Wall clock time and date at job start Mon Mar 30 2020 03:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32294 * 120.39903 * 2 1 4 4 C 1.32486 * 120.73605 * 180.27570 * 3 2 1 5 5 N 1.38403 * 119.21247 * 179.71623 * 4 3 2 6 6 C 1.46506 * 119.99857 * 179.73439 * 5 4 3 7 7 C 1.46499 * 120.00149 * 359.45666 * 5 4 3 8 8 N 1.32507 * 121.56476 * 359.44139 * 4 3 2 9 9 C 1.32261 * 120.74082 * 0.27461 * 8 4 3 10 10 C 1.38585 * 120.40109 * 179.72354 * 2 1 3 11 11 C 1.50694 * 120.71989 * 359.97438 * 10 2 1 12 12 H 1.09006 * 109.47489 * 0.02562 * 11 10 2 13 13 C 1.53002 * 109.47364 * 240.01679 * 11 10 2 14 14 C 1.50699 * 109.47582 * 120.01782 * 11 10 2 15 15 H 1.08004 * 119.99351 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00763 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99634 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00355 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.47047 * 89.99906 * 18 16 14 20 20 H 1.48497 * 109.47104 * 209.99644 * 18 16 14 21 21 H 1.48498 * 109.47036 * 330.00168 * 18 16 14 22 22 H 1.08999 * 109.46762 * 270.27532 * 1 2 3 23 23 H 1.08997 * 109.46921 * 30.27311 * 1 2 3 24 24 H 1.08998 * 109.46890 * 150.27429 * 1 2 3 25 25 H 1.08999 * 109.46892 * 269.72625 * 6 5 4 26 26 H 1.09000 * 109.46803 * 29.71798 * 6 5 4 27 27 H 1.09000 * 109.47214 * 149.72592 * 6 5 4 28 28 H 1.09004 * 109.46973 * 180.27857 * 7 5 4 29 29 H 1.08995 * 109.47424 * 300.27245 * 7 5 4 30 30 H 1.08998 * 109.47492 * 60.27670 * 7 5 4 31 31 H 1.08000 * 120.40003 * 179.97438 * 9 8 4 32 32 H 1.09003 * 109.46496 * 59.99597 * 13 11 10 33 33 H 1.08994 * 109.47699 * 179.97438 * 13 11 10 34 34 H 1.08996 * 109.46814 * 300.00301 * 13 11 10 35 35 H 0.96999 * 120.00128 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1411 0.0000 4 6 3.5013 1.1489 -0.0055 5 7 4.1696 2.3608 -0.0113 6 6 5.6344 2.3896 -0.0115 7 6 3.4124 3.6149 -0.0234 8 7 4.2016 0.0240 -0.0001 9 6 3.5938 -1.1507 0.0055 10 6 2.2084 -1.1953 0.0058 11 6 1.4806 -2.5148 0.0127 12 1 0.4052 -2.3367 0.0118 13 6 1.8659 -3.3033 1.2660 14 6 1.8598 -3.3042 -1.2137 15 1 2.5578 -2.8914 -1.9270 16 6 1.3150 -4.5530 -1.4256 17 7 0.4647 -5.0554 -0.5572 18 14 1.7847 -5.5311 -2.9461 19 1 2.9709 -6.3727 -2.6465 20 1 0.6491 -6.4005 -3.3457 21 1 2.1075 -4.5976 -4.0550 22 1 -0.3633 0.0049 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3633 -0.8924 -0.5096 25 1 5.9976 2.4065 1.0161 26 1 6.0151 1.5019 -0.5168 27 1 5.9803 3.2816 -0.5339 28 1 4.1044 4.4571 -0.0314 29 1 2.7849 3.6519 -0.9137 30 1 2.7847 3.6689 0.8661 31 1 4.1700 -2.0642 0.0095 32 1 1.5916 -2.7322 2.1530 33 1 1.3392 -4.2575 1.2713 34 1 2.9412 -3.4814 1.2668 35 1 0.0811 -5.9337 -0.7064 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259854825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:07 Heat of formation + Delta-G solvation = 37.103325 kcal Electronic energy + Delta-G solvation = -16659.511794 eV Core-core repulsion = 14078.241076 eV Total energy + Delta-G solvation = -2581.270718 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.90554 -38.07766 -36.19773 -35.08875 -33.52545 -30.94395 -29.38547 -28.49578 -27.18190 -26.44827 -24.13508 -22.91061 -21.38300 -18.92600 -18.12852 -17.84291 -16.77627 -16.59919 -15.48988 -15.46389 -15.07767 -14.90958 -14.50618 -13.97465 -13.69363 -13.54151 -13.42107 -13.19487 -13.04694 -13.04131 -12.77929 -12.73743 -12.65503 -12.20992 -12.03971 -11.31987 -11.18417 -11.04488 -10.47667 -10.41961 -9.89091 -8.60107 -8.05022 -6.18710 0.29149 0.45606 1.43175 1.45648 1.54185 1.85655 2.45973 3.04263 3.21496 3.29752 3.76532 3.93345 4.30032 4.36194 4.49359 4.51679 4.57520 4.75459 4.78359 4.82054 4.92573 4.95338 4.95911 5.05497 5.16057 5.21320 5.30199 5.59687 5.64619 5.93466 6.03531 6.08379 6.12886 6.38329 6.54752 6.88243 7.43172 7.48793 8.97894 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.034434 B = 0.006674 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.944213 B = 4194.448754 C = 4487.037893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.190 3.810 3 N -0.575 5.575 4 C 0.523 3.477 5 N -0.606 5.606 6 C 0.106 3.894 7 C 0.114 3.886 8 N -0.583 5.583 9 C 0.182 3.818 10 C -0.210 4.210 11 C 0.089 3.911 12 H 0.032 0.968 13 C -0.122 4.122 14 C -0.521 4.521 15 H 0.044 0.956 16 C 0.023 3.977 17 N -0.911 5.911 18 Si 0.947 3.053 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.276 1.276 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.164 0.836 32 H 0.021 0.979 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.933 13.256 1.625 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.044 3.956 3 N -0.299 5.299 4 C 0.167 3.833 5 N -0.326 5.326 6 C -0.036 4.036 7 C -0.028 4.028 8 N -0.306 5.306 9 C 0.017 3.983 10 C -0.217 4.217 11 C 0.069 3.931 12 H 0.050 0.950 13 C -0.180 4.180 14 C -0.559 4.559 15 H 0.062 0.938 16 C -0.177 4.177 17 N -0.550 5.550 18 Si 0.773 3.227 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.201 1.201 22 H 0.110 0.890 23 H 0.106 0.894 24 H 0.098 0.902 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.181 0.819 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.411 14.167 1.659 15.255 hybrid contribution -0.237 -1.750 -0.745 1.917 sum 5.173 12.417 0.913 13.483 Atomic orbital electron populations 1.20760 0.86763 1.03881 1.03971 1.21683 0.98105 0.86836 0.89012 1.67693 1.07741 1.30805 1.23653 1.19604 0.85574 0.87253 0.90908 1.46042 1.06626 1.01325 1.78609 1.21694 0.76548 1.03497 1.01857 1.21597 0.96544 0.83380 1.01319 1.67859 1.41105 0.98172 1.23497 1.22816 0.92261 0.94445 0.88796 1.21684 0.96046 0.98303 1.05666 1.17571 0.94691 0.86800 0.94003 0.95035 1.21649 0.99212 1.01411 0.95740 1.21334 1.26274 1.01632 1.06660 0.93815 1.25560 0.94970 0.98347 0.98790 1.69977 1.30616 1.17997 1.36432 0.85728 0.77896 0.78690 0.80349 1.20126 1.20787 1.20139 0.88964 0.89440 0.90217 0.92913 0.92113 0.88385 0.87432 0.93415 0.93251 0.81869 0.95981 0.91788 0.95217 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.26 9.63 71.24 0.69 -2.57 16 2 C 0.19 7.68 6.82 42.57 0.29 7.97 16 3 N -0.58 -22.42 9.52 -186.03 -1.77 -24.19 16 4 C 0.52 19.86 8.17 261.48 2.14 21.99 16 5 N -0.61 -17.66 3.37 -761.02 -2.57 -20.22 16 6 C 0.11 2.37 10.41 127.77 1.33 3.70 16 7 C 0.11 2.49 10.14 127.77 1.30 3.79 16 8 N -0.58 -23.46 9.11 -197.98 -1.80 -25.26 16 9 C 0.18 7.74 10.05 84.72 0.85 8.59 16 10 C -0.21 -9.25 4.75 -19.69 -0.09 -9.34 16 11 C 0.09 4.31 2.31 -12.29 -0.03 4.29 16 12 H 0.03 1.60 5.61 -2.38 -0.01 1.59 16 13 C -0.12 -5.76 8.79 71.98 0.63 -5.13 16 14 C -0.52 -27.78 8.27 25.60 0.21 -27.57 16 15 H 0.04 2.37 7.62 -2.91 -0.02 2.35 16 16 C 0.02 1.21 5.30 84.65 0.45 1.66 16 17 N -0.91 -50.28 11.32 21.45 0.24 -50.04 16 18 Si 0.95 42.82 29.54 68.60 2.03 44.84 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 23 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 24 H 0.08 2.93 6.19 -2.39 -0.01 2.92 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.59 7.32 -2.39 -0.02 1.57 16 27 H 0.10 1.45 7.92 -2.39 -0.02 1.44 16 28 H 0.11 1.47 7.79 -2.38 -0.02 1.45 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.16 6.72 7.66 -2.91 -0.02 6.70 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 33 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 34 H 0.03 1.33 7.47 -2.39 -0.02 1.31 16 35 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -62.31 289.66 4.96 -57.35 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.07 Total: 10.15 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 7.76 Total: 7.38 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -5.90 Total: -119.72 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -62.31 4.96 -57.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259854825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.448 kcal (2) G-P(sol) polarization free energy of solvation -62.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds