Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00737 * 2 1 4 4 H 1.48501 * 109.47251 * 264.77818 * 3 2 1 5 5 H 1.48507 * 109.46858 * 24.77155 * 3 2 1 6 6 H 1.48494 * 109.47307 * 144.77043 * 3 2 1 7 7 C 1.37883 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99685 * 5.83336 * 7 2 1 9 9 C 1.50700 * 120.00443 * 185.83675 * 7 2 1 10 10 H 1.09002 * 109.44969 * 335.27237 * 9 7 2 11 11 C 1.53038 * 109.46175 * 95.24631 * 9 7 2 12 12 C 1.53120 * 109.27419 * 179.19662 * 11 9 7 13 13 C 1.53117 * 109.16235 * 302.34497 * 12 11 9 14 14 C 1.53040 * 109.27957 * 57.65688 * 13 12 11 15 15 N 1.46847 * 109.52144 * 300.82124 * 14 13 12 16 16 C 1.46904 * 111.00099 * 185.83785 * 15 14 13 17 17 C 1.50702 * 109.46964 * 45.78763 * 16 15 14 18 18 C 1.39865 * 126.03629 * 90.02595 * 17 16 15 19 19 N 1.30833 * 108.20286 * 179.71877 * 18 17 16 20 20 N 1.40086 * 108.20496 * 0.24733 * 19 18 17 21 21 H 0.96999 * 126.03954 * 180.02562 * 20 19 18 22 22 C 1.34948 * 107.92583 * 359.97438 * 20 19 18 23 23 H 0.97003 * 119.99633 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.50516 * 299.13744 * 11 9 7 25 25 H 1.09003 * 109.49966 * 59.25807 * 11 9 7 26 26 H 1.08999 * 109.52727 * 62.25023 * 12 11 9 27 27 H 1.09000 * 109.51850 * 182.44077 * 12 11 9 28 28 H 1.08998 * 109.50465 * 177.59706 * 13 12 11 29 29 H 1.08998 * 109.50558 * 297.67837 * 13 12 11 30 30 H 1.08997 * 109.46399 * 180.80441 * 14 13 12 31 31 H 1.08996 * 109.46351 * 60.83497 * 14 13 12 32 32 H 1.08996 * 109.46708 * 285.79136 * 16 15 14 33 33 H 1.08997 * 109.47105 * 165.79278 * 16 15 14 34 34 H 1.08007 * 125.90370 * 359.97438 * 18 17 16 35 35 H 1.08000 * 126.13084 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6072 1.9826 -1.3943 5 1 1.3959 2.6820 0.5867 6 1 3.4871 1.4744 0.8076 7 6 2.0045 -1.1941 0.0005 8 1 1.4686 -2.1270 -0.0941 9 6 3.5056 -1.1976 0.1333 10 1 3.9030 -0.2443 -0.2154 11 6 3.8872 -1.4029 1.6010 12 6 5.4130 -1.4258 1.7281 13 6 5.9749 -2.5376 0.8378 14 6 5.5327 -2.2994 -0.6079 15 7 4.0659 -2.2869 -0.6766 16 6 3.6048 -2.1988 -2.0686 17 6 4.3821 -3.1714 -2.9177 18 6 4.0322 -4.5008 -3.1758 19 7 4.9458 -5.0199 -3.9553 20 7 5.9105 -4.0376 -4.2136 21 1 6.7022 -4.1458 -4.7634 22 6 5.5431 -2.9136 -3.5632 23 1 -0.4850 0.8401 -0.0004 24 1 3.4844 -0.5859 2.1995 25 1 3.4784 -2.3496 1.9542 26 1 5.8194 -0.4652 1.4114 27 1 5.6892 -1.6151 2.7653 28 1 7.0635 -2.5312 0.8910 29 1 5.5994 -3.5022 1.1794 30 1 5.9192 -3.0971 -1.2420 31 1 5.9206 -1.3410 -0.9531 32 1 3.7619 -1.1862 -2.4400 33 1 2.5435 -2.4426 -2.1160 34 1 3.1566 -5.0096 -2.8003 35 1 6.0781 -1.9754 -3.5611 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259867519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = 73.524678 kcal Electronic energy + Delta-G solvation = -17087.315851 eV Core-core repulsion = 14507.624481 eV Total energy + Delta-G solvation = -2579.691370 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97292 -38.11718 -33.38934 -32.77579 -31.15804 -30.35799 -29.46198 -25.86058 -24.74002 -22.10414 -21.71915 -20.93522 -19.63957 -18.78612 -17.30384 -16.86856 -15.42570 -14.27570 -14.24169 -14.17266 -13.86672 -13.67471 -13.23022 -12.73973 -12.70320 -12.41789 -12.19993 -11.71829 -11.13497 -10.99650 -10.75258 -10.68612 -10.36974 -10.20100 -9.80018 -9.75743 -9.55230 -9.35724 -8.96694 -8.54452 -8.20390 -7.15215 -6.07826 -4.05815 2.09901 3.08032 3.10451 3.25514 3.35119 3.36727 4.40273 4.96283 5.11391 5.12344 5.25550 5.51342 5.57736 5.69845 5.78248 5.85175 6.05340 6.14780 6.21741 6.26748 6.42523 6.50948 6.60009 6.65026 6.70909 6.81205 6.92346 6.97611 7.11621 7.35185 7.44606 7.67311 7.88728 8.11297 8.20966 8.70749 9.04038 9.56828 11.05158 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024887 B = 0.008911 C = 0.007509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.795106 B = 3141.560371 C = 3727.975155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.868 3.132 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.502 4.502 8 H 0.082 0.918 9 C 0.187 3.813 10 H 0.000 1.000 11 C -0.104 4.104 12 C -0.126 4.126 13 C -0.111 4.111 14 C 0.053 3.947 15 N -0.523 5.523 16 C 0.144 3.856 17 C -0.213 4.213 18 C 0.070 3.930 19 N -0.308 5.308 20 N -0.486 5.486 21 H 0.433 0.567 22 C 0.048 3.952 23 H 0.263 0.737 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.013 0.987 32 H 0.027 0.973 33 H 0.095 0.905 34 H 0.184 0.816 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.349 -3.487 -4.274 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.696 3.304 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.541 4.541 8 H 0.100 0.900 9 C 0.080 3.920 10 H 0.017 0.983 11 C -0.142 4.142 12 C -0.163 4.163 13 C -0.149 4.149 14 C -0.075 4.075 15 N -0.248 5.248 16 C 0.016 3.984 17 C -0.225 4.225 18 C -0.116 4.116 19 N -0.131 5.131 20 N -0.194 5.194 21 H 0.276 0.724 22 C -0.100 4.100 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.031 0.969 32 H 0.045 0.955 33 H 0.113 0.887 34 H 0.201 0.799 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 12.355 -4.832 -4.681 14.068 hybrid contribution 0.919 2.563 -0.144 2.727 sum 13.274 -2.268 -4.825 14.304 Atomic orbital electron populations 1.69890 1.06124 1.26839 1.50560 1.24985 0.94640 0.98572 0.94663 0.86996 0.80372 0.84363 0.78678 1.20400 1.21501 1.19057 1.20939 0.88698 0.94723 1.49702 0.89987 1.19713 0.95580 0.87215 0.89489 0.98262 1.21765 0.92011 1.01550 0.98900 1.21708 0.98512 0.97803 0.98316 1.21518 0.98197 0.99559 0.95589 1.22097 0.90656 0.98555 0.96242 1.62107 1.05267 1.48296 1.09122 1.20197 0.99060 0.93453 0.85721 1.20434 0.98380 0.96886 1.06782 1.23858 0.98324 0.93861 0.95604 1.77266 1.01135 1.13367 1.21301 1.46219 1.22370 1.08879 1.41915 0.72382 1.22385 0.97803 0.92404 0.97397 0.92658 0.92824 0.91840 0.93463 0.93250 0.93265 0.91597 0.91649 0.96876 0.95469 0.88678 0.79894 0.81435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 21.07 27.02 -169.99 -4.59 16.48 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.24 6.78 56.52 0.38 -5.85 16 7 C -0.50 -13.50 7.58 -34.44 -0.26 -13.76 16 8 H 0.08 2.43 8.00 -52.48 -0.42 2.01 16 9 C 0.19 4.30 1.48 -68.87 -0.10 4.19 16 10 H 0.00 0.00 5.24 -51.93 -0.27 -0.28 16 11 C -0.10 -2.19 5.36 -26.65 -0.14 -2.34 16 12 C -0.13 -2.20 6.00 -26.61 -0.16 -2.36 16 13 C -0.11 -1.80 6.09 -26.65 -0.16 -1.96 16 14 C 0.05 0.92 4.75 -3.83 -0.02 0.90 16 15 N -0.52 -10.63 4.63 -229.51 -1.06 -11.69 16 16 C 0.14 2.78 5.15 -4.97 -0.03 2.75 16 17 C -0.21 -3.45 4.25 -105.05 -0.45 -3.89 16 18 C 0.07 1.11 11.96 -17.37 -0.21 0.90 16 19 N -0.31 -4.71 12.70 30.62 0.39 -4.32 16 20 N -0.49 -6.02 7.36 30.45 0.22 -5.79 16 21 H 0.43 3.75 8.96 -182.61 -1.64 2.12 16 22 C 0.05 0.63 10.25 -17.22 -0.18 0.46 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.07 5.65 -51.93 -0.29 0.78 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.09 2.03 7.31 -51.93 -0.38 1.65 16 34 H 0.18 2.62 8.06 -52.48 -0.42 2.20 16 35 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 279.65 15.07 4.21 4.21 Total: -1.00 -30.36 279.65 -8.23 -38.59 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.38 Total: 1.50 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -1.80 Total: -13.15 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.32 Total: -47.63 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.59 Total: 16.48 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.36 -8.23 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.115 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds