * 11 10 2 13 13 C 1.53002 * 109.47364 * 240.01679 * 11 10 2 14 14 C 1.50699 * 109.47582 * 120.01782 * 11 10 2 15 15 H 1.08004 * 119.99351 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00763 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99634 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00355 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.47047 * 89.99906 * 18 16 14 20 20 H 1.48497 * 109.47104 * 209.99644 * 18 16 14 21 21 H 1.48498 * 109.47036 * 330.00168 * 18 16 14 22 22 H 1.08999 * 109.46762 * 270.27532 * 1 2 3 23 23 H 1.08997 * 109.46921 * 30.27311 * 1 2 3 24 24 H 1.08998 * 109.46890 * 150.27429 * 1 2 3 25 25 H 1.08999 * 109.46892 * 269.72625 * 6 5 4 26 26 H 1.09000 * 109.46803 * 29.71798 * 6 5 4 27 27 H 1.09000 * 109.47214 * 149.72592 * 6 5 4 28 28 H 1.09004 * 109.46973 * 180.27857 * 7 5 4 29 29 H 1.08995 * 109.47424 * 300.27245 * 7 5 4 30 30 H 1.08998 * 109.47492 * 60.27670 * 7 5 4 31 31 H 1.08000 * 120.40003 * 179.97438 * 9 8 4 32 32 H 1.09003 * 109.46496 * 59.99597 * 13 11 10 33 33 H 1.08994 * 109.47699 * 179.97438 * 13 11 10 34 34 H 1.08996 * 109.46814 * 300.00301 * 13 11 10 35 35 H 0.96999 * 120.00128 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1411 0.0000 4 6 3.5013 1.1489 -0.0055 5 7 4.1696 2.3608 -0.0113 6 6 5.6344 2.3896 -0.0115 7 6 3.4124 3.6149 -0.0234 8 7 4.2016 0.0240 -0.0001 9 6 3.5938 -1.1507 0.0055 10 6 2.2084 -1.1953 0.0058 11 6 1.4806 -2.5148 0.0127 12 1 0.4052 -2.3367 0.0118 13 6 1.8659 -3.3033 1.2660 14 6 1.8598 -3.3042 -1.2137 15 1 2.5578 -2.8914 -1.9270 16 6 1.3150 -4.5530 -1.4256 17 7 0.4647 -5.0554 -0.5572 18 14 1.7847 -5.5311 -2.9461 19 1 2.9709 -6.3727 -2.6465 20 1 0.6491 -6.4005 -3.3457 21 1 2.1075 -4.5976 -4.0550 22 1 -0.3633 0.0049 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3633 -0.8924 -0.5096 25 1 5.9976 2.4065 1.0161 26 1 6.0151 1.5019 -0.5168 27 1 5.9803 3.2816 -0.5339 28 1 4.1044 4.4571 -0.0314 29 1 2.7849 3.6519 -0.9137 30 1 2.7847 3.6689 0.8661 31 1 4.1700 -2.0642 0.0095 32 1 1.5916 -2.7322 2.1530 33 1 1.3392 -4.2575 1.2713 34 1 2.9412 -3.4814 1.2668 35 1 0.0811 -5.9337 -0.7064 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259854825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:07 Heat of formation + Delta-G solvation = 51.959524 kcal Electronic energy + Delta-G solvation = -16658.867581 eV Core-core repulsion = 14078.241076 eV Total energy + Delta-G solvation = -2580.626505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.37453 -36.70851 -34.46929 -33.55391 -31.69698 -29.34637 -28.11947 -27.21242 -25.26676 -24.93899 -22.63157 -21.35249 -19.70853 -17.32354 -16.73325 -15.98887 -15.28099 -14.85681 -14.27076 -13.89383 -13.71317 -13.27285 -12.74466 -12.46683 -12.43473 -12.30474 -12.09830 -11.83690 -11.73585 -11.48332 -11.19620 -10.89779 -10.83734 -10.37581 -10.12990 -9.76578 -9.43359 -9.28168 -8.86024 -8.47010 -8.24452 -7.16805 -6.03796 -4.10938 1.87254 2.04360 3.09244 3.28572 3.35737 3.39739 4.39458 4.61842 4.75072 5.04935 5.26665 5.35651 5.43938 5.48928 5.55396 5.80116 5.86843 5.93797 5.95552 6.09327 6.18390 6.27430 6.51226 6.62121 6.84893 6.90839 7.13630 7.24732 7.28448 7.54213 7.66684 7.87791 7.98749 8.11057 8.35718 8.91144 8.95692 9.54209 11.01234 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.034434 B = 0.006674 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.944213 B = 4194.448754 C = 4487.037893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.192 3.808 3 N -0.571 5.571 4 C 0.534 3.466 5 N -0.608 5.608 6 C 0.111 3.889 7 C 0.118 3.882 8 N -0.575 5.575 9 C 0.185 3.815 10 C -0.184 4.184 11 C 0.084 3.916 12 H 0.045 0.955 13 C -0.132 4.132 14 C -0.509 4.509 15 H 0.055 0.945 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.275 1.275 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.094 0.906 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.164 0.836 32 H 0.007 0.993 33 H 0.087 0.913 34 H 0.027 0.973 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 11.594 1.854 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.046 3.954 3 N -0.294 5.294 4 C 0.178 3.822 5 N -0.329 5.329 6 C -0.032 4.032 7 C -0.026 4.026 8 N -0.297 5.297 9 C 0.020 3.980 10 C -0.190 4.190 11 C 0.064 3.936 12 H 0.063 0.937 13 C -0.190 4.190 14 C -0.548 4.548 15 H 0.073 0.927 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.200 1.200 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.112 0.888 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.181 0.819 32 H 0.026 0.974 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.683 12.460 1.885 13.444 hybrid contribution -0.075 -1.370 -0.834 1.606 sum 4.608 11.090 1.051 12.055 Atomic orbital electron populations 1.20759 0.88640 1.03742 1.02830 1.21272 0.96731 0.87099 0.90289 1.67565 1.07484 1.31398 1.22911 1.19039 0.85288 0.86055 0.91808 1.45546 1.05203 1.01761 1.80410 1.21483 0.78425 1.02458 1.00881 1.21378 0.95695 0.83644 1.01847 1.67794 1.41222 0.98141 1.22587 1.22791 0.92365 0.93871 0.88994 1.21874 0.95714 0.98721 1.02699 1.17749 0.95277 0.85820 0.94737 0.93728 1.21798 0.99499 1.02505 0.95181 1.21116 1.26583 1.01129 1.05934 0.92720 1.24927 0.94891 0.97470 0.96428 1.69874 1.29907 1.17722 1.35196 0.86603 0.78084 0.80036 0.83376 1.20615 1.21198 1.19991 0.90680 0.91348 0.88781 0.93883 0.90390 0.92178 0.91540 0.92827 0.92837 0.81856 0.97402 0.89468 0.95409 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.63 36.01 0.35 -1.43 16 2 C 0.19 3.93 6.82 -82.26 -0.56 3.37 16 3 N -0.57 -11.46 9.52 -10.15 -0.10 -11.55 16 4 C 0.53 10.47 8.17 -322.80 -2.64 7.83 16 5 N -0.61 -9.60 3.37 -191.89 -0.65 -10.25 16 6 C 0.11 1.40 10.41 59.85 0.62 2.02 16 7 C 0.12 1.47 10.14 59.85 0.61 2.08 16 8 N -0.58 -11.72 9.11 -13.93 -0.13 -11.85 16 9 C 0.19 3.91 10.05 -17.23 -0.17 3.74 16 10 C -0.18 -4.02 4.75 -104.36 -0.50 -4.52 16 11 C 0.08 2.00 2.31 -92.93 -0.21 1.79 16 12 H 0.04 1.11 5.61 -51.93 -0.29 0.82 16 13 C -0.13 -3.08 8.79 37.16 0.33 -2.75 16 14 C -0.51 -13.41 8.27 -34.44 -0.28 -13.69 16 15 H 0.05 1.46 7.62 -52.48 -0.40 1.06 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -24.28 11.32 55.43 0.63 -23.65 16 18 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.09 1.72 6.19 -51.93 -0.32 1.40 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.09 7.32 -51.93 -0.38 0.71 16 27 H 0.06 0.57 7.92 -51.93 -0.41 0.16 16 28 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.16 3.30 7.66 -52.49 -0.40 2.90 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 34 H 0.03 0.61 7.47 -51.93 -0.39 0.22 16 35 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 289.66 15.07 4.37 4.37 Total: -1.00 -29.40 289.66 -8.44 -37.84 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -4.99 Total: -0.75 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -2.56 Total: 0.06 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.24 Total: -57.30 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.40 -8.44 -37.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259854825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.800 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds