Wall clock time and date at job start Mon Mar 30 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00737 * 2 1 4 4 H 1.48501 * 109.47251 * 264.77818 * 3 2 1 5 5 H 1.48507 * 109.46858 * 24.77155 * 3 2 1 6 6 H 1.48494 * 109.47307 * 144.77043 * 3 2 1 7 7 C 1.37883 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99685 * 5.83336 * 7 2 1 9 9 C 1.50700 * 120.00443 * 185.83675 * 7 2 1 10 10 H 1.09002 * 109.44969 * 335.27237 * 9 7 2 11 11 C 1.53038 * 109.46175 * 95.24631 * 9 7 2 12 12 C 1.53120 * 109.27419 * 179.19662 * 11 9 7 13 13 C 1.53117 * 109.16235 * 302.34497 * 12 11 9 14 14 C 1.53040 * 109.27957 * 57.65688 * 13 12 11 15 15 N 1.46847 * 109.52144 * 300.82124 * 14 13 12 16 16 C 1.46904 * 111.00099 * 185.83785 * 15 14 13 17 17 C 1.50702 * 109.46964 * 45.78763 * 16 15 14 18 18 C 1.39865 * 126.03629 * 90.02595 * 17 16 15 19 19 N 1.30833 * 108.20286 * 179.71877 * 18 17 16 20 20 N 1.40086 * 108.20496 * 0.24733 * 19 18 17 21 21 H 0.96999 * 126.03954 * 180.02562 * 20 19 18 22 22 C 1.34948 * 107.92583 * 359.97438 * 20 19 18 23 23 H 0.97003 * 119.99633 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.50516 * 299.13744 * 11 9 7 25 25 H 1.09003 * 109.49966 * 59.25807 * 11 9 7 26 26 H 1.08999 * 109.52727 * 62.25023 * 12 11 9 27 27 H 1.09000 * 109.51850 * 182.44077 * 12 11 9 28 28 H 1.08998 * 109.50465 * 177.59706 * 13 12 11 29 29 H 1.08998 * 109.50558 * 297.67837 * 13 12 11 30 30 H 1.08997 * 109.46399 * 180.80441 * 14 13 12 31 31 H 1.08996 * 109.46351 * 60.83497 * 14 13 12 32 32 H 1.08996 * 109.46708 * 285.79136 * 16 15 14 33 33 H 1.08997 * 109.47105 * 165.79278 * 16 15 14 34 34 H 1.08007 * 125.90370 * 359.97438 * 18 17 16 35 35 H 1.08000 * 126.13084 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6072 1.9826 -1.3943 5 1 1.3959 2.6820 0.5867 6 1 3.4871 1.4744 0.8076 7 6 2.0045 -1.1941 0.0005 8 1 1.4686 -2.1270 -0.0941 9 6 3.5056 -1.1976 0.1333 10 1 3.9030 -0.2443 -0.2154 11 6 3.8872 -1.4029 1.6010 12 6 5.4130 -1.4258 1.7281 13 6 5.9749 -2.5376 0.8378 14 6 5.5327 -2.2994 -0.6079 15 7 4.0659 -2.2869 -0.6766 16 6 3.6048 -2.1988 -2.0686 17 6 4.3821 -3.1714 -2.9177 18 6 4.0322 -4.5008 -3.1758 19 7 4.9458 -5.0199 -3.9553 20 7 5.9105 -4.0376 -4.2136 21 1 6.7022 -4.1458 -4.7634 22 6 5.5431 -2.9136 -3.5632 23 1 -0.4850 0.8401 -0.0004 24 1 3.4844 -0.5859 2.1995 25 1 3.4784 -2.3496 1.9542 26 1 5.8194 -0.4652 1.4114 27 1 5.6892 -1.6151 2.7653 28 1 7.0635 -2.5312 0.8910 29 1 5.5994 -3.5022 1.1794 30 1 5.9192 -3.0971 -1.2420 31 1 5.9206 -1.3410 -0.9531 32 1 3.7619 -1.1862 -2.4400 33 1 2.5435 -2.4426 -2.1160 34 1 3.1566 -5.0096 -2.8003 35 1 6.0781 -1.9754 -3.5611 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259867519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:59 Heat of formation + Delta-G solvation = 51.878188 kcal Electronic energy + Delta-G solvation = -17088.254513 eV Core-core repulsion = 14507.624481 eV Total energy + Delta-G solvation = -2580.630032 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.14298 -39.67391 -34.82237 -34.79718 -32.32095 -32.06366 -30.80566 -27.52128 -26.40633 -23.56723 -22.93651 -22.53601 -20.84641 -20.36802 -18.96670 -18.42317 -17.06914 -15.93667 -15.70554 -15.44493 -15.28193 -15.10193 -14.71295 -14.50923 -14.23498 -13.92688 -13.62885 -13.18784 -12.86118 -12.67885 -12.44873 -12.31007 -11.81102 -11.67061 -11.61581 -11.39960 -11.09183 -10.77095 -10.64615 -10.49092 -9.44286 -8.74286 -8.24149 -6.25682 0.98521 1.32797 1.35286 1.45288 1.83429 2.11924 2.35864 3.09018 3.50594 3.91859 4.10455 4.14219 4.20574 4.30440 4.40171 4.58041 4.67906 4.74157 4.83049 4.90043 4.95176 5.05566 5.12970 5.20594 5.26961 5.27250 5.40500 5.50056 5.60254 5.68912 5.80324 6.20897 6.49312 6.52695 6.77095 6.82289 6.89040 7.40754 8.92826 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024887 B = 0.008911 C = 0.007509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.795106 B = 3141.560371 C = 3727.975155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.017 3.983 3 Si 0.931 3.069 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.248 1.248 7 C -0.497 4.497 8 H 0.035 0.965 9 C 0.191 3.809 10 H -0.004 1.004 11 C -0.105 4.105 12 C -0.119 4.119 13 C -0.108 4.108 14 C 0.054 3.946 15 N -0.536 5.536 16 C 0.155 3.845 17 C -0.243 4.243 18 C 0.058 3.942 19 N -0.324 5.324 20 N -0.465 5.465 21 H 0.453 0.547 22 C 0.075 3.925 23 H 0.264 0.736 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.056 0.944 34 H 0.183 0.817 35 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.110 -2.844 -4.670 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.171 1.171 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.084 3.916 10 H 0.013 0.987 11 C -0.144 4.144 12 C -0.157 4.157 13 C -0.146 4.146 14 C -0.074 4.074 15 N -0.261 5.261 16 C 0.026 3.974 17 C -0.254 4.254 18 C -0.128 4.128 19 N -0.147 5.147 20 N -0.175 5.175 21 H 0.300 0.700 22 C -0.074 4.074 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.200 0.800 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 16.161 -4.226 -5.096 17.464 hybrid contribution -0.260 2.248 -0.069 2.264 sum 15.901 -1.978 -5.166 16.836 Atomic orbital electron populations 1.70046 1.08035 1.27767 1.52859 1.25774 0.95324 1.02368 0.94624 0.85976 0.79559 0.79604 0.79282 1.19457 1.21454 1.17131 1.21103 0.91174 0.92875 1.48424 0.94623 1.19558 0.92783 0.88023 0.91280 0.98656 1.21679 0.95408 1.00278 0.97039 1.21649 0.94970 0.98773 1.00277 1.21543 1.00287 0.98568 0.94214 1.22178 0.88078 0.99501 0.97594 1.61972 1.07768 1.46943 1.09438 1.19891 0.97604 0.93898 0.85979 1.20149 1.00071 0.96596 1.08622 1.23919 0.98769 0.94030 0.96035 1.77236 1.01674 1.14333 1.21500 1.46230 1.22245 1.07980 1.41058 0.70032 1.22706 0.96346 0.93314 0.95035 0.92683 0.94065 0.93270 0.92794 0.90896 0.89670 0.92292 0.90316 0.95903 0.96277 0.92539 0.80023 0.78105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 2 C 0.02 0.95 5.47 84.66 0.46 1.41 16 3 Si 0.93 43.66 27.02 68.60 1.85 45.52 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.25 -10.79 6.78 99.48 0.67 -10.12 16 7 C -0.50 -27.90 7.58 25.60 0.19 -27.71 16 8 H 0.04 2.27 8.00 -2.91 -0.02 2.25 16 9 C 0.19 8.77 1.48 44.19 0.07 8.84 16 10 H 0.00 -0.19 5.24 -2.39 -0.01 -0.20 16 11 C -0.11 -4.38 5.36 30.65 0.16 -4.22 16 12 C -0.12 -3.77 6.00 30.67 0.18 -3.59 16 13 C -0.11 -3.11 6.09 30.65 0.19 -2.92 16 14 C 0.05 1.71 4.75 86.33 0.41 2.12 16 15 N -0.54 -21.57 4.63 -880.04 -4.07 -25.65 16 16 C 0.15 6.05 5.15 85.56 0.44 6.49 16 17 C -0.24 -7.57 4.25 -20.14 -0.09 -7.65 16 18 C 0.06 1.82 11.96 85.24 1.02 2.84 16 19 N -0.32 -9.33 12.70 -57.02 -0.72 -10.05 16 20 N -0.47 -9.95 7.36 -57.59 -0.42 -10.37 16 21 H 0.45 5.99 8.96 -213.33 -1.91 4.08 16 22 C 0.08 1.75 10.25 83.54 0.86 2.61 16 23 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 24 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 2.29 5.65 -2.39 -0.01 2.28 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.02 0.76 8.08 -2.39 -0.02 0.74 16 33 H 0.06 2.58 7.31 -2.39 -0.02 2.57 16 34 H 0.18 5.44 8.06 -2.91 -0.02 5.42 16 35 H 0.20 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -68.11 279.65 -0.03 -68.15 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -0.86 Total: 12.54 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 3.90 Total: -21.78 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -4.92 Total: -104.43 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.85 Total: 45.52 kcal Total: -68.11 -0.03 -68.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.026 kcal (2) G-P(sol) polarization free energy of solvation -68.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds